Wall clock time and date at job start Sun Mar 7 2021 13:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38507 * 119.84928 * 2 1 4 4 C 1.38092 * 120.38964 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.95683 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47500 * 104.99919 * 5 4 3 7 7 Si 1.86301 * 109.47145 * 344.99674 * 5 4 3 8 8 H 1.48500 * 109.46922 * 299.99949 * 7 5 4 9 9 H 1.48500 * 109.47072 * 60.00349 * 7 5 4 10 10 H 1.48501 * 109.46908 * 180.02562 * 7 5 4 11 11 C 1.38666 * 120.08448 * 359.74145 * 4 3 2 12 12 O 1.35657 * 120.14854 * 180.25209 * 11 4 3 13 13 C 1.40175 * 119.69984 * 0.53777 * 11 4 3 14 14 C 1.47536 * 120.19202 * 179.74123 * 13 11 4 15 15 O 1.21590 * 120.00085 * 359.72216 * 14 13 11 16 16 N 1.34781 * 119.99998 * 179.72096 * 14 13 11 17 17 C 1.46501 * 119.99771 * 180.02562 * 16 14 13 18 18 C 1.53566 * 109.12202 * 276.80162 * 17 16 14 19 19 C 1.56066 * 109.55501 * 190.52483 * 18 17 16 20 20 Si 1.89657 * 99.28026 * 40.54612 * 19 18 17 21 21 C 1.86301 * 111.45806 * 221.68943 * 20 19 18 22 22 C 1.86297 * 111.46075 * 96.74249 * 20 19 18 23 23 C 1.55147 * 109.12320 * 155.00156 * 17 16 14 24 24 C 1.37824 * 119.84975 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.46778 * 269.97333 * 1 2 3 26 26 H 1.08997 * 109.47340 * 29.96942 * 1 2 3 27 27 H 1.08995 * 109.47349 * 149.97619 * 1 2 3 28 28 H 1.08002 * 119.80239 * 0.03424 * 3 2 1 29 29 H 1.09007 * 109.47126 * 225.00013 * 5 4 3 30 30 H 0.96702 * 113.99768 * 180.02562 * 6 5 4 31 31 H 0.96698 * 114.00266 * 270.28160 * 12 11 4 32 32 H 0.96991 * 119.99765 * 0.02562 * 16 14 13 33 33 H 1.08996 * 109.10714 * 35.85242 * 17 16 14 34 34 H 1.09006 * 109.47935 * 310.50600 * 18 17 16 35 35 H 1.09003 * 109.47773 * 70.45591 * 18 17 16 36 36 H 1.08996 * 111.41269 * 283.05303 * 19 18 17 37 37 H 1.09006 * 111.49251 * 158.06559 * 19 18 17 38 38 H 1.09002 * 109.47148 * 294.93084 * 21 20 19 39 39 H 1.09001 * 109.46900 * 174.93236 * 21 20 19 40 40 H 1.09004 * 109.47198 * 54.93214 * 21 20 19 41 41 H 1.08995 * 109.47233 * 185.06503 * 22 20 19 42 42 H 1.08997 * 109.47080 * 305.06849 * 22 20 19 43 43 H 1.08998 * 109.47258 * 65.06460 * 22 20 19 44 44 H 1.09002 * 111.04815 * 31.04878 * 23 17 16 45 45 H 1.09002 * 111.08226 * 267.09990 * 23 17 16 46 46 H 1.08000 * 120.04705 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2144 -0.0005 5 6 4.3174 2.5270 -0.0011 6 8 4.8556 2.7711 1.3000 7 14 3.1444 3.9012 -0.4557 8 1 2.5852 3.6476 -1.8078 9 1 2.0393 3.9565 0.5347 10 1 3.8740 5.1946 -0.4568 11 6 4.2836 0.0211 0.0043 12 8 5.6402 0.0324 0.0090 13 6 3.5897 -1.1968 -0.0016 14 6 4.3304 -2.4728 -0.0023 15 8 5.5463 -2.4699 -0.0028 16 7 3.6592 -3.6416 -0.0023 17 6 4.3947 -4.9086 -0.0024 18 6 4.7959 -5.2573 -1.4432 19 6 5.3390 -6.7195 -1.4948 20 14 4.1017 -7.5470 -0.3196 21 6 4.9470 -8.7545 0.8198 22 6 2.7125 -8.3617 -1.2560 23 6 3.5010 -6.0152 0.6170 24 6 2.1930 -1.1954 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6507 2.1334 0.0006 29 1 5.1286 2.4865 -0.7281 30 1 5.3460 3.6013 1.3734 31 1 6.0365 0.0382 -0.8730 32 1 2.6893 -3.6438 -0.0023 33 1 5.2958 -4.7981 0.6008 34 1 3.9256 -5.1709 -2.0938 35 1 5.5709 -4.5694 -1.7813 36 1 6.3565 -6.7799 -1.1087 37 1 5.2721 -7.1350 -2.5004 38 1 5.3578 -9.5783 0.2361 39 1 4.2249 -9.1428 1.5381 40 1 5.7529 -8.2489 1.3520 41 1 1.9763 -8.7476 -0.5509 42 1 2.2392 -7.6313 -1.9122 43 1 3.1091 -9.1830 -1.8528 44 1 2.4465 -5.8235 0.4184 45 1 3.6840 -6.1138 1.6870 46 1 1.6513 -2.1297 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17626288_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:25:53 Heat of formation + Delta-G solvation = -131.629297 kcal Electronic energy + Delta-G solvation = -25563.163916 eV Core-core repulsion = 21961.912316 eV Total energy + Delta-G solvation = -3601.251600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62570 -40.01697 -37.97849 -37.60631 -36.92035 -33.90411 -33.13831 -32.28088 -29.51000 -29.23343 -28.55538 -27.62023 -26.74681 -25.45914 -24.22213 -21.86670 -21.45174 -21.14330 -19.43469 -18.49350 -18.18453 -17.66696 -16.68276 -16.62980 -16.05146 -15.85355 -15.72857 -15.43269 -14.97756 -14.87383 -14.60881 -14.49629 -14.34717 -14.02021 -13.98220 -13.86565 -13.81766 -13.49658 -13.34531 -13.16968 -13.02477 -12.93200 -12.80016 -12.71824 -12.45135 -12.37824 -12.15837 -11.81630 -11.75674 -11.55624 -10.95852 -10.88062 -10.55203 -10.42186 -10.27762 -10.09845 -9.87462 -9.46592 -0.26414 0.10956 1.06696 1.37340 1.42259 1.46316 1.77429 1.81627 1.82503 1.87027 2.23645 2.53801 2.65943 3.20650 3.35202 3.61524 3.64287 3.82597 3.88012 4.04794 4.11620 4.16729 4.29690 4.33945 4.38049 4.44901 4.52215 4.58189 4.62209 4.63183 4.64912 4.68931 4.70384 4.75133 4.96072 4.98195 4.99330 5.03459 5.21177 5.26493 5.32318 5.35611 5.38190 5.41278 5.47510 5.60734 5.65322 6.59416 6.62161 6.82692 7.36215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.083 4.083 4 C -0.109 4.109 5 C -0.073 4.073 6 O -0.537 6.537 7 Si 0.944 3.056 8 H -0.247 1.247 9 H -0.247 1.247 10 H -0.253 1.253 11 C 0.192 3.808 12 O -0.466 6.466 13 C -0.164 4.164 14 C 0.558 3.442 15 O -0.518 6.518 16 N -0.722 5.722 17 C 0.151 3.849 18 C -0.129 4.129 19 C -0.395 4.395 20 Si 0.976 3.024 21 C -0.444 4.444 22 C -0.441 4.441 23 C -0.411 4.411 24 C -0.068 4.068 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.379 0.621 31 H 0.392 0.608 32 H 0.397 0.603 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -0.705 -2.753 5.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.098 4.098 3 C -0.101 4.101 4 C -0.110 4.110 5 C -0.183 4.183 6 O -0.343 6.343 7 Si 0.766 3.234 8 H -0.171 1.171 9 H -0.170 1.170 10 H -0.177 1.177 11 C 0.145 3.855 12 O -0.277 6.277 13 C -0.168 4.168 14 C 0.345 3.655 15 O -0.395 6.395 16 N -0.375 5.375 17 C 0.047 3.953 18 C -0.167 4.167 19 C -0.482 4.482 20 Si 1.173 2.827 21 C -0.552 4.552 22 C -0.550 4.550 23 C -0.496 4.496 24 C -0.086 4.086 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.092 0.908 30 H 0.226 0.774 31 H 0.250 0.750 32 H 0.233 0.767 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.637 -0.658 -2.234 5.189 hybrid contribution 0.150 0.353 -0.420 0.568 sum -4.487 -0.305 -2.654 5.222 Atomic orbital electron populations 1.20831 0.90044 1.03396 1.03017 1.19755 0.96737 0.92217 1.01046 1.21089 0.92907 0.98544 0.97518 1.19629 0.93328 0.93789 1.04274 1.24575 1.03302 1.00962 0.89470 1.86572 1.74348 1.45057 1.28273 0.85817 0.79453 0.77237 0.80900 1.17085 1.17024 1.17689 1.18193 0.83873 0.89641 0.93770 1.84809 1.14070 1.95881 1.32891 1.20415 0.93946 0.93594 1.08851 1.18060 0.87372 0.83420 0.76687 1.90824 1.12964 1.87297 1.48379 1.46159 1.10088 1.05435 1.75827 1.21433 0.95569 0.81890 0.96379 1.22266 1.01298 0.97129 0.96036 1.26625 1.09187 1.02071 1.10303 0.80389 0.67981 0.66858 0.67475 1.26026 1.07806 1.11079 1.10303 1.26005 1.12997 1.07538 1.08429 1.26993 1.02949 1.12456 1.07247 1.21120 0.92194 0.98213 0.97104 0.90572 0.91095 0.90987 0.85104 0.90801 0.77359 0.74961 0.76736 0.89344 0.91624 0.90983 0.90094 0.90117 0.90967 0.91144 0.90904 0.91070 0.91068 0.90963 0.89777 0.89577 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.27 10.00 36.01 0.36 0.63 16 2 C -0.10 -0.01 5.87 -104.67 -0.61 -0.62 16 3 C -0.08 -0.09 8.30 -39.54 -0.33 -0.42 16 4 C -0.11 -0.25 5.30 -104.52 -0.55 -0.80 16 5 C -0.07 -0.04 2.36 36.00 0.09 0.05 16 6 O -0.54 -0.99 12.86 -35.23 -0.45 -1.44 16 7 Si 0.94 -0.63 25.49 -169.99 -4.33 -4.96 16 8 H -0.25 0.09 7.11 56.52 0.40 0.49 16 9 H -0.25 -0.06 6.73 56.52 0.38 0.32 16 10 H -0.25 0.12 7.11 56.52 0.40 0.52 16 11 C 0.19 0.69 6.69 -38.70 -0.26 0.43 16 12 O -0.47 -1.96 10.91 -40.54 -0.44 -2.40 16 13 C -0.16 -0.46 5.89 -104.84 -0.62 -1.08 16 14 C 0.56 2.17 7.70 -12.47 -0.10 2.07 16 15 O -0.52 -3.79 14.83 -16.59 -0.25 -4.04 16 16 N -0.72 -0.61 5.02 -53.46 -0.27 -0.88 16 17 C 0.15 0.09 2.62 -66.50 -0.17 -0.08 16 18 C -0.13 -0.05 5.49 -24.80 -0.14 -0.19 16 19 C -0.40 0.41 5.96 38.80 0.23 0.65 16 20 Si 0.98 -2.95 13.35 -169.99 -2.27 -5.22 16 21 C -0.44 0.79 8.65 101.05 0.87 1.67 16 22 C -0.44 1.05 8.65 101.05 0.87 1.93 16 23 C -0.41 0.79 5.45 38.29 0.21 1.00 16 24 C -0.07 -0.01 9.18 -39.20 -0.36 -0.37 16 25 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 26 H 0.07 -0.20 8.08 -51.93 -0.42 -0.62 16 27 H 0.07 -0.25 8.08 -51.93 -0.42 -0.67 16 28 H 0.13 -0.05 4.86 -52.49 -0.26 -0.31 16 29 H 0.07 -0.09 7.83 -51.92 -0.41 -0.49 16 30 H 0.38 -1.05 8.74 45.56 0.40 -0.65 16 31 H 0.39 0.10 9.06 45.56 0.41 0.51 16 32 H 0.40 -0.73 6.42 -40.82 -0.26 -1.00 16 33 H 0.09 0.24 7.58 -51.93 -0.39 -0.16 16 34 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 -0.04 8.06 -51.93 -0.42 -0.46 16 37 H 0.08 -0.11 8.06 -51.93 -0.42 -0.53 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 42 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 43 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 44 H 0.08 -0.25 7.73 -51.93 -0.40 -0.66 16 45 H 0.09 -0.15 8.04 -51.93 -0.42 -0.56 16 46 H 0.13 -0.36 6.40 -52.49 -0.34 -0.69 16 LS Contribution 372.67 15.07 5.62 5.62 Total: 0.00 -9.25 372.67 -8.80 -18.06 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: -5.90 Total: -9.59 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.50 Total: 4.86 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: -0.27 Total: -0.88 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -1.14 Total: -7.88 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: -6.60 Total: -10.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -9.25 -8.80 -18.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.570 kcal (2) G-P(sol) polarization free energy of solvation -9.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds