Wall clock time and date at job start Sun Mar 7 2021 13:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86304 * 111.24007 * 2 1 4 4 C 1.89337 * 111.45654 * 234.86291 * 2 1 3 5 5 C 1.55129 * 101.32469 * 239.10295 * 4 2 1 6 6 C 1.53576 * 111.29704 * 28.66332 * 5 4 2 7 7 N 1.46498 * 109.46744 * 190.88750 * 6 5 4 8 8 C 1.34775 * 120.00051 * 274.29294 * 7 6 5 9 9 O 1.21593 * 119.99878 * 0.02562 * 8 7 6 10 10 C 1.47582 * 120.00269 * 180.02562 * 8 7 6 11 11 C 1.40205 * 119.82993 * 0.02562 * 10 8 7 12 12 C 1.36230 * 120.37856 * 180.23575 * 11 10 8 13 13 C 1.39884 * 119.95941 * 359.49413 * 12 11 10 14 14 C 1.46249 * 133.84413 * 180.14441 * 13 12 11 15 15 C 1.50698 * 126.48210 * 0.29276 * 14 13 12 16 16 O 1.42901 * 109.47101 * 284.99347 * 15 14 13 17 17 Si 1.86306 * 109.47415 * 164.99765 * 15 14 13 18 18 H 1.48507 * 109.46591 * 299.99819 * 17 15 14 19 19 H 1.48501 * 109.46929 * 59.99457 * 17 15 14 20 20 H 1.48501 * 109.47224 * 179.97438 * 17 15 14 21 21 C 1.34451 * 107.03849 * 180.32058 * 14 13 12 22 22 N 1.36568 * 109.98330 * 0.02562 * 21 14 13 23 23 C 1.37827 * 109.85982 * 359.97438 * 22 21 14 24 24 C 1.38650 * 133.38031 * 179.97438 * 23 22 21 25 25 C 1.55914 * 109.46767 * 310.88592 * 6 5 4 26 26 H 1.08998 * 109.47205 * 294.92976 * 1 2 3 27 27 H 1.09000 * 109.47590 * 54.93399 * 1 2 3 28 28 H 1.09008 * 109.47410 * 174.93055 * 1 2 3 29 29 H 1.09004 * 109.46808 * 185.06784 * 3 2 1 30 30 H 1.09001 * 109.47244 * 305.06844 * 3 2 1 31 31 H 1.08999 * 109.46660 * 65.07002 * 3 2 1 32 32 H 1.08995 * 111.05415 * 357.16356 * 4 2 1 33 33 H 1.09009 * 111.04544 * 121.08808 * 4 2 1 34 34 H 1.08995 * 109.15827 * 268.15395 * 5 4 2 35 35 H 1.08997 * 109.07850 * 149.12125 * 5 4 2 36 36 H 1.09002 * 109.47467 * 70.88906 * 6 5 4 37 37 H 0.97002 * 120.00631 * 94.30285 * 7 6 5 38 38 H 1.08002 * 119.80800 * 359.95269 * 11 10 8 39 39 H 1.07996 * 120.01902 * 179.74879 * 12 11 10 40 40 H 1.09000 * 109.47455 * 44.99314 * 15 14 13 41 41 H 0.96699 * 114.00171 * 180.02562 * 16 15 14 42 42 H 1.08005 * 125.01233 * 180.02562 * 21 14 13 43 43 H 0.97001 * 125.06889 * 180.02562 * 22 21 14 44 44 H 1.08002 * 120.16375 * 0.05215 * 24 23 22 45 45 H 1.08999 * 111.42520 * 158.17838 * 25 6 5 46 46 H 1.08999 * 111.42761 * 283.06426 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5379 1.7365 0.0000 4 6 2.5555 -1.0142 -1.4410 5 6 3.3939 -2.0803 -0.6880 6 6 2.8147 -2.3628 0.7060 7 7 3.7665 -3.1672 1.4763 8 6 3.7633 -4.5099 1.3596 9 8 2.9709 -5.0535 0.6146 10 6 4.7217 -5.3203 2.1360 11 6 5.6335 -4.6898 2.9943 12 6 6.5262 -5.4267 3.7126 13 6 6.5289 -6.8213 3.6035 14 6 7.3257 -7.8838 4.2158 15 6 8.4407 -7.7058 5.2139 16 8 9.6065 -7.2214 4.5443 17 14 8.8216 -9.3426 6.0182 18 1 7.6100 -9.8459 6.7140 19 1 9.2378 -10.3193 4.9799 20 1 9.9207 -9.1672 7.0012 21 6 6.8758 -9.0495 3.7194 22 7 5.8570 -8.8199 2.8394 23 6 5.6172 -7.4660 2.7437 24 6 4.7159 -6.7079 2.0121 25 6 2.5568 -1.0141 1.4446 26 1 -0.3633 0.4332 0.9319 27 1 -0.3634 0.5904 -0.8411 28 1 -0.3634 -1.0237 -0.0908 29 1 3.6237 1.7042 -0.0908 30 1 2.1192 2.2891 -0.8411 31 1 2.2657 2.2320 0.9319 32 1 1.7532 -1.4790 -2.0140 33 1 3.1877 -0.4008 -2.0833 34 1 4.4178 -1.7217 -0.5834 35 1 3.3984 -3.0039 -1.2667 36 1 1.8760 -2.9076 0.6059 37 1 4.3988 -2.7336 2.0704 38 1 5.6312 -3.6135 3.0831 39 1 7.2287 -4.9347 4.3690 40 1 8.1352 -6.9888 5.9760 41 1 10.3660 -7.0836 5.1269 42 1 7.2630 -10.0240 3.9784 43 1 5.3737 -9.5072 2.3547 44 1 4.0124 -7.1908 1.3500 45 1 1.8203 -1.1301 2.2396 46 1 3.4837 -0.5846 1.8247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:25:24 Heat of formation + Delta-G solvation = -52.978960 kcal Electronic energy + Delta-G solvation = -25507.352171 eV Core-core repulsion = 21906.315105 eV Total energy + Delta-G solvation = -3601.037066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46638 -40.94392 -37.96865 -37.50786 -37.15323 -33.65609 -33.33824 -30.80445 -30.68750 -29.29009 -29.01251 -28.34895 -26.43635 -25.23687 -24.13052 -23.64555 -21.58556 -21.29182 -20.59865 -19.27749 -18.37012 -18.20057 -17.52964 -17.12915 -16.17703 -15.99563 -15.86668 -15.66945 -15.40113 -15.08911 -14.86961 -14.76956 -14.68415 -14.38605 -14.12937 -13.87107 -13.82715 -13.55385 -13.40994 -13.18824 -13.15056 -12.99695 -12.69288 -12.62926 -12.53141 -12.44446 -12.16374 -12.03965 -11.77778 -11.64211 -11.20584 -10.78264 -10.76091 -10.54734 -10.44769 -10.14851 -10.02989 -9.37781 -8.80757 -0.33610 0.37273 1.25342 1.33826 1.52567 1.60300 1.61372 1.88649 1.94559 1.97719 2.00450 2.05903 2.32169 2.66572 2.86601 3.58441 3.63650 3.75586 3.80838 3.89099 4.08637 4.11937 4.12655 4.27471 4.29909 4.37959 4.47176 4.51234 4.56005 4.61423 4.80009 4.82846 4.83173 4.89855 4.91572 4.97844 5.01326 5.11789 5.21064 5.24965 5.31130 5.40722 5.45531 5.49533 5.56300 5.60534 5.62517 5.69138 5.96967 6.48086 6.52132 6.95379 7.17283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.061 2.939 3 C -0.449 4.449 4 C -0.417 4.417 5 C -0.126 4.126 6 C 0.141 3.859 7 N -0.704 5.704 8 C 0.556 3.444 9 O -0.586 6.586 10 C -0.136 4.136 11 C -0.108 4.108 12 C -0.078 4.078 13 C -0.081 4.081 14 C -0.190 4.190 15 C -0.048 4.048 16 O -0.567 6.567 17 Si 0.983 3.017 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.255 1.255 21 C 0.075 3.925 22 N -0.579 5.579 23 C 0.066 3.934 24 C -0.070 4.070 25 C -0.413 4.413 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.415 0.585 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.394 0.606 42 H 0.198 0.802 43 H 0.433 0.567 44 H 0.126 0.874 45 H 0.090 0.910 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 2.759 4.894 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.501 4.501 5 C -0.165 4.165 6 C 0.037 3.963 7 N -0.355 5.355 8 C 0.345 3.655 9 O -0.468 6.468 10 C -0.140 4.140 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.086 4.086 14 C -0.197 4.197 15 C -0.158 4.158 16 O -0.375 6.375 17 Si 0.806 3.194 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.179 1.179 21 C -0.054 4.054 22 N -0.182 5.182 23 C -0.041 4.041 24 C -0.092 4.092 25 C -0.497 4.497 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.253 0.747 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.103 0.897 41 H 0.244 0.756 42 H 0.215 0.785 43 H 0.273 0.727 44 H 0.144 0.856 45 H 0.109 0.891 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.006 1.474 4.178 4.863 hybrid contribution 0.174 -0.335 -0.139 0.402 sum 2.179 1.139 4.039 4.729 Atomic orbital electron populations 1.26267 1.21585 1.04247 1.04897 0.79145 0.65446 0.65855 0.64315 1.26085 1.06931 1.17817 1.04926 1.26726 1.05192 1.06668 1.11533 1.22030 1.00721 0.98958 0.94744 1.21717 0.91886 0.92038 0.90656 1.46018 1.38358 1.05107 1.46060 1.18486 0.82819 0.83141 0.81039 1.90750 1.42014 1.72926 1.41097 1.19528 0.99820 0.92879 1.01780 1.20938 0.94749 1.00995 0.96084 1.20446 0.98596 0.91112 0.99456 1.19555 0.96626 0.94287 0.98147 1.19918 1.01926 0.91441 1.06449 1.24108 0.85212 1.10121 0.96354 1.86505 1.22500 1.88819 1.39695 0.85270 0.80499 0.75375 0.78301 1.18393 1.18570 1.17884 1.22176 0.90631 1.00251 0.92366 1.41747 1.31963 1.05600 1.38936 1.18158 0.99908 0.84628 1.01375 1.20107 0.97677 0.92601 0.98786 1.27285 1.08351 1.02279 1.11786 0.90585 0.90899 0.91898 0.90659 0.91030 0.90480 0.91292 0.89587 0.90810 0.94640 0.91300 0.74681 0.82707 0.83411 0.89706 0.75566 0.78519 0.72670 0.85614 0.89149 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.44 8.65 113.37 0.98 2.42 16 2 Si 1.06 -6.66 13.36 68.60 0.92 -5.74 16 3 C -0.45 2.70 8.65 113.37 0.98 3.68 16 4 C -0.42 0.29 5.85 72.71 0.43 0.71 16 5 C -0.13 -0.40 5.65 31.52 0.18 -0.22 16 6 C 0.14 0.34 2.46 46.19 0.11 0.45 16 7 N -0.70 -2.02 5.03 -439.96 -2.21 -4.23 16 8 C 0.56 5.52 7.73 86.71 0.67 6.19 16 9 O -0.59 -10.62 15.96 -4.01 -0.06 -10.68 16 10 C -0.14 -1.00 5.87 -20.07 -0.12 -1.12 16 11 C -0.11 -0.21 9.46 22.28 0.21 0.00 16 12 C -0.08 -0.24 10.03 22.20 0.22 -0.01 16 13 C -0.08 -0.50 6.35 -20.14 -0.13 -0.63 16 14 C -0.19 -0.63 5.60 -18.65 -0.10 -0.73 16 15 C -0.05 0.07 3.05 71.24 0.22 0.28 16 16 O -0.57 0.01 12.86 -148.98 -1.92 -1.91 16 17 Si 0.98 -3.47 26.08 68.60 1.79 -1.68 16 18 H -0.26 0.51 7.11 99.48 0.71 1.22 16 19 H -0.26 0.45 7.03 99.48 0.70 1.15 16 20 H -0.26 0.83 7.11 99.48 0.71 1.54 16 21 C 0.07 0.04 10.43 83.09 0.87 0.90 16 22 N -0.58 -0.73 6.07 -187.70 -1.14 -1.87 16 23 C 0.07 0.43 7.26 38.96 0.28 0.71 16 24 C -0.07 -0.60 9.61 22.63 0.22 -0.38 16 25 C -0.41 1.95 5.47 72.99 0.40 2.35 16 26 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H 0.06 -0.06 7.96 -2.38 -0.02 -0.08 16 29 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.08 -0.51 7.96 -2.39 -0.02 -0.52 16 32 H 0.07 0.08 8.04 -2.39 -0.02 0.06 16 33 H 0.09 -0.17 8.04 -2.38 -0.02 -0.19 16 34 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.07 0.48 7.55 -2.39 -0.02 0.47 16 37 H 0.41 -1.49 6.58 -92.71 -0.61 -2.10 16 38 H 0.16 -0.80 6.36 -2.91 -0.02 -0.82 16 39 H 0.15 -0.20 8.06 -2.91 -0.02 -0.22 16 40 H 0.09 -0.38 7.96 -2.39 -0.02 -0.40 16 41 H 0.39 -3.65 8.74 -74.06 -0.65 -4.29 16 42 H 0.20 -1.12 6.29 -2.91 -0.02 -1.14 16 43 H 0.43 -1.93 8.96 -92.71 -0.83 -2.76 16 44 H 0.13 1.17 7.62 -2.91 -0.02 1.14 16 45 H 0.09 -0.45 8.06 -2.39 -0.02 -0.47 16 46 H 0.10 -0.85 8.01 -2.39 -0.02 -0.87 16 Total: 0.00 -23.32 377.08 2.47 -20.85 By element: Atomic # 1 Polarization: -9.03 SS G_CDS: -0.32 Total: -9.36 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.42 Total: 14.62 kcal Atomic # 7 Polarization: -2.75 SS G_CDS: -3.35 Total: -6.11 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.98 Total: -12.59 kcal Atomic # 14 Polarization: -10.12 SS G_CDS: 2.71 Total: -7.42 kcal Total: -23.32 2.47 -20.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.125 kcal (2) G-P(sol) polarization free energy of solvation -23.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds