Wall clock time and date at job start Sun Mar 7 2021 07:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21581 * 120.00210 * 2 1 4 4 N 1.34780 * 119.99749 * 180.02562 * 2 1 3 5 5 C 1.46492 * 120.00132 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47152 * 34.99769 * 5 4 2 7 7 C 1.53006 * 109.47363 * 154.99846 * 5 4 2 8 8 C 1.52997 * 109.47164 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47415 * 300.00027 * 8 7 5 10 10 H 1.08996 * 109.46550 * 300.00288 * 9 8 7 11 11 N 1.46500 * 109.47089 * 179.97438 * 9 8 7 12 12 C 1.34782 * 119.99474 * 154.99416 * 11 9 8 13 13 O 1.21689 * 119.99893 * 0.02562 * 12 11 9 14 14 C 1.46681 * 119.99533 * 179.97438 * 12 11 9 15 15 C 1.37868 * 126.22998 * 180.02562 * 14 12 11 16 16 C 1.39837 * 107.08534 * 180.02562 * 15 14 12 17 17 C 1.50694 * 126.06804 * 180.02562 * 16 15 14 18 18 O 1.42909 * 109.47360 * 65.00049 * 17 16 15 19 19 Si 1.86308 * 109.47160 * 184.99617 * 17 16 15 20 20 C 1.35458 * 107.86290 * 359.97438 * 16 15 14 21 21 N 1.35537 * 108.87044 * 359.73345 * 20 16 15 22 22 C 1.52996 * 109.46972 * 59.99860 * 9 8 7 23 23 C 1.52997 * 109.47165 * 300.00293 * 22 9 8 24 24 H 0.97001 * 120.00766 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99767 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99905 * 359.97438 * 4 2 1 27 27 H 1.09001 * 109.46998 * 299.99569 * 7 5 4 28 28 H 1.09000 * 109.47050 * 59.99860 * 7 5 4 29 29 H 1.09000 * 109.47140 * 60.00051 * 8 7 5 30 30 H 1.09001 * 109.47230 * 179.97438 * 8 7 5 31 31 H 0.96992 * 120.00233 * 335.00422 * 11 9 8 32 32 H 1.08001 * 126.45639 * 0.04256 * 15 14 12 33 33 H 1.08999 * 109.47165 * 304.99439 * 17 16 15 34 34 H 0.96695 * 114.00102 * 59.99453 * 18 17 16 35 35 H 1.48498 * 110.00066 * 180.02562 * 19 17 16 36 36 H 1.48504 * 109.99853 * 301.32037 * 19 17 16 37 37 H 1.07993 * 125.55979 * 179.97438 * 20 16 15 38 38 H 0.97001 * 125.67851 * 180.29997 * 21 20 16 39 39 H 1.09000 * 109.47054 * 60.00300 * 22 9 8 40 40 H 1.09001 * 109.46997 * 180.02562 * 22 9 8 41 41 H 1.09000 * 109.47140 * 299.99954 * 23 22 9 42 42 H 1.09002 * 109.47045 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9557 1.0529 0.0000 4 7 2.0216 -1.1673 -0.0005 5 6 3.4865 -1.1674 -0.0011 6 1 3.8501 -0.3257 0.5884 7 6 3.9967 -2.4749 0.6081 8 6 5.5267 -2.4752 0.6069 9 6 6.0357 -2.3495 -0.8305 10 1 5.6716 -3.1912 -1.4196 11 7 7.5007 -2.3492 -0.8315 12 6 8.1738 -2.7486 -1.9288 13 8 7.5646 -3.1089 -2.9187 14 6 9.6406 -2.7477 -1.9300 15 6 10.4548 -3.1276 -2.9758 16 6 11.7761 -2.9706 -2.5457 17 6 13.0132 -3.2636 -3.3548 18 8 13.0784 -2.3683 -4.4667 19 14 14.5223 -3.0373 -2.2859 20 6 11.7466 -2.5073 -1.2732 21 7 10.4548 -2.3616 -0.8895 22 6 5.5255 -1.0421 -1.4396 23 6 3.9955 -1.0418 -1.4384 24 1 -0.4851 -0.8400 -0.0004 25 1 -0.4850 0.8401 0.0004 26 1 1.5365 -2.0073 -0.0005 27 1 3.6338 -2.5646 1.6320 28 1 3.6331 -3.3166 0.0186 29 1 5.8907 -1.6335 1.1961 30 1 5.8902 -3.4065 1.0413 31 1 7.9862 -2.0618 -0.0425 32 1 10.1328 -3.4798 -3.9446 33 1 12.9754 -4.2909 -3.7172 34 1 13.1146 -1.4345 -4.2181 35 1 15.7492 -3.3227 -3.0724 36 1 14.5684 -1.6494 -1.7596 37 1 12.6112 -2.2860 -0.6652 38 1 10.1542 -2.0411 -0.0248 39 1 5.8895 -0.2004 -0.8504 40 1 5.8877 -0.9528 -2.4638 41 1 3.6315 -1.8835 -2.0277 42 1 3.6320 -0.1105 -1.8728 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567774_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:53:08 Heat of formation + Delta-G solvation = -70.018670 kcal Electronic energy + Delta-G solvation = -25209.842073 eV Core-core repulsion = 21384.115861 eV Total energy + Delta-G solvation = -3825.726212 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48399 -41.28315 -40.51562 -38.94155 -37.79536 -36.09195 -34.85545 -33.70054 -32.50333 -31.87843 -30.87484 -29.16197 -26.48479 -24.61788 -23.94942 -23.01063 -21.88586 -21.47238 -21.11503 -20.70068 -19.95944 -19.10143 -18.33326 -17.72086 -17.31814 -16.95924 -16.54070 -16.25599 -16.18445 -15.94031 -15.71747 -15.47357 -15.13606 -15.00683 -14.85052 -14.51368 -14.44072 -14.09691 -13.85872 -13.61245 -13.44865 -13.26841 -12.76607 -12.48831 -12.44850 -12.19410 -11.80700 -11.58798 -11.53383 -11.47626 -11.26883 -10.73225 -10.47847 -10.27340 -9.97623 -9.96047 -9.29200 -4.83243 0.36877 1.39960 1.55749 1.68506 1.85763 1.99600 2.10060 2.15262 2.16639 2.26619 3.55345 3.57749 3.60850 3.64766 3.80974 3.95605 3.99509 4.08315 4.13984 4.17421 4.33287 4.34519 4.38337 4.41134 4.65162 4.70311 4.73981 4.87854 4.94638 5.02595 5.04312 5.07537 5.09768 5.22249 5.25571 5.40316 5.54727 5.59333 5.73929 5.88959 6.02468 6.36320 6.52829 6.63129 7.07165 7.09296 7.64573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.648 6.648 4 N -0.729 5.729 5 C 0.164 3.836 6 H 0.072 0.928 7 C -0.114 4.114 8 C -0.114 4.114 9 C 0.148 3.852 10 H 0.076 0.924 11 N -0.711 5.711 12 C 0.588 3.412 13 O -0.575 6.575 14 C -0.069 4.069 15 C -0.106 4.106 16 C -0.224 4.224 17 C -0.062 4.062 18 O -0.558 6.558 19 Si 0.790 3.210 20 C 0.060 3.940 21 N -0.514 5.514 22 C -0.121 4.121 23 C -0.121 4.121 24 H 0.414 0.586 25 H 0.418 0.582 26 H 0.413 0.587 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.412 0.588 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.384 0.616 35 H -0.314 1.314 36 H -0.268 1.268 37 H 0.214 0.786 38 H 0.437 0.563 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -3.748 10.419 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.394 3.606 3 O -0.530 6.530 4 N -0.385 5.385 5 C 0.058 3.942 6 H 0.090 0.910 7 C -0.153 4.153 8 C -0.153 4.153 9 C 0.044 3.956 10 H 0.094 0.906 11 N -0.362 5.362 12 C 0.377 3.623 13 O -0.454 6.454 14 C -0.182 4.182 15 C -0.133 4.133 16 C -0.231 4.231 17 C -0.170 4.170 18 O -0.366 6.366 19 Si 0.694 3.306 20 C -0.078 4.078 21 N -0.112 5.112 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.245 0.755 25 H 0.251 0.749 26 H 0.250 0.750 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.233 0.767 35 H -0.243 1.243 36 H -0.194 1.194 37 H 0.230 0.770 38 H 0.279 0.721 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.144 -3.303 9.685 10.234 hybrid contribution -1.085 1.011 -0.801 1.686 sum -1.229 -2.291 8.884 9.257 Atomic orbital electron populations 1.42869 1.04269 1.13837 1.81065 1.16295 0.82980 0.84167 0.77165 1.90948 1.69140 1.32513 1.60438 1.45028 1.07118 1.07116 1.79253 1.20844 0.78154 0.99673 0.95493 0.91018 1.21708 0.95080 0.95742 1.02741 1.21721 0.95228 1.04667 0.93655 1.21044 0.78425 0.97643 0.98518 0.90583 1.45773 1.07564 1.67041 1.15774 1.17264 0.85412 0.76516 0.83111 1.90848 1.69355 1.50177 1.35014 1.20137 0.89888 1.16216 0.91927 1.21228 0.92663 1.01567 0.97811 1.19875 0.94740 1.12009 0.96446 1.24775 1.03099 0.96249 0.92879 1.86572 1.95737 1.20910 1.33420 0.94260 0.71477 0.82730 0.82125 1.22372 0.87435 1.02004 0.96033 1.41855 1.05501 1.49601 1.14211 1.21794 0.95247 0.98224 1.00757 1.21816 0.94937 1.01704 0.97641 0.75501 0.74941 0.75018 0.88893 0.89836 0.89619 0.88746 0.75166 0.85916 0.87409 0.76709 1.24282 1.19370 0.76997 0.72104 0.91082 0.93661 0.91228 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.60 8.88 -184.75 -1.64 1.96 16 2 C 0.70 2.77 8.80 179.05 1.58 4.35 16 3 O -0.65 -9.77 16.84 -3.97 -0.07 -9.83 16 4 N -0.73 1.93 5.08 -457.83 -2.33 -0.40 16 5 C 0.16 -0.27 2.46 44.99 0.11 -0.16 16 6 H 0.07 0.20 7.58 -2.39 -0.02 0.18 16 7 C -0.11 0.93 5.39 30.60 0.16 1.09 16 8 C -0.11 0.98 5.39 30.59 0.16 1.14 16 9 C 0.15 -0.31 2.45 44.99 0.11 -0.20 16 10 H 0.08 0.17 7.58 -2.39 -0.02 0.15 16 11 N -0.71 2.04 5.07 -446.50 -2.26 -0.23 16 12 C 0.59 3.26 7.75 86.45 0.67 3.93 16 13 O -0.57 -8.84 16.55 -4.31 -0.07 -8.91 16 14 C -0.07 -0.17 7.06 40.35 0.28 0.11 16 15 C -0.11 -0.68 10.59 22.57 0.24 -0.44 16 16 C -0.22 -0.12 5.43 -20.12 -0.11 -0.23 16 17 C -0.06 -0.04 3.02 71.23 0.22 0.17 16 18 O -0.56 -3.07 12.88 -148.98 -1.92 -4.99 16 19 Si 0.79 -3.36 30.60 68.60 2.10 -1.26 16 20 C 0.06 -0.38 10.45 83.48 0.87 0.49 16 21 N -0.51 3.49 5.99 -183.62 -1.10 2.39 16 22 C -0.12 -0.21 5.49 30.59 0.17 -0.04 16 23 C -0.12 -0.24 5.49 30.59 0.17 -0.07 16 24 H 0.41 -4.68 8.84 -92.71 -0.82 -5.50 16 25 H 0.42 -1.90 8.93 -92.71 -0.83 -2.73 16 26 H 0.41 -3.87 8.62 -92.70 -0.80 -4.66 16 27 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.08 -0.78 8.14 -2.39 -0.02 -0.79 16 29 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.41 -4.28 7.73 -92.71 -0.72 -5.00 16 32 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.11 0.13 7.96 -2.39 -0.02 0.11 16 34 H 0.38 -0.32 8.70 -74.06 -0.64 -0.97 16 35 H -0.31 -1.64 7.11 99.48 0.71 -0.93 16 36 H -0.27 0.78 7.11 99.48 0.71 1.49 16 37 H 0.21 -2.99 6.21 -2.91 -0.02 -3.01 16 38 H 0.44 -6.45 8.19 -92.71 -0.76 -7.21 16 39 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 Total: 0.00 -34.74 349.41 -6.06 -40.80 By element: Atomic # 1 Polarization: -26.27 SS G_CDS: -3.40 Total: -29.67 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 4.64 Total: 10.15 kcal Atomic # 7 Polarization: 11.05 SS G_CDS: -7.33 Total: 3.72 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -2.06 Total: -23.74 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.10 Total: -1.26 kcal Total: -34.74 -6.06 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567774_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.216 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds