Wall clock time and date at job start Sun Mar 7 2021 13:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89337 * 111.45735 * 234.93204 * 2 1 3 5 5 C 1.55354 * 101.26840 * 245.87519 * 4 2 1 6 6 C 1.53571 * 111.29225 * 331.36401 * 5 4 2 7 7 N 1.46496 * 109.43441 * 169.07411 * 6 5 4 8 8 C 1.34776 * 119.99746 * 84.98324 * 7 6 5 9 9 O 1.21718 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.46563 * 120.00029 * 179.97438 * 8 7 6 11 11 C 1.40853 * 126.57987 * 179.97438 * 10 8 7 12 12 C 1.40090 * 132.86989 * 0.02562 * 11 10 8 13 13 C 1.36449 * 119.25716 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.29456 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47193 * 119.95105 * 14 13 12 16 16 Si 1.86299 * 109.47302 * 239.95543 * 14 13 12 17 17 H 1.48500 * 109.46980 * 299.99900 * 16 14 13 18 18 H 1.48501 * 109.47101 * 59.99783 * 16 14 13 19 19 H 1.48499 * 109.47385 * 180.02562 * 16 14 13 20 20 C 1.40157 * 119.41123 * 359.95350 * 13 12 11 21 21 C 1.35190 * 120.31497 * 0.04197 * 20 13 12 22 22 N 1.36235 * 120.70743 * 359.97438 * 21 20 13 23 23 N 1.40024 * 132.01228 * 179.97438 * 22 21 20 24 24 C 1.30741 * 109.60545 * 179.70762 * 23 22 21 25 25 C 1.55920 * 109.50277 * 49.07554 * 6 5 4 26 26 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 27 27 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 30 30 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 32 32 H 1.08995 * 111.04726 * 3.87869 * 4 2 1 33 33 H 1.08996 * 111.04757 * 127.85090 * 4 2 1 34 34 H 1.09003 * 109.09427 * 210.89936 * 5 4 2 35 35 H 1.09001 * 109.15340 * 91.87280 * 5 4 2 36 36 H 1.08995 * 109.47161 * 289.05471 * 6 5 4 37 37 H 0.96996 * 120.00087 * 264.98187 * 7 6 5 38 38 H 1.08004 * 120.36682 * 359.97109 * 12 11 10 39 39 H 1.09008 * 109.47184 * 359.95669 * 14 13 12 40 40 H 0.96694 * 114.00380 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.84094 * 180.02562 * 20 13 12 42 42 H 1.08007 * 119.64478 * 179.97438 * 21 20 13 43 43 H 1.07995 * 125.62680 * 180.26433 * 24 23 22 44 44 H 1.08998 * 111.42335 * 201.85232 * 25 6 5 45 45 H 1.08994 * 111.47224 * 76.92847 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 -1.4423 5 6 3.2462 -2.1820 -0.6881 6 6 3.7194 -1.7445 0.7058 7 7 4.1230 -2.9236 1.4759 8 6 5.3706 -3.4171 1.3482 9 8 6.1619 -2.8834 0.5928 10 6 5.7746 -4.5964 2.1190 11 6 7.0349 -5.2249 2.0929 12 6 8.2171 -4.9611 1.3891 13 6 9.3004 -5.7687 1.5788 14 6 10.5837 -5.5068 0.8334 15 8 11.6364 -5.2624 1.7684 16 14 11.0107 -6.9909 -0.2086 17 1 11.1805 -8.1782 0.6671 18 1 9.9168 -7.2448 -1.1803 19 1 12.2756 -6.7331 -0.9426 20 6 9.2093 -6.8438 2.4734 21 6 8.0581 -7.0795 3.1420 22 7 6.9710 -6.2790 2.9591 23 7 5.6858 -6.3026 3.5143 24 6 4.9807 -5.3136 3.0305 25 6 2.5568 -1.0141 1.4447 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.1907 2.2612 0.8899 30 1 3.6274 1.7027 -0.0005 31 1 2.1908 2.2612 -0.8900 32 1 1.7543 -1.3787 -2.0838 33 1 3.2797 -0.4331 -2.0151 34 1 4.1055 -2.5213 -1.2667 35 1 2.5407 -3.0062 -0.5835 36 1 4.5681 -1.0679 0.6057 37 1 3.4923 -3.3490 2.0776 38 1 8.2701 -4.1284 0.7034 39 1 10.4592 -4.6352 0.1906 40 1 12.4939 -5.0861 1.3580 41 1 10.0626 -7.4872 2.6291 42 1 7.9997 -7.9112 3.8285 43 1 3.9560 -5.0876 3.2859 44 1 2.9328 -0.3695 2.2392 45 1 1.8196 -1.7209 1.8253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:25:13 Heat of formation + Delta-G solvation = -8.590764 kcal Electronic energy + Delta-G solvation = -25975.991800 eV Core-core repulsion = 22311.453640 eV Total energy + Delta-G solvation = -3664.538160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.33543 -40.54188 -39.17686 -37.28379 -37.11442 -34.34562 -33.42668 -32.19569 -30.46357 -29.26324 -29.00789 -28.34447 -27.26773 -25.24808 -24.49193 -23.66577 -22.94573 -21.28923 -21.21376 -19.21455 -18.47273 -17.99925 -17.56941 -17.08316 -16.96208 -16.65340 -16.01654 -15.88031 -15.73615 -15.46015 -15.10490 -14.68236 -14.35010 -14.31886 -14.13796 -13.85833 -13.81267 -13.54475 -13.38443 -13.34137 -13.14553 -13.07605 -12.94519 -12.63035 -12.58964 -12.41955 -12.22178 -12.11440 -11.86941 -11.64797 -11.57674 -11.07160 -10.77085 -10.75149 -10.50905 -10.41557 -10.19564 -9.96108 -8.82231 -0.62097 -0.15358 0.98738 0.99899 1.09831 1.47664 1.51148 1.65472 1.89637 1.98009 2.02195 2.06111 2.34541 2.47828 2.68752 3.02511 3.17297 3.50228 3.69641 3.71656 3.85881 3.88908 4.00644 4.14635 4.21982 4.32719 4.34504 4.39639 4.51657 4.57147 4.61513 4.76464 4.83525 4.84373 4.90052 4.91489 5.04419 5.09128 5.13014 5.16202 5.23815 5.29276 5.36057 5.50057 5.59168 5.62260 5.66236 5.69534 6.25747 6.65496 6.75436 7.32661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.462 4.462 4 C -0.416 4.416 5 C -0.125 4.125 6 C 0.146 3.854 7 N -0.708 5.708 8 C 0.594 3.406 9 O -0.593 6.593 10 C -0.341 4.341 11 C 0.149 3.851 12 C -0.120 4.120 13 C -0.026 4.026 14 C -0.086 4.086 15 O -0.555 6.555 16 Si 0.987 3.013 17 H -0.243 1.243 18 H -0.276 1.276 19 H -0.241 1.241 20 C -0.147 4.147 21 C 0.110 3.890 22 N -0.274 5.274 23 N -0.339 5.339 24 C 0.131 3.869 25 C -0.413 4.413 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.404 0.596 41 H 0.190 0.810 42 H 0.207 0.793 43 H 0.236 0.764 44 H 0.088 0.912 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 -1.032 0.573 1.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.249 2.751 3 C -0.569 4.569 4 C -0.500 4.500 5 C -0.164 4.164 6 C 0.042 3.958 7 N -0.359 5.359 8 C 0.384 3.616 9 O -0.476 6.476 10 C -0.356 4.356 11 C 0.027 3.973 12 C -0.140 4.140 13 C -0.032 4.032 14 C -0.195 4.195 15 O -0.364 6.364 16 Si 0.807 3.193 17 H -0.166 1.166 18 H -0.201 1.201 19 H -0.164 1.164 20 C -0.168 4.168 21 C -0.015 4.015 22 N -0.037 5.037 23 N -0.159 5.159 24 C -0.050 4.050 25 C -0.497 4.497 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.249 0.751 38 H 0.170 0.830 39 H 0.109 0.891 40 H 0.255 0.745 41 H 0.207 0.793 42 H 0.224 0.776 43 H 0.252 0.748 44 H 0.107 0.893 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.629 -2.445 0.839 2.660 hybrid contribution 0.316 0.922 -0.570 1.129 sum -0.313 -1.523 0.268 1.578 Atomic orbital electron populations 1.26091 1.19882 1.04971 1.04836 0.79186 0.66251 0.65093 0.64536 1.26254 1.06424 1.19414 1.04837 1.26739 1.05548 1.06266 1.11443 1.22065 0.99898 0.99548 0.94854 1.21634 0.97623 0.86059 0.90519 1.45797 1.12589 1.31411 1.46121 1.17106 0.82225 0.81981 0.80302 1.90733 1.53406 1.62241 1.41184 1.19761 0.94823 1.06768 1.14244 1.19535 0.95838 0.89497 0.92406 1.20672 0.90142 1.01599 1.01552 1.19775 0.94689 0.93597 0.95120 1.24811 0.86658 1.11278 0.96710 1.86433 1.20929 1.94200 1.34874 0.85198 0.80628 0.76188 0.77335 1.16607 1.20100 1.16373 1.21211 0.98147 0.99814 0.97583 1.22247 0.82844 0.95791 1.00665 1.46326 1.10612 1.19389 1.27413 1.77556 0.87863 1.25652 1.24829 1.24612 1.00710 0.89140 0.90528 1.27268 1.02074 1.08630 1.11702 0.91043 0.90600 0.90659 0.90641 0.91827 0.90941 0.89676 0.91246 0.94563 0.90985 0.91419 0.75064 0.83006 0.89086 0.74475 0.79262 0.77621 0.74841 0.89305 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.59 8.65 113.37 0.98 3.57 16 2 Si 1.06 -6.45 13.35 68.60 0.92 -5.53 16 3 C -0.46 1.39 8.65 113.37 0.98 2.37 16 4 C -0.42 0.31 5.86 72.79 0.43 0.74 16 5 C -0.12 -0.38 5.65 31.60 0.18 -0.20 16 6 C 0.15 0.35 2.45 46.20 0.11 0.46 16 7 N -0.71 -2.09 5.08 -440.91 -2.24 -4.33 16 8 C 0.59 6.18 7.75 86.41 0.67 6.85 16 9 O -0.59 -10.48 15.37 -4.41 -0.07 -10.55 16 10 C -0.34 -3.01 6.17 -19.90 -0.12 -3.13 16 11 C 0.15 1.48 6.76 39.49 0.27 1.74 16 12 C -0.12 -0.95 9.35 22.30 0.21 -0.74 16 13 C -0.03 -0.07 4.53 -19.82 -0.09 -0.16 16 14 C -0.09 0.18 2.81 71.24 0.20 0.38 16 15 O -0.55 1.45 12.76 -148.98 -1.90 -0.45 16 16 Si 0.99 -3.47 27.25 68.60 1.87 -1.60 16 17 H -0.24 0.86 7.04 99.48 0.70 1.56 16 18 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 19 H -0.24 1.02 7.11 99.48 0.71 1.73 16 20 C -0.15 0.08 8.67 22.03 0.19 0.27 16 21 C 0.11 0.09 11.17 83.31 0.93 1.02 16 22 N -0.27 -2.00 3.86 -187.27 -0.72 -2.72 16 23 N -0.34 -2.52 12.57 -56.62 -0.71 -3.24 16 24 C 0.13 0.47 11.44 85.42 0.98 1.45 16 25 C -0.41 1.86 5.47 72.99 0.40 2.26 16 26 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 27 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 28 H 0.07 -0.44 7.96 -2.38 -0.02 -0.46 16 29 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16 30 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 31 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 32 H 0.08 -0.17 8.04 -2.39 -0.02 -0.19 16 33 H 0.07 0.07 8.04 -2.39 -0.02 0.05 16 34 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.07 0.48 7.57 -2.39 -0.02 0.46 16 37 H 0.41 -1.60 7.50 -92.71 -0.70 -2.30 16 38 H 0.15 1.43 7.01 -2.91 -0.02 1.41 16 39 H 0.09 -0.34 7.71 -2.38 -0.02 -0.36 16 40 H 0.40 -4.70 8.74 -74.06 -0.65 -5.34 16 41 H 0.19 -1.21 7.50 -2.91 -0.02 -1.23 16 42 H 0.21 -1.26 8.06 -2.91 -0.02 -1.28 16 43 H 0.24 -1.50 7.46 -2.91 -0.02 -1.52 16 44 H 0.09 -0.41 8.06 -2.39 -0.02 -0.43 16 45 H 0.10 -0.82 8.01 -2.39 -0.02 -0.84 16 Total: 0.00 -24.88 374.64 3.87 -21.01 By element: Atomic # 1 Polarization: -9.88 SS G_CDS: 0.42 Total: -9.47 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.31 Total: 16.87 kcal Atomic # 7 Polarization: -6.61 SS G_CDS: -3.67 Total: -10.28 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.97 Total: -11.00 kcal Atomic # 14 Polarization: -9.91 SS G_CDS: 2.79 Total: -7.13 kcal Total: -24.88 3.87 -21.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.416 kcal (2) G-P(sol) polarization free energy of solvation -24.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds