Wall clock time and date at job start Sun Mar 7 2021 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34781 * 1 3 3 O 1.21580 * 119.99701 * 2 1 4 4 N 1.34769 * 119.99697 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99798 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47068 * 34.99973 * 5 4 2 7 7 C 1.53002 * 109.47411 * 155.00053 * 5 4 2 8 8 C 1.52997 * 109.47415 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46978 * 300.00098 * 8 7 5 10 10 H 1.09002 * 109.46838 * 299.99316 * 9 8 7 11 11 N 1.46497 * 109.46729 * 179.97438 * 9 8 7 12 12 C 1.34778 * 119.99664 * 155.00120 * 11 9 8 13 13 O 1.21275 * 120.00492 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99875 * 179.97438 * 12 11 9 15 15 C 1.50702 * 109.47373 * 179.97438 * 14 12 11 16 16 C 1.34848 * 125.89161 * 274.69445 * 15 14 12 17 17 C 1.40888 * 107.41722 * 179.88627 * 16 15 14 18 18 C 1.34855 * 107.41786 * 0.37201 * 17 16 15 19 19 C 1.50695 * 125.89118 * 179.74173 * 18 17 16 20 20 O 1.42898 * 109.47428 * 120.04104 * 19 18 17 21 21 Si 1.86301 * 109.47248 * 0.03827 * 19 18 17 22 22 N 1.36336 * 108.21532 * 359.77309 * 18 17 16 23 23 C 1.53002 * 109.47128 * 59.99726 * 9 8 7 24 24 C 1.52992 * 109.47106 * 300.00123 * 23 9 8 25 25 H 0.96998 * 120.00231 * 179.97438 * 1 2 3 26 26 H 0.97003 * 120.00133 * 359.97438 * 1 2 3 27 27 H 0.97005 * 120.00963 * 359.97438 * 4 2 1 28 28 H 1.09000 * 109.46986 * 300.00092 * 7 5 4 29 29 H 1.09002 * 109.47075 * 59.99363 * 7 5 4 30 30 H 1.09002 * 109.47045 * 59.99931 * 8 7 5 31 31 H 1.08998 * 109.47171 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00413 * 334.99384 * 11 9 8 33 33 H 1.09006 * 109.47337 * 299.99806 * 14 12 11 34 34 H 1.09006 * 109.47440 * 59.99416 * 14 12 11 35 35 H 1.08004 * 126.28907 * 0.02562 * 16 15 14 36 36 H 1.08006 * 126.29126 * 180.17178 * 17 16 15 37 37 H 1.09002 * 109.46854 * 240.04631 * 19 18 17 38 38 H 0.96696 * 114.00023 * 299.99723 * 20 19 18 39 39 H 1.48509 * 109.99882 * 58.68228 * 21 19 18 40 40 H 1.48500 * 110.00211 * 180.02562 * 21 19 18 41 41 H 0.97000 * 125.63314 * 179.97438 * 22 18 17 42 42 H 1.09002 * 109.47070 * 60.00059 * 23 9 8 43 43 H 1.08996 * 109.46550 * 179.97438 * 23 9 8 44 44 H 1.09002 * 109.47103 * 299.99915 * 24 23 9 45 45 H 1.08998 * 109.46862 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9557 1.0529 0.0000 4 7 2.0216 -1.1672 -0.0005 5 6 3.4866 -1.1672 -0.0011 6 1 3.8502 -0.3255 0.5884 7 6 3.9969 -2.4747 0.6080 8 6 5.5269 -2.4750 0.6069 9 6 6.0358 -2.3492 -0.8306 10 1 5.6719 -3.1910 -1.4197 11 7 7.5008 -2.3489 -0.8316 12 6 8.1739 -2.7480 -1.9289 13 8 7.5670 -3.1078 -2.9152 14 6 9.6809 -2.7471 -1.9302 15 6 10.1825 -3.2337 -3.2654 16 6 10.3621 -4.5221 -3.6206 17 6 10.8384 -4.5315 -4.9465 18 6 10.9395 -3.2481 -5.3482 19 6 11.4148 -2.7802 -6.6996 20 8 10.3781 -2.0300 -7.3356 21 14 11.8478 -4.2560 -7.7509 22 7 10.5383 -2.4470 -4.3206 23 6 5.5255 -1.0417 -1.4397 24 6 3.9956 -1.0415 -1.4384 25 1 -0.4850 -0.8400 -0.0004 26 1 -0.4850 0.8401 0.0004 27 1 1.5367 -2.0073 -0.0005 28 1 3.6340 -2.5645 1.6319 29 1 3.6333 -3.3164 0.0186 30 1 5.8908 -1.6333 1.1961 31 1 5.8904 -3.4063 1.0412 32 1 7.9863 -2.0614 -0.0426 33 1 10.0439 -1.7348 -1.7523 34 1 10.0454 -3.4072 -1.1430 35 1 10.1733 -5.3878 -3.0031 36 1 11.0813 -5.4057 -5.5324 37 1 12.2960 -2.1505 -6.5767 38 1 9.5619 -2.5287 -7.4773 39 1 10.6630 -5.1389 -7.8994 40 1 12.3186 -3.8079 -9.0861 41 1 10.5108 -1.4775 -4.3373 42 1 5.8894 -0.2000 -0.8505 43 1 5.8884 -0.9520 -2.4635 44 1 3.6316 -1.8832 -2.0277 45 1 3.6321 -0.1102 -1.8728 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567774_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:55:56 Heat of formation + Delta-G solvation = -73.596581 kcal Electronic energy + Delta-G solvation = -27134.928556 eV Core-core repulsion = 23153.509575 eV Total energy + Delta-G solvation = -3981.418981 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32994 -41.33183 -40.65008 -38.99688 -37.86832 -35.99282 -34.83839 -33.75636 -32.87108 -31.91380 -31.86965 -29.92973 -28.60639 -25.28345 -23.93599 -23.65365 -21.97877 -21.67641 -21.38282 -21.30179 -20.87047 -19.24565 -19.00495 -18.38790 -17.98442 -17.55359 -16.79944 -16.45909 -16.40875 -16.22541 -16.14379 -15.63130 -15.33195 -15.16942 -15.01021 -14.81324 -14.60262 -14.35308 -14.08984 -14.00215 -13.85277 -13.62560 -13.50049 -13.26278 -12.78402 -12.69637 -12.44127 -12.20757 -12.18484 -11.87095 -11.55690 -11.52133 -11.46236 -10.93439 -10.83901 -10.74519 -10.09028 -9.97516 -9.79012 -8.95492 -4.88882 1.08695 1.31177 1.64665 1.67065 1.84445 1.91752 1.95301 2.13858 2.33480 2.52170 3.35785 3.57257 3.61951 3.65099 3.71047 3.80950 3.97768 3.99902 4.14249 4.15606 4.23285 4.36129 4.37425 4.41688 4.43721 4.51932 4.63734 4.69975 4.71112 4.80847 4.94574 5.02833 5.07573 5.10792 5.24635 5.26736 5.28644 5.30226 5.52085 5.54482 5.87517 5.99341 6.00947 6.14406 6.36851 6.55972 6.68013 7.07652 7.29778 7.63009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.648 6.648 4 N -0.729 5.729 5 C 0.164 3.836 6 H 0.071 0.929 7 C -0.115 4.115 8 C -0.115 4.115 9 C 0.148 3.852 10 H 0.070 0.930 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.577 6.577 14 C -0.068 4.068 15 C 0.034 3.966 16 C -0.199 4.199 17 C -0.201 4.201 18 C -0.020 4.020 19 C -0.064 4.064 20 O -0.555 6.555 21 Si 0.801 3.199 22 N -0.538 5.538 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.414 0.586 26 H 0.418 0.582 27 H 0.413 0.587 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.418 0.582 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.385 0.615 39 H -0.292 1.292 40 H -0.297 1.297 41 H 0.418 0.582 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -4.442 7.460 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.394 3.606 3 O -0.530 6.530 4 N -0.386 5.386 5 C 0.059 3.941 6 H 0.090 0.910 7 C -0.153 4.153 8 C -0.153 4.153 9 C 0.044 3.956 10 H 0.088 0.912 11 N -0.367 5.367 12 C 0.297 3.703 13 O -0.456 6.456 14 C -0.108 4.108 15 C -0.080 4.080 16 C -0.224 4.224 17 C -0.226 4.226 18 C -0.133 4.133 19 C -0.172 4.172 20 O -0.363 6.363 21 Si 0.704 3.296 22 N -0.133 5.133 23 C -0.158 4.158 24 C -0.161 4.161 25 H 0.245 0.755 26 H 0.251 0.749 27 H 0.249 0.751 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.256 0.744 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.234 0.766 39 H -0.218 1.218 40 H -0.225 1.225 41 H 0.255 0.745 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.060 -3.742 6.071 7.211 hybrid contribution -1.917 0.860 -0.214 2.111 sum -0.856 -2.883 5.858 6.584 Atomic orbital electron populations 1.42870 1.04258 1.13837 1.81077 1.16294 0.82986 0.84162 0.77169 1.90947 1.69147 1.32493 1.60436 1.45042 1.07156 1.07114 1.79246 1.20843 0.78111 0.99678 0.95495 0.91046 1.21713 0.95396 0.95640 1.02590 1.21711 0.94950 1.04587 0.94048 1.20926 0.79655 0.97096 0.97962 0.91210 1.45944 1.06916 1.67180 1.16660 1.21044 0.90818 0.75897 0.82520 1.90749 1.71215 1.48559 1.35081 1.20272 0.90145 1.06314 0.94065 1.19949 1.06424 0.90847 0.90816 1.20848 1.08444 0.95939 0.97137 1.20912 1.08661 0.95591 0.97436 1.20905 1.09507 0.91028 0.91886 1.25029 0.92960 1.07638 0.91552 1.86532 1.26640 1.42304 1.80780 0.93435 0.84983 0.74930 0.76205 1.41898 1.51367 1.09109 1.10954 1.21774 0.94968 0.98505 1.00575 1.21812 0.95276 1.01461 0.97564 0.75510 0.74927 0.75055 0.89054 0.90030 0.89739 0.88841 0.74437 0.85588 0.83582 0.83983 0.83139 0.85561 0.76589 1.21838 1.22468 0.74503 0.91125 0.93855 0.91509 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.23 8.88 -184.75 -1.64 1.59 16 2 C 0.70 3.13 8.80 179.06 1.58 4.71 16 3 O -0.65 -10.07 16.84 -3.97 -0.07 -10.13 16 4 N -0.73 1.45 5.08 -457.82 -2.33 -0.87 16 5 C 0.16 -0.15 2.46 44.99 0.11 -0.04 16 6 H 0.07 0.26 7.58 -2.39 -0.02 0.24 16 7 C -0.11 0.84 5.39 30.59 0.16 1.00 16 8 C -0.11 0.91 5.39 30.59 0.16 1.07 16 9 C 0.15 -0.34 2.45 44.99 0.11 -0.23 16 10 H 0.07 0.18 7.58 -2.39 -0.02 0.16 16 11 N -0.71 3.28 5.08 -442.53 -2.25 1.03 16 12 C 0.51 0.67 7.79 87.66 0.68 1.35 16 13 O -0.58 -7.07 15.70 -3.01 -0.05 -7.12 16 14 C -0.07 0.32 6.24 29.10 0.18 0.50 16 15 C 0.03 0.09 5.66 41.08 0.23 0.32 16 16 C -0.20 -0.99 10.76 22.14 0.24 -0.75 16 17 C -0.20 -0.97 9.37 22.14 0.21 -0.76 16 18 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 19 C -0.06 -0.13 3.08 71.23 0.22 0.09 16 20 O -0.55 -3.19 12.88 -148.98 -1.92 -5.11 16 21 Si 0.80 0.28 30.58 68.60 2.10 2.38 16 22 N -0.54 -1.65 6.07 -171.12 -1.04 -2.69 16 23 C -0.12 -0.20 5.49 30.59 0.17 -0.03 16 24 C -0.12 -0.30 5.49 30.59 0.17 -0.14 16 25 H 0.41 -4.50 8.84 -92.71 -0.82 -5.32 16 26 H 0.42 -1.75 8.93 -92.71 -0.83 -2.58 16 27 H 0.41 -3.58 8.62 -92.70 -0.80 -4.38 16 28 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.42 -4.81 8.60 -92.71 -0.80 -5.61 16 33 H 0.13 -1.25 8.14 -2.38 -0.02 -1.27 16 34 H 0.15 -1.53 8.14 -2.38 -0.02 -1.55 16 35 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.15 0.21 6.22 -2.91 -0.02 0.20 16 37 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 38 H 0.38 0.85 8.70 -74.06 -0.64 0.21 16 39 H -0.29 -1.73 7.11 99.48 0.71 -1.03 16 40 H -0.30 -1.99 7.11 99.48 0.71 -1.28 16 41 H 0.42 0.02 8.96 -92.71 -0.83 -0.81 16 42 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.07 0.14 8.14 -2.39 -0.02 0.13 16 45 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 Total: 0.00 -32.67 371.68 -6.29 -38.96 By element: Atomic # 1 Polarization: -21.71 SS G_CDS: -3.60 Total: -25.31 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 4.49 Total: 7.28 kcal Atomic # 7 Polarization: 6.31 SS G_CDS: -7.25 Total: -0.95 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -2.03 Total: -22.36 kcal Atomic # 14 Polarization: 0.28 SS G_CDS: 2.10 Total: 2.38 kcal Total: -32.67 -6.29 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567774_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.639 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds