Wall clock time and date at job start Sun Mar 7 2021 07:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34780 * 1 3 3 O 1.21591 * 119.99530 * 2 1 4 4 N 1.34769 * 120.00397 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00080 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.47244 * 325.00350 * 5 4 2 7 7 C 1.53002 * 109.46920 * 85.00696 * 5 4 2 8 8 C 1.53003 * 109.46993 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47125 * 299.99563 * 8 7 5 10 10 H 1.09002 * 109.46910 * 300.00492 * 9 8 7 11 11 N 1.46492 * 109.47282 * 180.02562 * 9 8 7 12 12 C 1.34782 * 119.99911 * 84.99697 * 11 9 8 13 13 O 1.21280 * 120.00104 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99741 * 179.97438 * 12 11 9 15 15 N 1.46507 * 109.47112 * 179.97438 * 14 12 11 16 16 C 1.35042 * 125.92733 * 125.00060 * 15 14 12 17 17 C 1.35081 * 107.97389 * 180.02562 * 16 15 14 18 18 C 1.50702 * 126.07297 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47116 * 105.14058 * 18 17 16 20 20 Si 1.86295 * 109.47157 * 345.14024 * 18 17 16 21 21 C 1.40847 * 107.85313 * 0.02562 * 17 16 15 22 22 C 1.48421 * 126.03525 * 180.02562 * 21 17 16 23 23 C 1.39326 * 120.12018 * 317.18249 * 22 21 17 24 24 C 1.38017 * 119.87665 * 179.77295 * 23 22 21 25 25 C 1.38320 * 120.12142 * 0.48762 * 24 23 22 26 26 C 1.38327 * 120.24175 * 359.79068 * 25 24 23 27 27 C 1.38018 * 120.11652 * 359.95535 * 26 25 24 28 28 N 1.31621 * 107.92326 * 359.71636 * 21 17 16 29 29 C 1.53004 * 109.47136 * 59.99892 * 9 8 7 30 30 C 1.52994 * 109.47273 * 300.00202 * 29 9 8 31 31 H 0.97002 * 119.99515 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99921 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00088 * 0.02562 * 4 2 1 34 34 H 1.09007 * 109.46653 * 299.99481 * 7 5 4 35 35 H 1.08995 * 109.47444 * 59.99777 * 7 5 4 36 36 H 1.08999 * 109.46760 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46979 * 59.99989 * 8 7 5 38 38 H 0.96999 * 120.00211 * 265.00403 * 11 9 8 39 39 H 1.08992 * 109.47603 * 300.00271 * 14 12 11 40 40 H 1.09008 * 109.47014 * 60.00530 * 14 12 11 41 41 H 1.08000 * 126.01126 * 0.02562 * 16 15 14 42 42 H 1.09003 * 109.47233 * 225.14000 * 18 17 16 43 43 H 0.96705 * 113.99745 * 300.00223 * 19 18 17 44 44 H 1.48501 * 110.00213 * 179.97438 * 20 18 17 45 45 H 1.48500 * 110.00136 * 301.32045 * 20 18 17 46 46 H 1.07994 * 120.05965 * 0.02562 * 23 22 21 47 47 H 1.08001 * 119.93994 * 180.27926 * 24 23 22 48 48 H 1.07995 * 119.88151 * 179.76563 * 25 24 23 49 49 H 1.07993 * 119.93886 * 179.97438 * 26 25 24 50 50 H 1.07994 * 120.05963 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46750 * 59.99707 * 29 9 8 52 52 H 1.08997 * 109.47063 * 180.02562 * 29 9 8 53 53 H 1.08999 * 109.47513 * 179.97438 * 30 29 9 54 54 H 1.09002 * 109.47477 * 299.99831 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9557 1.0531 0.0000 4 7 2.0217 -1.1671 0.0005 5 6 3.4867 -1.1670 0.0000 6 1 3.8498 -0.3256 -0.5901 7 6 3.9972 -1.0405 1.4367 8 6 5.5273 -1.0397 1.4361 9 6 6.0376 -2.3471 0.8269 10 1 5.6749 -3.1888 1.4169 11 7 7.5026 -2.3467 0.8268 12 6 8.1766 -2.7453 1.9238 13 8 7.5704 -3.1048 2.9108 14 6 9.6836 -2.7455 1.9235 15 7 10.1722 -3.2166 3.2219 16 6 11.0276 -4.2422 3.4220 17 6 11.2306 -4.3622 4.7520 18 6 12.1153 -5.3789 5.4264 19 8 13.3147 -4.7441 5.8744 20 14 12.5423 -6.7301 4.2171 21 6 10.4676 -3.3692 5.3967 22 6 10.3939 -3.1380 6.8609 23 6 10.2872 -4.2178 7.7348 24 6 10.2237 -3.9972 9.0957 25 6 10.2557 -2.7065 9.5919 26 6 10.3557 -1.6304 8.7285 27 6 10.4251 -1.8399 7.3661 28 7 9.8367 -2.6784 4.4708 29 6 5.5271 -2.4738 -0.6099 30 6 3.9971 -2.4745 -0.6093 31 1 -0.4849 -0.8401 -0.0004 32 1 -0.4850 0.8400 -0.0004 33 1 1.5368 -2.0072 0.0005 34 1 3.6340 -0.1087 1.8706 35 1 3.6342 -1.8819 2.0268 36 1 5.8909 -0.9491 2.4596 37 1 5.8899 -0.1980 0.8462 38 1 7.9875 -2.0595 0.0374 39 1 10.0468 -3.4064 1.1367 40 1 10.0470 -1.7335 1.7445 41 1 11.4714 -4.8580 2.6537 42 1 11.5906 -5.8078 6.2801 43 1 13.8337 -4.3393 5.1659 44 1 13.4151 -7.7388 4.8698 45 1 11.3017 -7.3770 3.7194 46 1 10.2583 -5.2258 7.3482 47 1 10.1456 -4.8338 9.7743 48 1 10.2020 -2.5382 10.6573 49 1 10.3799 -0.6247 9.1212 50 1 10.5036 -0.9991 6.6928 51 1 5.8897 -1.6320 -1.1998 52 1 5.8903 -3.4054 -1.0437 53 1 3.6334 -2.5643 -1.6328 54 1 3.6344 -3.3162 -0.0193 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567774_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:54:23 Heat of formation + Delta-G solvation = -0.465425 kcal Electronic energy + Delta-G solvation = -37231.878334 eV Core-core repulsion = 32364.224847 eV Total energy + Delta-G solvation = -4867.653487 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.48479 -41.37610 -40.75219 -39.83659 -39.02586 -37.65606 -36.05201 -34.88819 -34.76280 -33.59114 -32.32629 -31.98715 -31.88541 -31.43556 -29.73595 -28.18148 -26.01336 -24.44180 -23.95540 -23.56653 -23.36792 -21.96242 -21.71759 -21.52227 -21.29831 -20.88011 -19.24246 -18.74959 -18.43856 -18.19591 -17.72710 -17.48719 -16.99593 -16.60874 -16.35953 -16.28228 -16.21676 -16.05970 -15.69544 -15.53009 -15.50353 -15.42213 -15.08420 -15.02143 -14.81859 -14.38300 -14.34823 -14.18609 -14.09106 -13.95815 -13.72363 -13.59724 -13.31799 -13.20115 -12.75484 -12.49724 -12.47172 -12.40770 -12.20969 -12.16430 -11.87588 -11.72153 -11.57921 -11.54032 -11.47722 -11.22610 -10.75053 -10.61684 -10.21917 -10.15516 -9.99306 -9.92703 -9.77402 -9.31743 -5.01214 0.08190 0.41476 0.82583 1.31142 1.41775 1.50530 1.63643 1.76373 1.89428 2.03910 2.12996 2.14593 2.84603 3.34746 3.53292 3.59455 3.61638 3.64909 3.67526 3.74579 3.93340 3.95577 3.97238 4.02840 4.07361 4.13929 4.16458 4.18144 4.22589 4.33440 4.34582 4.39520 4.43325 4.49837 4.52745 4.67099 4.69397 4.77080 4.83338 4.91799 4.95029 5.01990 5.05593 5.05985 5.09572 5.22866 5.25961 5.27052 5.45932 5.51519 5.52513 5.52694 5.57957 5.86819 5.94454 5.98988 6.00436 6.49821 6.60338 6.90942 7.06883 7.20027 7.62473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.648 6.648 4 N -0.730 5.730 5 C 0.165 3.835 6 H 0.073 0.927 7 C -0.122 4.122 8 C -0.119 4.119 9 C 0.151 3.849 10 H 0.067 0.933 11 N -0.708 5.708 12 C 0.494 3.506 13 O -0.567 6.567 14 C 0.109 3.891 15 N -0.359 5.359 16 C 0.080 3.920 17 C -0.270 4.270 18 C -0.045 4.045 19 O -0.558 6.558 20 Si 0.803 3.197 21 C 0.105 3.895 22 C -0.025 4.025 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.111 4.111 28 N -0.295 5.295 29 C -0.113 4.113 30 C -0.115 4.115 31 H 0.414 0.586 32 H 0.418 0.582 33 H 0.413 0.587 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.422 0.578 39 H 0.185 0.815 40 H 0.142 0.858 41 H 0.230 0.770 42 H 0.092 0.908 43 H 0.391 0.609 44 H -0.300 1.300 45 H -0.284 1.284 46 H 0.123 0.877 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.143 0.857 50 H 0.118 0.882 51 H 0.087 0.913 52 H 0.096 0.904 53 H 0.093 0.907 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -4.431 -10.568 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.394 3.606 3 O -0.530 6.530 4 N -0.386 5.386 5 C 0.059 3.941 6 H 0.091 0.909 7 C -0.161 4.161 8 C -0.159 4.159 9 C 0.046 3.954 10 H 0.085 0.915 11 N -0.362 5.362 12 C 0.279 3.721 13 O -0.444 6.444 14 C -0.014 4.014 15 N -0.140 5.140 16 C -0.065 4.065 17 C -0.282 4.282 18 C -0.154 4.154 19 O -0.365 6.365 20 Si 0.708 3.292 21 C -0.060 4.060 22 C -0.027 4.027 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.130 4.130 28 N -0.116 5.116 29 C -0.151 4.151 30 C -0.154 4.154 31 H 0.245 0.755 32 H 0.251 0.749 33 H 0.249 0.751 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.260 0.740 39 H 0.202 0.798 40 H 0.159 0.841 41 H 0.246 0.754 42 H 0.109 0.891 43 H 0.241 0.759 44 H -0.228 1.228 45 H -0.211 1.211 46 H 0.141 0.859 47 H 0.163 0.837 48 H 0.165 0.835 49 H 0.161 0.839 50 H 0.136 0.864 51 H 0.106 0.894 52 H 0.115 0.885 53 H 0.111 0.889 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.215 -3.939 -9.926 10.681 hybrid contribution -0.769 -0.244 0.939 1.238 sum -0.554 -4.183 -8.987 9.928 Atomic orbital electron populations 1.42868 1.04256 1.13836 1.81072 1.16300 0.82993 0.84166 0.77169 1.90952 1.69144 1.32477 1.60411 1.45040 1.07166 1.07110 1.79262 1.20846 0.78109 0.99807 0.95327 0.90890 1.21814 0.95270 1.01331 0.97710 1.21774 0.94987 0.98669 1.00454 1.20914 0.79363 0.96925 0.98172 0.91486 1.45817 1.06994 1.67032 1.16330 1.21163 0.90977 0.76908 0.83041 1.90827 1.70768 1.48124 1.34728 1.22043 0.90597 1.06956 0.81833 1.48161 1.35109 1.25404 1.05373 1.22900 0.94023 0.91940 0.97611 1.20652 1.09447 1.04798 0.93296 1.24763 0.85676 1.00500 1.04486 1.86480 1.34401 1.76350 1.39308 0.94072 0.78942 0.74709 0.81490 1.20819 0.96547 0.95754 0.92857 1.17995 1.01846 0.94151 0.88700 1.21241 0.99805 0.98096 0.93715 1.21380 0.99776 0.98309 0.94798 1.21568 0.98689 0.92338 1.01118 1.21384 0.99763 1.00494 0.92665 1.21274 0.99768 0.95709 0.96241 1.77710 1.22192 1.22606 0.89099 1.21708 0.94826 1.04846 0.93715 1.21720 0.95516 0.95511 1.02631 0.75517 0.74917 0.75079 0.93923 0.91767 0.94307 0.90895 0.73975 0.79802 0.84088 0.75362 0.89110 0.75936 1.22831 1.21146 0.85896 0.83704 0.83457 0.83874 0.86437 0.89413 0.88520 0.88861 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.09 8.88 -184.74 -1.64 1.45 16 2 C 0.70 3.24 8.80 179.06 1.58 4.82 16 3 O -0.65 -10.17 16.84 -4.00 -0.07 -10.24 16 4 N -0.73 1.37 5.08 -457.80 -2.33 -0.96 16 5 C 0.16 -0.16 2.45 44.99 0.11 -0.05 16 6 H 0.07 0.24 7.58 -2.39 -0.02 0.22 16 7 C -0.12 -0.39 5.49 30.60 0.17 -0.22 16 8 C -0.12 -0.28 5.49 30.60 0.17 -0.11 16 9 C 0.15 -0.42 2.45 44.99 0.11 -0.31 16 10 H 0.07 0.18 7.58 -2.39 -0.02 0.16 16 11 N -0.71 4.33 5.08 -442.54 -2.25 2.09 16 12 C 0.49 0.36 7.82 87.66 0.69 1.04 16 13 O -0.57 -7.86 15.38 -3.03 -0.05 -7.91 16 14 C 0.11 -0.79 6.98 85.63 0.60 -0.19 16 15 N -0.36 -0.92 3.40 -351.90 -1.20 -2.11 16 16 C 0.08 -0.13 9.96 83.47 0.83 0.70 16 17 C -0.27 -1.31 5.35 -19.95 -0.11 -1.41 16 18 C -0.04 -0.13 2.51 71.24 0.18 0.05 16 19 O -0.56 -2.06 12.88 -148.98 -1.92 -3.98 16 20 Si 0.80 -2.39 30.74 68.60 2.11 -0.28 16 21 C 0.11 1.26 6.67 42.53 0.28 1.55 16 22 C -0.03 -0.32 5.74 -20.04 -0.12 -0.44 16 23 C -0.11 -1.14 8.89 22.48 0.20 -0.94 16 24 C -0.12 -0.88 10.03 22.24 0.22 -0.65 16 25 C -0.12 -0.70 10.04 22.31 0.22 -0.47 16 26 C -0.13 -0.94 10.03 22.24 0.22 -0.72 16 27 C -0.11 -1.27 9.78 22.48 0.22 -1.05 16 28 N -0.29 -3.76 11.69 -48.16 -0.56 -4.32 16 29 C -0.11 1.03 5.39 30.59 0.16 1.19 16 30 C -0.12 0.90 5.39 30.60 0.16 1.06 16 31 H 0.41 -4.43 8.84 -92.71 -0.82 -5.25 16 32 H 0.42 -1.68 8.93 -92.71 -0.83 -2.51 16 33 H 0.41 -3.52 8.62 -92.71 -0.80 -4.32 16 34 H 0.04 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.42 -6.09 8.60 -92.71 -0.80 -6.89 16 39 H 0.18 -3.44 8.07 -2.39 -0.02 -3.46 16 40 H 0.14 -1.62 8.14 -2.38 -0.02 -1.64 16 41 H 0.23 -3.03 6.40 -2.91 -0.02 -3.05 16 42 H 0.09 0.55 5.55 -2.39 -0.01 0.54 16 43 H 0.39 -2.06 8.70 -74.05 -0.64 -2.70 16 44 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 45 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 46 H 0.12 1.06 6.20 -2.91 -0.02 1.04 16 47 H 0.15 0.29 8.06 -2.91 -0.02 0.26 16 48 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 49 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 50 H 0.12 1.32 8.06 -2.91 -0.02 1.29 16 51 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 52 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 53 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 54 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -46.81 444.05 -4.84 -51.65 By element: Atomic # 1 Polarization: -26.41 SS G_CDS: -2.85 Total: -29.26 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.91 Total: 3.87 kcal Atomic # 7 Polarization: 4.11 SS G_CDS: -7.97 Total: -3.86 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -2.03 Total: -22.12 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.11 Total: -0.28 kcal Total: -46.81 -4.84 -51.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567774_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.184 kcal (2) G-P(sol) polarization free energy of solvation -46.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds