Wall clock time and date at job start Sun Mar 7 2021 07:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34774 * 1 3 3 O 1.21586 * 120.00048 * 2 1 4 4 N 1.34773 * 119.99940 * 180.02562 * 2 1 3 5 5 C 1.46506 * 119.99969 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47194 * 34.71875 * 5 4 2 7 7 C 1.52993 * 109.47100 * 154.71955 * 5 4 2 8 8 C 1.53006 * 109.47061 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47260 * 300.00424 * 8 7 5 10 10 H 1.09004 * 109.47226 * 299.99900 * 9 8 7 11 11 N 1.46496 * 109.47431 * 179.97438 * 9 8 7 12 12 C 1.34772 * 120.00529 * 155.00035 * 11 9 8 13 13 O 1.21289 * 119.99552 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00317 * 180.02562 * 12 11 9 15 15 O 1.42904 * 109.47074 * 179.97438 * 14 12 11 16 16 C 1.35898 * 116.99722 * 179.97438 * 15 14 12 17 17 C 1.38730 * 120.05652 * 359.72964 * 16 15 14 18 18 C 1.38153 * 119.94042 * 179.73974 * 17 16 15 19 19 C 1.38259 * 120.05495 * 0.51111 * 18 17 16 20 20 C 1.50708 * 119.94322 * 179.74259 * 19 18 17 21 21 O 1.42897 * 109.47166 * 120.02138 * 20 19 18 22 22 Si 1.86294 * 109.46964 * 0.02562 * 20 19 18 23 23 C 1.38264 * 120.11681 * 359.76177 * 19 18 17 24 24 C 1.38143 * 120.05420 * 359.97438 * 23 19 18 25 25 C 1.52996 * 109.47253 * 59.99476 * 9 8 7 26 26 C 1.52997 * 109.46691 * 274.72265 * 5 4 2 27 27 H 0.97004 * 120.00041 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00537 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00161 * 359.72198 * 4 2 1 30 30 H 1.08996 * 109.47599 * 300.00068 * 7 5 4 31 31 H 1.09001 * 109.47077 * 60.00676 * 7 5 4 32 32 H 1.08999 * 109.47016 * 60.00053 * 8 7 5 33 33 H 1.08998 * 109.47401 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99630 * 335.00044 * 11 9 8 35 35 H 1.09000 * 109.46816 * 299.99346 * 14 12 11 36 36 H 1.08998 * 109.47485 * 59.99817 * 14 12 11 37 37 H 1.07998 * 120.02981 * 359.97438 * 17 16 15 38 38 H 1.07999 * 119.96767 * 180.22741 * 18 17 16 39 39 H 1.08993 * 109.47254 * 240.02070 * 20 19 18 40 40 H 0.96703 * 113.99720 * 300.00413 * 21 20 19 41 41 H 1.48501 * 110.00468 * 58.68019 * 22 20 19 42 42 H 1.48505 * 110.00180 * 180.02562 * 22 20 19 43 43 H 1.07999 * 119.97546 * 179.97438 * 23 19 18 44 44 H 1.08002 * 120.03263 * 180.02562 * 24 23 19 45 45 H 1.08999 * 109.46985 * 60.00395 * 25 9 8 46 46 H 1.09005 * 109.47475 * 180.02562 * 25 9 8 47 47 H 1.09001 * 109.47659 * 299.99430 * 26 5 4 48 48 H 1.08995 * 109.47574 * 60.00208 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9557 1.0530 0.0000 4 7 2.0216 -1.1672 -0.0005 5 6 3.4867 -1.1672 0.0000 6 1 3.8498 -0.3229 0.5860 7 6 3.9964 -2.4719 0.6154 8 6 5.5264 -2.4722 0.6154 9 6 6.0365 -2.3527 -0.8222 10 1 5.6730 -3.1970 -1.4080 11 7 7.5015 -2.3524 -0.8221 12 6 8.1755 -2.7562 -1.9171 13 8 7.5692 -3.1205 -2.9024 14 6 9.6825 -2.7564 -1.9168 15 8 10.1590 -3.2231 -3.1806 16 6 11.5063 -3.2844 -3.3476 17 6 12.3523 -2.8979 -2.3182 18 6 13.7216 -2.9663 -2.4886 19 6 14.2489 -3.4094 -3.6874 20 6 15.7430 -3.4775 -3.8726 21 8 16.1273 -4.8249 -4.1533 22 14 16.5885 -2.9023 -2.3154 23 6 13.4079 -3.7899 -4.7168 24 6 12.0380 -3.7286 -4.5496 25 6 5.5267 -1.0480 -1.4375 26 6 3.9971 -1.0475 -1.4373 27 1 -0.4850 -0.8401 -0.0004 28 1 -0.4851 0.8400 0.0004 29 1 1.5366 -2.0073 0.0032 30 1 3.6327 -2.5572 1.6393 31 1 3.6334 -3.3162 0.0293 32 1 5.8899 -1.6278 1.2011 33 1 5.8897 -3.4019 1.0533 34 1 7.9863 -2.0614 -0.0340 35 1 10.0459 -1.7436 -1.7427 36 1 10.0457 -3.4136 -1.1267 37 1 11.9408 -2.5474 -1.3832 38 1 14.3805 -2.6690 -1.6863 39 1 16.0358 -2.8357 -4.7034 40 1 15.8973 -5.4531 -3.4549 41 1 16.1730 -3.7498 -1.1689 42 1 18.0625 -2.9641 -2.4852 43 1 13.8223 -4.1353 -5.6524 44 1 11.3815 -4.0263 -5.3538 45 1 5.8901 -0.2037 -0.8517 46 1 5.8897 -0.9631 -2.4618 47 1 3.6341 -1.8917 -2.0234 48 1 3.6340 -0.1179 -1.8756 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567774_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:56:14 Heat of formation + Delta-G solvation = -118.715340 kcal Electronic energy + Delta-G solvation = -29851.133218 eV Core-core repulsion = 25486.275319 eV Total energy + Delta-G solvation = -4364.857899 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64434 -41.21304 -40.65185 -39.33946 -38.73077 -37.23624 -36.03021 -34.83461 -33.64992 -32.38849 -31.85354 -31.73818 -30.32745 -28.41787 -26.21023 -24.24119 -23.92091 -23.50336 -22.35592 -21.88047 -21.59504 -21.14852 -19.49985 -19.19776 -18.53584 -18.33462 -18.07089 -17.42465 -17.29191 -16.87500 -16.44921 -16.25862 -16.18912 -16.08212 -15.74053 -15.56792 -15.42178 -15.09616 -15.00355 -14.75138 -14.61262 -14.36860 -14.09836 -13.75460 -13.62702 -13.49341 -13.40669 -13.23599 -12.73252 -12.46273 -12.28662 -12.16599 -12.13337 -12.04668 -11.63294 -11.54137 -11.50571 -11.44720 -10.96533 -10.72047 -10.58646 -10.17393 -10.03224 -9.95935 -9.22874 -4.89979 0.27800 0.31431 1.34501 1.45449 1.49290 1.62079 1.95711 1.99217 2.16485 2.61004 2.65528 3.44382 3.51013 3.61333 3.64437 3.67751 3.74821 3.83282 3.95391 3.97973 4.04622 4.09796 4.12246 4.17703 4.31577 4.36755 4.37596 4.43477 4.44299 4.56626 4.68632 4.70788 4.73032 4.94865 4.97872 5.06382 5.10330 5.12374 5.16483 5.25244 5.26135 5.28432 5.45415 5.49843 5.56188 5.70432 5.89879 6.03482 6.27560 6.49278 6.51264 7.10034 7.15210 7.65551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.648 6.648 4 N -0.730 5.730 5 C 0.164 3.836 6 H 0.073 0.927 7 C -0.115 4.115 8 C -0.114 4.114 9 C 0.148 3.852 10 H 0.072 0.928 11 N -0.705 5.705 12 C 0.512 3.488 13 O -0.572 6.572 14 C 0.036 3.964 15 O -0.320 6.320 16 C 0.121 3.879 17 C -0.200 4.200 18 C -0.075 4.075 19 C -0.159 4.159 20 C -0.082 4.082 21 O -0.551 6.551 22 Si 0.771 3.229 23 C -0.060 4.060 24 C -0.167 4.167 25 C -0.121 4.121 26 C -0.122 4.122 27 H 0.414 0.586 28 H 0.418 0.582 29 H 0.413 0.587 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.422 0.578 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.386 0.614 41 H -0.278 1.278 42 H -0.307 1.307 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -0.990 8.667 8.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.394 3.606 3 O -0.530 6.530 4 N -0.386 5.386 5 C 0.058 3.942 6 H 0.091 0.909 7 C -0.154 4.154 8 C -0.152 4.152 9 C 0.044 3.956 10 H 0.090 0.910 11 N -0.359 5.359 12 C 0.298 3.702 13 O -0.451 6.451 14 C -0.042 4.042 15 O -0.234 6.234 16 C 0.076 3.924 17 C -0.218 4.218 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.191 4.191 21 O -0.360 6.360 22 Si 0.677 3.323 23 C -0.079 4.079 24 C -0.186 4.186 25 C -0.161 4.161 26 C -0.161 4.161 27 H 0.245 0.755 28 H 0.251 0.749 29 H 0.249 0.751 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.260 0.740 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.235 0.765 41 H -0.204 1.204 42 H -0.236 1.236 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.231 -0.472 7.943 8.052 hybrid contribution -0.778 -1.324 -0.317 1.568 sum -2.009 -1.797 7.626 8.089 Atomic orbital electron populations 1.42873 1.04287 1.13830 1.81080 1.16293 0.82973 0.84173 0.77168 1.90949 1.69130 1.32483 1.60429 1.45044 1.07182 1.07103 1.79255 1.20855 0.78094 0.99707 0.95544 0.90909 1.21715 0.95319 0.95735 1.02606 1.21717 0.94991 1.04772 0.93761 1.21009 0.78767 0.97525 0.98331 0.90982 1.45737 1.07211 1.66669 1.16289 1.20563 0.89859 0.76637 0.83095 1.90768 1.71000 1.48220 1.35081 1.22769 0.90997 1.04201 0.86237 1.86131 1.19664 1.81588 1.35973 1.19224 0.81789 0.96342 0.95083 1.21506 0.93748 1.06526 1.00010 1.21070 0.95012 0.96653 0.96525 1.20293 0.96175 1.04378 0.95102 1.25245 0.93587 0.86625 1.13629 1.86568 1.83165 1.17932 1.48302 0.94132 0.75787 0.89359 0.73070 1.20899 0.91461 0.96305 0.99195 1.20620 0.95641 1.05492 0.96830 1.21795 0.95072 0.98387 1.00816 1.21808 0.95179 1.01608 0.97548 0.75526 0.74933 0.75070 0.89000 0.90034 0.89411 0.88778 0.74017 0.85580 0.85537 0.81700 0.82906 0.86148 0.76527 1.20403 1.23612 0.84937 0.85675 0.90733 0.93588 0.91454 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.71 8.88 -184.75 -1.64 2.07 16 2 C 0.70 2.65 8.81 179.06 1.58 4.22 16 3 O -0.65 -9.58 16.84 -3.99 -0.07 -9.64 16 4 N -0.73 2.02 5.08 -457.83 -2.33 -0.31 16 5 C 0.16 -0.32 2.46 44.99 0.11 -0.21 16 6 H 0.07 0.17 7.57 -2.39 -0.02 0.16 16 7 C -0.12 0.96 5.39 30.59 0.16 1.13 16 8 C -0.11 1.06 5.39 30.60 0.16 1.22 16 9 C 0.15 -0.49 2.45 44.99 0.11 -0.38 16 10 H 0.07 0.11 7.58 -2.38 -0.02 0.09 16 11 N -0.71 3.91 5.08 -442.54 -2.25 1.66 16 12 C 0.51 0.94 7.87 87.66 0.69 1.63 16 13 O -0.57 -7.89 16.16 15.98 0.26 -7.63 16 14 C 0.04 -0.14 5.22 71.23 0.37 0.23 16 15 O -0.32 -1.78 9.67 -73.37 -0.71 -2.49 16 16 C 0.12 0.38 6.69 22.51 0.15 0.53 16 17 C -0.20 0.61 9.04 22.37 0.20 0.81 16 18 C -0.08 0.24 8.66 22.25 0.19 0.43 16 19 C -0.16 0.00 5.39 -19.85 -0.11 -0.10 16 20 C -0.08 0.06 2.82 71.24 0.20 0.26 16 21 O -0.55 -1.57 12.77 -148.98 -1.90 -3.47 16 22 Si 0.77 -2.47 29.78 68.60 2.04 -0.43 16 23 C -0.06 -0.17 9.60 22.25 0.21 0.04 16 24 C -0.17 -0.81 9.99 22.37 0.22 -0.59 16 25 C -0.12 -0.07 5.49 30.58 0.17 0.10 16 26 C -0.12 -0.18 5.49 30.58 0.17 -0.01 16 27 H 0.41 -4.71 8.84 -92.71 -0.82 -5.53 16 28 H 0.42 -1.97 8.93 -92.71 -0.83 -2.80 16 29 H 0.41 -3.87 8.62 -92.70 -0.80 -4.67 16 30 H 0.09 -0.94 8.14 -2.39 -0.02 -0.95 16 31 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 34 H 0.42 -5.66 8.60 -92.71 -0.80 -6.46 16 35 H 0.13 -1.31 7.65 -2.39 -0.02 -1.33 16 36 H 0.13 -1.36 7.68 -2.39 -0.02 -1.38 16 37 H 0.17 -1.74 6.30 -2.91 -0.02 -1.76 16 38 H 0.15 -1.27 4.87 -2.91 -0.01 -1.28 16 39 H 0.12 -0.21 7.96 -2.39 -0.02 -0.23 16 40 H 0.39 -1.10 8.70 -74.06 -0.64 -1.74 16 41 H -0.28 0.10 7.11 99.48 0.71 0.81 16 42 H -0.31 -1.62 7.11 99.48 0.71 -0.91 16 43 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.13 0.70 8.06 -2.91 -0.02 0.67 16 45 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.05 0.28 8.14 -2.38 -0.02 0.27 16 47 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 Total: 0.00 -35.49 393.78 -4.79 -40.28 By element: Atomic # 1 Polarization: -26.55 SS G_CDS: -2.80 Total: -29.35 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 4.60 Total: 9.32 kcal Atomic # 7 Polarization: 9.63 SS G_CDS: -6.21 Total: 3.42 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -2.42 Total: -23.24 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.04 Total: -0.43 kcal Total: -35.49 -4.79 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567774_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.435 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds