Wall clock time and date at job start Sun Mar 7 2021 07:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21592 * 119.99610 * 2 1 4 4 N 1.34770 * 120.00242 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00256 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.46845 * 325.00694 * 5 4 2 7 7 C 1.53006 * 109.47249 * 84.99846 * 5 4 2 8 8 C 1.52997 * 109.47164 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46978 * 299.99874 * 8 7 5 10 10 H 1.08992 * 109.47056 * 300.00064 * 9 8 7 11 11 N 1.46505 * 109.46958 * 180.02562 * 9 8 7 12 12 C 1.34777 * 119.99797 * 84.99979 * 11 9 8 13 13 O 1.21278 * 120.00140 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99981 * 179.97438 * 12 11 9 15 15 N 1.46499 * 109.47276 * 180.02562 * 14 12 11 16 16 C 1.36831 * 125.06167 * 264.69647 * 15 14 12 17 17 C 1.34243 * 109.93594 * 179.81073 * 16 15 14 18 18 C 1.50703 * 126.49838 * 180.13399 * 17 16 15 19 19 O 1.42904 * 109.46720 * 105.36535 * 18 17 16 20 20 Si 1.86296 * 109.47175 * 345.36217 * 18 17 16 21 21 C 1.46488 * 106.99902 * 0.43998 * 17 16 15 22 22 C 1.39592 * 134.03609 * 179.70256 * 21 17 16 23 23 C 1.36666 * 119.76262 * 180.02562 * 22 21 17 24 24 C 1.38782 * 120.52842 * 359.95558 * 23 22 21 25 25 C 1.37791 * 120.66997 * 0.04830 * 24 23 22 26 26 C 1.37691 * 125.05957 * 85.00563 * 15 14 12 27 27 C 1.52996 * 109.46891 * 60.00410 * 9 8 7 28 28 C 1.52997 * 109.47473 * 205.00145 * 5 4 2 29 29 H 0.97007 * 120.00109 * 179.97438 * 1 2 3 30 30 H 0.97001 * 120.00257 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00370 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.47002 * 60.00085 * 7 5 4 33 33 H 1.09000 * 109.47050 * 300.00351 * 7 5 4 34 34 H 1.09002 * 109.47045 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47375 * 59.99966 * 8 7 5 36 36 H 0.97001 * 119.99745 * 265.00017 * 11 9 8 37 37 H 1.08998 * 109.47252 * 300.00615 * 14 12 11 38 38 H 1.09005 * 109.46927 * 60.00159 * 14 12 11 39 39 H 1.08000 * 125.03340 * 359.97438 * 16 15 14 40 40 H 1.09002 * 109.46871 * 225.35880 * 18 17 16 41 41 H 0.96694 * 113.99891 * 299.99710 * 19 18 17 42 42 H 1.48506 * 109.99739 * 179.97438 * 20 18 17 43 43 H 1.48493 * 110.00128 * 301.31703 * 20 18 17 44 44 H 1.07995 * 120.11484 * 0.02562 * 22 21 17 45 45 H 1.07997 * 119.73402 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.66505 * 180.02562 * 24 23 22 47 47 H 1.08002 * 120.11024 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.47368 * 179.97438 * 27 9 8 49 49 H 1.09001 * 109.47372 * 59.99964 * 27 9 8 50 50 H 1.09002 * 109.47153 * 59.99757 * 28 5 4 51 51 H 1.09001 * 109.46832 * 299.99948 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9556 1.0531 0.0000 4 7 2.0216 -1.1671 0.0005 5 6 3.4866 -1.1671 0.0011 6 1 3.8501 -0.3254 -0.5883 7 6 3.9961 -1.0410 1.4383 8 6 5.5261 -1.0404 1.4388 9 6 6.0368 -2.3476 0.8295 10 1 5.6736 -3.1894 1.4189 11 7 7.5019 -2.3473 0.8306 12 6 8.1750 -2.7464 1.9279 13 8 7.5680 -3.1062 2.9142 14 6 9.6820 -2.7466 1.9288 15 7 10.1695 -3.2193 3.2269 16 6 10.5286 -2.4133 4.2727 17 6 10.9254 -3.1631 5.3131 18 6 11.3960 -2.6593 6.6532 19 8 10.3722 -2.8701 7.6276 20 14 11.7750 -0.8392 6.5342 21 6 10.8212 -4.5635 4.8963 22 6 11.0891 -5.7838 5.5190 23 6 10.8823 -6.9517 4.8401 24 6 10.4070 -6.9346 3.5363 25 6 10.1361 -5.7415 2.9026 26 6 10.3402 -4.5408 3.5741 27 6 5.5274 -2.4736 -0.6076 28 6 3.9969 -2.4745 -0.6081 29 1 -0.4851 -0.8401 -0.0004 30 1 -0.4850 0.8400 -0.0004 31 1 1.5367 -2.0073 0.0005 32 1 3.6326 -1.8827 2.0278 33 1 3.6326 -0.1096 1.8723 34 1 5.8890 -0.9510 2.4628 35 1 5.8893 -0.1985 0.8494 36 1 7.9873 -2.0598 0.0415 37 1 10.0457 -3.4072 1.1419 38 1 10.0455 -1.7345 1.7504 39 1 10.4950 -1.3339 4.2635 40 1 12.2956 -3.1992 6.9489 41 1 9.5409 -2.4180 7.4287 42 1 12.2396 -0.3301 7.8497 43 1 12.8157 -0.6035 5.5016 44 1 11.4585 -5.8048 6.5336 45 1 11.0901 -7.8955 5.3222 46 1 10.2482 -7.8660 3.0130 47 1 9.7669 -5.7387 1.8876 48 1 5.8916 -3.4047 -1.0420 49 1 5.8906 -1.6317 -1.1970 50 1 3.6340 -2.5644 -1.6319 51 1 3.6334 -3.3162 -0.0186 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567774_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:57:56 Heat of formation + Delta-G solvation = -41.780758 kcal Electronic energy + Delta-G solvation = -33923.874630 eV Core-core repulsion = 29403.619246 eV Total energy + Delta-G solvation = -4520.255384 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.52166 -41.31661 -40.67473 -39.02948 -38.08801 -37.59588 -35.99586 -34.82321 -34.13913 -33.46212 -31.83199 -31.48552 -30.23520 -29.73783 -28.31458 -25.76629 -23.96505 -23.90318 -23.49834 -22.58948 -21.87602 -21.53862 -21.18709 -20.62214 -19.21414 -18.61194 -18.39915 -18.18871 -17.78840 -17.34872 -16.92245 -16.44182 -16.37466 -16.24538 -16.15096 -15.95821 -15.62909 -15.36567 -15.31448 -15.06294 -14.90180 -14.78714 -14.68796 -14.39133 -14.10143 -14.01542 -13.69215 -13.57972 -13.25606 -13.12447 -12.73626 -12.69551 -12.56706 -12.42257 -12.24269 -12.15039 -12.11492 -11.80846 -11.53182 -11.49672 -11.43732 -11.06222 -10.71608 -10.53892 -10.30708 -10.11305 -9.94937 -9.15307 -8.61946 -5.00110 0.14457 0.63751 1.36267 1.42629 1.52644 1.68228 1.71792 1.94503 1.99129 2.16842 2.27261 2.94772 3.56597 3.60440 3.64352 3.66599 3.69547 3.72213 3.77409 3.88890 4.00559 4.06152 4.13293 4.17856 4.18965 4.22085 4.30654 4.38618 4.39444 4.46045 4.47639 4.56377 4.70744 4.71759 4.74480 4.78872 4.88625 4.96602 5.08033 5.11965 5.13234 5.13478 5.27320 5.30356 5.49974 5.50592 5.56863 5.65928 5.73650 5.75646 5.89864 6.03612 6.20696 6.25335 6.54208 6.81231 7.09827 7.21124 7.65716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.696 3.304 3 O -0.647 6.647 4 N -0.730 5.730 5 C 0.163 3.837 6 H 0.072 0.928 7 C -0.122 4.122 8 C -0.118 4.118 9 C 0.150 3.850 10 H 0.068 0.932 11 N -0.709 5.709 12 C 0.493 3.507 13 O -0.567 6.567 14 C 0.086 3.914 15 N -0.466 5.466 16 C 0.079 3.921 17 C -0.226 4.226 18 C -0.046 4.046 19 O -0.564 6.564 20 Si 0.791 3.209 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.154 4.154 24 C -0.108 4.108 25 C -0.132 4.132 26 C 0.091 3.909 27 C -0.115 4.115 28 C -0.116 4.116 29 H 0.414 0.586 30 H 0.418 0.582 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.420 0.580 37 H 0.142 0.858 38 H 0.163 0.837 39 H 0.207 0.793 40 H 0.092 0.908 41 H 0.390 0.610 42 H -0.301 1.301 43 H -0.274 1.274 44 H 0.115 0.885 45 H 0.135 0.865 46 H 0.146 0.854 47 H 0.135 0.865 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -0.520 -9.586 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.394 3.606 3 O -0.529 6.529 4 N -0.386 5.386 5 C 0.058 3.942 6 H 0.091 0.909 7 C -0.161 4.161 8 C -0.157 4.157 9 C 0.045 3.955 10 H 0.086 0.914 11 N -0.362 5.362 12 C 0.278 3.722 13 O -0.445 6.445 14 C -0.038 4.038 15 N -0.148 5.148 16 C -0.046 4.046 17 C -0.233 4.233 18 C -0.155 4.155 19 O -0.371 6.371 20 Si 0.695 3.305 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.173 4.173 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.014 4.014 27 C -0.153 4.153 28 C -0.154 4.154 29 H 0.244 0.756 30 H 0.251 0.749 31 H 0.249 0.751 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.258 0.742 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.223 0.777 40 H 0.109 0.891 41 H 0.239 0.761 42 H -0.229 1.229 43 H -0.200 1.200 44 H 0.133 0.867 45 H 0.153 0.847 46 H 0.164 0.836 47 H 0.153 0.847 48 H 0.109 0.891 49 H 0.105 0.895 50 H 0.108 0.892 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.152 0.374 -8.857 9.122 hybrid contribution -0.423 -0.973 0.275 1.096 sum -2.575 -0.599 -8.581 8.979 Atomic orbital electron populations 1.42882 1.04326 1.13818 1.81094 1.16286 0.82951 0.84176 0.77165 1.90949 1.69116 1.32435 1.60417 1.45058 1.07237 1.07083 1.79266 1.20861 0.78045 0.99567 0.95723 0.90943 1.21813 0.95494 1.01510 0.97317 1.21770 0.94743 0.98237 1.00977 1.20932 0.79292 0.97395 0.97885 0.91379 1.45878 1.07044 1.66823 1.16408 1.21362 0.91016 0.76688 0.83105 1.90805 1.70700 1.48088 1.34938 1.22002 0.90373 1.06790 0.84673 1.43439 1.54958 1.03432 1.12978 1.22060 0.99132 0.97426 0.86020 1.20791 1.13389 0.91611 0.97532 1.24673 0.92661 1.12911 0.85239 1.86438 1.26029 1.77297 1.47380 0.93984 0.85208 0.73618 0.77666 1.19373 1.04878 0.93905 0.94095 1.20437 0.99733 0.91353 0.99517 1.20906 1.02562 0.98148 0.95690 1.21126 0.98790 0.97875 0.94946 1.20260 1.04756 0.89533 1.00703 1.18395 1.02542 0.85588 0.94888 1.21718 0.94874 1.04560 0.94173 1.21718 0.95477 0.95724 1.02491 0.75558 0.74935 0.75147 0.91672 0.93623 0.93192 0.90772 0.74217 0.83989 0.81942 0.77671 0.89054 0.76066 1.22892 1.20008 0.86735 0.84712 0.83615 0.84704 0.89078 0.89521 0.89248 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 4.01 8.88 -184.75 -1.64 2.37 16 2 C 0.70 2.28 8.80 179.06 1.58 3.86 16 3 O -0.65 -9.11 16.84 -4.00 -0.07 -9.18 16 4 N -0.73 2.36 5.08 -457.82 -2.33 0.04 16 5 C 0.16 -0.44 2.45 44.99 0.11 -0.33 16 6 H 0.07 0.12 7.58 -2.39 -0.02 0.10 16 7 C -0.12 -0.02 5.49 30.60 0.17 0.15 16 8 C -0.12 0.19 5.49 30.59 0.17 0.36 16 9 C 0.15 -0.77 2.45 44.99 0.11 -0.66 16 10 H 0.07 0.02 7.57 -2.39 -0.02 0.00 16 11 N -0.71 5.83 5.08 -442.54 -2.25 3.58 16 12 C 0.49 -1.14 7.86 87.66 0.69 -0.45 16 13 O -0.57 -5.19 16.08 -3.02 -0.05 -5.24 16 14 C 0.09 -0.67 6.48 85.63 0.56 -0.12 16 15 N -0.47 -0.64 2.27 -519.99 -1.18 -1.82 16 16 C 0.08 0.07 9.89 83.00 0.82 0.89 16 17 C -0.23 -1.41 5.58 -18.62 -0.10 -1.52 16 18 C -0.05 -0.23 3.06 71.24 0.22 -0.01 16 19 O -0.56 -4.00 12.88 -148.98 -1.92 -5.92 16 20 Si 0.79 -0.40 30.75 68.60 2.11 1.71 16 21 C -0.12 -1.26 6.35 -20.20 -0.13 -1.39 16 22 C -0.09 -0.97 10.05 22.23 0.22 -0.75 16 23 C -0.15 -1.13 9.97 22.03 0.22 -0.91 16 24 C -0.11 -0.55 10.01 22.29 0.22 -0.32 16 25 C -0.13 -0.67 10.00 22.37 0.22 -0.45 16 26 C 0.09 0.67 6.80 39.03 0.27 0.93 16 27 C -0.11 1.16 5.39 30.61 0.17 1.32 16 28 C -0.12 1.01 5.39 30.61 0.17 1.18 16 29 H 0.41 -4.81 8.84 -92.70 -0.82 -5.63 16 30 H 0.42 -2.12 8.93 -92.71 -0.83 -2.95 16 31 H 0.41 -3.96 8.62 -92.70 -0.80 -4.76 16 32 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.04 0.27 8.14 -2.39 -0.02 0.26 16 34 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.42 -6.49 8.60 -92.71 -0.80 -7.29 16 37 H 0.14 -1.80 8.14 -2.39 -0.02 -1.82 16 38 H 0.16 -2.57 8.12 -2.38 -0.02 -2.59 16 39 H 0.21 -1.60 6.34 -2.91 -0.02 -1.61 16 40 H 0.09 0.67 7.96 -2.39 -0.02 0.66 16 41 H 0.39 -0.10 8.70 -74.06 -0.64 -0.74 16 42 H -0.30 -2.16 7.11 99.48 0.71 -1.45 16 43 H -0.27 -0.69 7.11 99.48 0.71 0.01 16 44 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 46 H 0.15 -0.05 8.06 -2.91 -0.02 -0.07 16 47 H 0.14 -0.03 8.06 -2.91 -0.02 -0.05 16 48 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 49 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 50 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 51 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 Total: 0.00 -38.50 420.38 -4.49 -42.99 By element: Atomic # 1 Polarization: -27.49 SS G_CDS: -2.84 Total: -30.32 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.67 Total: 1.79 kcal Atomic # 7 Polarization: 11.57 SS G_CDS: -7.39 Total: 4.17 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -2.03 Total: -20.34 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.11 Total: 1.71 kcal Total: -38.50 -4.49 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567774_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.207 kcal (2) G-P(sol) polarization free energy of solvation -38.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds