Wall clock time and date at job start Sun Mar 7 2021 13:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89337 * 111.45735 * 234.93204 * 2 1 3 5 5 C 1.55354 * 101.26840 * 245.87519 * 4 2 1 6 6 C 1.53571 * 111.29225 * 331.36401 * 5 4 2 7 7 N 1.46496 * 109.43441 * 169.07411 * 6 5 4 8 8 C 1.34776 * 119.99746 * 84.98324 * 7 6 5 9 9 O 1.21718 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.46563 * 120.00029 * 179.97438 * 8 7 6 11 11 C 1.40853 * 126.57987 * 179.97438 * 10 8 7 12 12 C 1.40090 * 132.86989 * 0.02562 * 11 10 8 13 13 C 1.36449 * 119.25716 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.29456 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47193 * 119.95105 * 14 13 12 16 16 Si 1.86299 * 109.47302 * 239.95543 * 14 13 12 17 17 H 1.48500 * 109.46980 * 299.99900 * 16 14 13 18 18 H 1.48501 * 109.47101 * 59.99783 * 16 14 13 19 19 H 1.48499 * 109.47385 * 180.02562 * 16 14 13 20 20 C 1.40157 * 119.41123 * 359.95350 * 13 12 11 21 21 C 1.35190 * 120.31497 * 0.04197 * 20 13 12 22 22 N 1.36235 * 120.70743 * 359.97438 * 21 20 13 23 23 N 1.40024 * 132.01228 * 179.97438 * 22 21 20 24 24 C 1.30741 * 109.60545 * 179.70762 * 23 22 21 25 25 C 1.55920 * 109.50277 * 49.07554 * 6 5 4 26 26 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 27 27 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 30 30 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 32 32 H 1.08995 * 111.04726 * 3.87869 * 4 2 1 33 33 H 1.08996 * 111.04757 * 127.85090 * 4 2 1 34 34 H 1.09003 * 109.09427 * 210.89936 * 5 4 2 35 35 H 1.09001 * 109.15340 * 91.87280 * 5 4 2 36 36 H 1.08995 * 109.47161 * 289.05471 * 6 5 4 37 37 H 0.96996 * 120.00087 * 264.98187 * 7 6 5 38 38 H 1.08004 * 120.36682 * 359.97109 * 12 11 10 39 39 H 1.09008 * 109.47184 * 359.95669 * 14 13 12 40 40 H 0.96694 * 114.00380 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.84094 * 180.02562 * 20 13 12 42 42 H 1.08007 * 119.64478 * 179.97438 * 21 20 13 43 43 H 1.07995 * 125.62680 * 180.26433 * 24 23 22 44 44 H 1.08998 * 111.42335 * 201.85232 * 25 6 5 45 45 H 1.08994 * 111.47224 * 76.92847 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 -1.4423 5 6 3.2462 -2.1820 -0.6881 6 6 3.7194 -1.7445 0.7058 7 7 4.1230 -2.9236 1.4759 8 6 5.3706 -3.4171 1.3482 9 8 6.1619 -2.8834 0.5928 10 6 5.7746 -4.5964 2.1190 11 6 7.0349 -5.2249 2.0929 12 6 8.2171 -4.9611 1.3891 13 6 9.3004 -5.7687 1.5788 14 6 10.5837 -5.5068 0.8334 15 8 11.6364 -5.2624 1.7684 16 14 11.0107 -6.9909 -0.2086 17 1 11.1805 -8.1782 0.6671 18 1 9.9168 -7.2448 -1.1803 19 1 12.2756 -6.7331 -0.9426 20 6 9.2093 -6.8438 2.4734 21 6 8.0581 -7.0795 3.1420 22 7 6.9710 -6.2790 2.9591 23 7 5.6858 -6.3026 3.5143 24 6 4.9807 -5.3136 3.0305 25 6 2.5568 -1.0141 1.4447 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.1907 2.2612 0.8899 30 1 3.6274 1.7027 -0.0005 31 1 2.1908 2.2612 -0.8900 32 1 1.7543 -1.3787 -2.0838 33 1 3.2797 -0.4331 -2.0151 34 1 4.1055 -2.5213 -1.2667 35 1 2.5407 -3.0062 -0.5835 36 1 4.5681 -1.0679 0.6057 37 1 3.4923 -3.3490 2.0776 38 1 8.2701 -4.1284 0.7034 39 1 10.4592 -4.6352 0.1906 40 1 12.4939 -5.0861 1.3580 41 1 10.0626 -7.4872 2.6291 42 1 7.9997 -7.9112 3.8285 43 1 3.9560 -5.0876 3.2859 44 1 2.9328 -0.3695 2.2392 45 1 1.8196 -1.7209 1.8253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17626288_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:25:14 Heat of formation + Delta-G solvation = -10.904090 kcal Electronic energy + Delta-G solvation = -25976.092114 eV Core-core repulsion = 22311.453640 eV Total energy + Delta-G solvation = -3664.638473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.21415 -40.32933 -39.14632 -37.32260 -36.95866 -34.22874 -33.31510 -32.09330 -30.39167 -29.33834 -29.12366 -28.51703 -27.23431 -25.18584 -24.48095 -23.53198 -22.88911 -21.21104 -21.04486 -19.12659 -18.52851 -17.93919 -17.50461 -16.93499 -16.81344 -16.64730 -16.02454 -15.82150 -15.69253 -15.28853 -14.94619 -14.73273 -14.38523 -14.29195 -14.10797 -13.99390 -13.97636 -13.66074 -13.51456 -13.30735 -13.27325 -13.01520 -12.93803 -12.69703 -12.65312 -12.41359 -12.25861 -12.03696 -11.86039 -11.58938 -11.46982 -10.90998 -10.89695 -10.73206 -10.51110 -10.43084 -10.22189 -9.82128 -8.68812 -0.51629 -0.05498 0.98594 1.07213 1.16440 1.35224 1.40462 1.51766 1.81019 1.82115 1.85221 2.09878 2.35847 2.64080 2.69124 3.02579 3.20475 3.48378 3.62511 3.75970 3.88601 3.91416 4.08080 4.17566 4.22970 4.30128 4.39143 4.42845 4.54017 4.57234 4.60888 4.67357 4.69680 4.72237 4.73452 4.80852 5.02421 5.09210 5.15626 5.21890 5.30293 5.35390 5.38595 5.43721 5.45569 5.51166 5.71588 5.74073 6.38311 6.41702 6.75517 7.51733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.975 3.025 3 C -0.444 4.444 4 C -0.396 4.396 5 C -0.127 4.127 6 C 0.151 3.849 7 N -0.721 5.721 8 C 0.599 3.401 9 O -0.552 6.552 10 C -0.316 4.316 11 C 0.167 3.833 12 C -0.092 4.092 13 C -0.032 4.032 14 C -0.083 4.083 15 O -0.541 6.541 16 Si 0.947 3.053 17 H -0.243 1.243 18 H -0.247 1.247 19 H -0.246 1.246 20 C -0.145 4.145 21 C 0.114 3.886 22 N -0.265 5.265 23 N -0.314 5.314 24 C 0.119 3.881 25 C -0.410 4.410 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.398 0.602 38 H 0.165 0.835 39 H 0.084 0.916 40 H 0.385 0.615 41 H 0.164 0.836 42 H 0.178 0.822 43 H 0.198 0.802 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 -0.451 -0.505 0.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.172 2.828 3 C -0.552 4.552 4 C -0.483 4.483 5 C -0.166 4.166 6 C 0.047 3.953 7 N -0.372 5.372 8 C 0.388 3.612 9 O -0.431 6.431 10 C -0.330 4.330 11 C 0.046 3.954 12 C -0.112 4.112 13 C -0.037 4.037 14 C -0.192 4.192 15 O -0.348 6.348 16 Si 0.766 3.234 17 H -0.166 1.166 18 H -0.170 1.170 19 H -0.169 1.169 20 C -0.167 4.167 21 C -0.012 4.012 22 N -0.029 5.029 23 N -0.134 5.134 24 C -0.062 4.062 25 C -0.495 4.495 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.232 0.768 38 H 0.182 0.818 39 H 0.102 0.898 40 H 0.233 0.767 41 H 0.181 0.819 42 H 0.195 0.805 43 H 0.215 0.785 44 H 0.103 0.897 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.034 -1.863 -0.250 1.880 hybrid contribution 0.038 0.759 -0.198 0.785 sum 0.004 -1.104 -0.448 1.192 Atomic orbital electron populations 1.26008 1.19793 1.04628 1.04566 0.80389 0.67440 0.67493 0.67440 1.26028 1.06821 1.17802 1.04571 1.26462 1.05545 1.06192 1.10067 1.22092 1.00926 0.98576 0.94970 1.21566 0.97355 0.86381 0.90036 1.45849 1.13289 1.31631 1.46394 1.16884 0.81697 0.81910 0.80684 1.90767 1.52050 1.60930 1.39320 1.19655 0.94157 1.06243 1.12994 1.19238 0.95241 0.88933 0.91961 1.20688 0.89343 1.00709 1.00454 1.19410 0.94416 0.94138 0.95740 1.24720 0.87365 1.10202 0.96924 1.86486 1.19887 1.94110 1.34294 0.85752 0.81811 0.77172 0.78658 1.16602 1.17037 1.16877 1.20844 0.97466 1.00017 0.98340 1.21591 0.83429 0.95635 1.00547 1.46102 1.10096 1.19230 1.27498 1.77630 0.87429 1.24596 1.23785 1.24056 0.99593 0.90512 0.92052 1.27137 1.02954 1.08272 1.11153 0.91043 0.91106 0.91020 0.91112 0.90912 0.90986 0.90199 0.90330 0.91280 0.91787 0.89161 0.76822 0.81803 0.89805 0.76668 0.81883 0.80506 0.78524 0.89714 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.93 8.65 101.05 0.87 1.81 16 2 Si 0.98 -2.76 13.35 -169.99 -2.27 -5.03 16 3 C -0.44 0.70 8.65 101.05 0.87 1.57 16 4 C -0.40 0.36 5.86 38.41 0.23 0.58 16 5 C -0.13 -0.08 5.65 -25.19 -0.14 -0.22 16 6 C 0.15 0.08 2.45 -66.08 -0.16 -0.08 16 7 N -0.72 -0.63 5.08 -53.35 -0.27 -0.90 16 8 C 0.60 2.37 7.75 -12.90 -0.10 2.27 16 9 O -0.55 -3.81 15.37 5.17 0.08 -3.73 16 10 C -0.32 -1.09 6.17 -104.68 -0.65 -1.73 16 11 C 0.17 0.65 6.76 -84.07 -0.57 0.08 16 12 C -0.09 -0.25 9.35 -39.53 -0.37 -0.62 16 13 C -0.03 -0.03 4.53 -104.55 -0.47 -0.50 16 14 C -0.08 0.10 2.81 36.01 0.10 0.20 16 15 O -0.54 0.59 12.76 -35.23 -0.45 0.14 16 16 Si 0.95 -1.59 27.25 -169.99 -4.63 -6.22 16 17 H -0.24 0.29 7.04 56.52 0.40 0.68 16 18 H -0.25 0.02 7.11 56.52 0.40 0.42 16 19 H -0.25 0.41 7.11 56.52 0.40 0.81 16 20 C -0.15 0.02 8.67 -39.95 -0.35 -0.32 16 21 C 0.11 0.05 11.17 -16.68 -0.19 -0.13 16 22 N -0.27 -0.85 3.86 -10.54 -0.04 -0.89 16 23 N -0.31 -1.11 12.57 30.75 0.39 -0.72 16 24 C 0.12 0.19 11.44 -17.14 -0.20 -0.01 16 25 C -0.41 0.80 5.47 38.72 0.21 1.01 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 32 H 0.08 -0.10 8.04 -51.93 -0.42 -0.51 16 33 H 0.08 -0.04 8.04 -51.93 -0.42 -0.46 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.09 0.19 7.57 -51.93 -0.39 -0.20 16 37 H 0.40 -0.74 7.50 -40.82 -0.31 -1.05 16 38 H 0.16 0.44 7.01 -52.48 -0.37 0.07 16 39 H 0.08 -0.20 7.71 -51.92 -0.40 -0.60 16 40 H 0.39 -2.09 8.74 45.56 0.40 -1.69 16 41 H 0.16 -0.40 7.50 -52.49 -0.39 -0.79 16 42 H 0.18 -0.44 8.06 -52.48 -0.42 -0.86 16 43 H 0.20 -0.53 7.46 -52.49 -0.39 -0.93 16 44 H 0.08 -0.16 8.06 -51.93 -0.42 -0.58 16 45 H 0.09 -0.25 8.01 -51.93 -0.42 -0.66 16 LS Contribution 374.64 15.07 5.65 5.65 Total: 0.00 -9.49 374.64 -8.53 -18.02 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: -6.07 Total: -10.21 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.90 Total: 3.90 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: 0.08 Total: -2.51 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.37 Total: -3.59 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: -6.90 Total: -11.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -9.49 -8.53 -18.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.114 kcal (2) G-P(sol) polarization free energy of solvation -9.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds