Wall clock time and date at job start Sun Mar 7 2021 13:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89657 * 111.45806 * 234.93108 * 2 1 3 5 5 C 1.56066 * 99.28026 * 221.68943 * 4 2 1 6 6 C 1.53566 * 109.55501 * 40.54612 * 5 4 2 7 7 N 1.46501 * 109.12202 * 190.52483 * 6 5 4 8 8 C 1.34781 * 119.99771 * 276.80162 * 7 6 5 9 9 O 1.21657 * 120.00149 * 0.02562 * 8 7 6 10 10 C 1.47046 * 119.99868 * 180.02562 * 8 7 6 11 11 C 1.36230 * 123.49029 * 179.70475 * 10 8 7 12 12 Cl 1.73604 * 124.60428 * 0.03306 * 11 10 8 13 13 S 1.70439 * 110.78857 * 179.91167 * 11 10 8 14 14 C 1.75496 * 92.46852 * 0.30047 * 13 11 10 15 15 C 1.50698 * 124.68914 * 179.83272 * 14 13 11 16 16 O 1.42902 * 109.46763 * 244.99871 * 15 14 13 17 17 Si 1.86299 * 109.47077 * 4.99291 * 15 14 13 18 18 H 1.48503 * 109.46674 * 60.00327 * 17 15 14 19 19 H 1.48497 * 109.47037 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47273 * 300.00555 * 17 15 14 21 21 C 1.32693 * 110.62620 * 359.82796 * 14 13 11 22 22 C 1.55147 * 111.29010 * 311.00476 * 6 5 4 23 23 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 24 24 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 25 25 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 27 27 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 29 29 H 1.08996 * 111.42463 * 339.17352 * 4 2 1 30 30 H 1.09006 * 111.42054 * 104.11574 * 4 2 1 31 31 H 1.09006 * 109.40987 * 280.52247 * 5 4 2 32 32 H 1.09003 * 109.48226 * 160.61227 * 5 4 2 33 33 H 1.08996 * 109.04358 * 71.43449 * 6 5 4 34 34 H 0.96991 * 120.00464 * 96.80403 * 7 6 5 35 35 H 1.08997 * 109.47753 * 125.00018 * 15 14 13 36 36 H 0.96699 * 114.00481 * 59.99978 * 16 15 14 37 37 H 1.08004 * 123.45121 * 179.97438 * 21 14 13 38 38 H 1.09002 * 111.04815 * 270.56954 * 22 6 5 39 39 H 1.09002 * 111.08226 * 146.62066 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0142 -1.4447 5 6 3.7193 -1.7454 -0.7034 6 6 3.2462 -2.1811 0.6911 7 7 4.4010 -2.6360 1.4693 8 6 4.8540 -3.8976 1.3281 9 8 4.3042 -4.6583 0.5541 10 6 6.0128 -4.3544 2.1096 11 6 6.5257 -5.6138 2.0274 12 17 5.9030 -6.8667 0.9996 13 16 7.8637 -5.7912 3.0681 14 6 7.7340 -4.1374 3.6407 15 6 8.6459 -3.5097 4.6630 16 8 7.8968 -3.1905 5.8374 17 14 10.0056 -4.7060 5.1000 18 1 10.7841 -5.0377 3.8796 19 1 10.9039 -4.0877 6.1079 20 1 9.4123 -5.9464 5.6610 21 6 6.7219 -3.5159 3.0489 22 6 2.5556 -1.0124 1.4422 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.1907 2.2612 0.8899 27 1 3.6274 1.7027 -0.0005 28 1 2.1908 2.2612 -0.8900 29 1 1.8198 -1.7216 -1.8246 30 1 2.9328 -0.3696 -2.2393 31 1 4.5681 -1.0687 -0.6043 32 1 4.0203 -2.6229 -1.2757 33 1 2.5401 -3.0047 0.5858 34 1 4.8396 -2.0295 2.0861 35 1 9.0814 -2.5992 4.2513 36 1 7.4800 -3.9550 6.2580 37 1 6.4551 -2.4886 3.2490 38 1 3.2797 -0.4330 2.0151 39 1 1.7543 -1.3781 2.0843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:34:08 Heat of formation + Delta-G solvation = -83.054570 kcal Electronic energy + Delta-G solvation = -21830.359600 eV Core-core repulsion = 18434.786623 eV Total energy + Delta-G solvation = -3395.572977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 333.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15087 -39.00921 -38.07996 -37.26497 -36.89710 -33.46274 -31.64940 -29.55818 -29.05788 -28.34145 -26.91761 -26.01852 -24.28886 -22.26659 -21.31139 -20.81070 -19.43631 -18.07059 -17.82119 -17.09196 -16.46817 -16.07117 -16.00302 -15.86642 -15.59575 -14.85953 -14.67328 -14.65044 -14.22593 -14.19324 -13.81631 -13.79859 -13.66297 -13.31670 -13.13769 -13.01488 -12.86022 -12.70828 -12.63611 -12.46310 -12.43026 -12.25402 -12.14048 -11.77366 -11.73700 -11.02845 -10.75334 -10.57791 -10.50418 -10.37401 -10.10650 -9.91947 -9.68981 -0.67448 -0.26053 0.42041 0.71149 0.98960 1.07914 1.39455 1.47862 1.64042 1.90035 1.96989 2.06467 2.16831 2.28129 2.66503 3.28909 3.60776 3.79610 3.84733 3.94657 4.15130 4.29337 4.39318 4.46216 4.57350 4.60011 4.77265 4.84423 4.85586 4.89269 4.91167 4.95286 5.03883 5.06142 5.23978 5.33203 5.47557 5.55802 5.63361 5.69408 6.50111 6.63378 7.17158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.061 2.939 3 C -0.450 4.450 4 C -0.418 4.418 5 C -0.128 4.128 6 C 0.149 3.851 7 N -0.703 5.703 8 C 0.565 3.435 9 O -0.563 6.563 10 C -0.165 4.165 11 C -0.136 4.136 12 Cl 0.002 6.998 13 S 0.229 5.771 14 C -0.224 4.224 15 C -0.026 4.026 16 O -0.540 6.540 17 Si 0.898 3.102 18 H -0.241 1.241 19 H -0.234 1.234 20 H -0.234 1.234 21 C -0.064 4.064 22 C -0.414 4.414 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.151 0.849 36 H 0.392 0.608 37 H 0.187 0.813 38 H 0.105 0.895 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 5.792 4.316 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.253 2.747 3 C -0.559 4.559 4 C -0.502 4.502 5 C -0.167 4.167 6 C 0.045 3.955 7 N -0.355 5.355 8 C 0.351 3.649 9 O -0.443 6.443 10 C -0.185 4.185 11 C -0.283 4.283 12 Cl 0.031 6.969 13 S 0.494 5.506 14 C -0.341 4.341 15 C -0.140 4.140 16 O -0.347 6.347 17 Si 0.719 3.281 18 H -0.164 1.164 19 H -0.156 1.156 20 H -0.157 1.157 21 C -0.093 4.093 22 C -0.498 4.498 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.252 0.748 35 H 0.168 0.832 36 H 0.241 0.759 37 H 0.204 0.796 38 H 0.123 0.877 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.379 3.963 4.078 6.614 hybrid contribution -1.379 0.226 -0.640 1.537 sum 2.000 4.189 3.438 5.777 Atomic orbital electron populations 1.26242 1.21422 1.04405 1.04801 0.79151 0.65387 0.65912 0.64257 1.26100 1.06929 1.17901 1.04928 1.26931 1.03235 1.08515 1.11506 1.22243 0.99599 1.00107 0.94728 1.21488 0.86435 0.97319 0.90279 1.46035 1.32931 1.11950 1.44592 1.17777 0.82838 0.82733 0.81577 1.90849 1.59271 1.55427 1.38724 1.20456 1.00908 0.93340 1.03753 1.25632 1.04077 0.95160 1.03455 1.98422 1.85783 1.48240 1.64488 1.83388 1.23356 1.11047 1.32764 1.25004 1.04883 0.96977 1.07278 1.24339 0.97677 1.07707 0.84246 1.86533 1.70307 1.38637 1.39195 0.86184 0.79661 0.79037 0.83201 1.16396 1.15619 1.15735 1.21185 0.93526 1.01369 0.93176 1.27115 1.06178 1.04519 1.12021 0.91033 0.90631 0.91611 0.90441 0.90727 0.91057 0.91243 0.89838 0.90371 0.94343 0.91828 0.74796 0.83193 0.75862 0.79604 0.87668 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.00 8.65 113.37 0.98 2.98 16 2 Si 1.06 -7.62 13.35 68.60 0.92 -6.71 16 3 C -0.45 3.03 8.65 113.37 0.98 4.01 16 4 C -0.42 0.52 5.96 73.05 0.44 0.96 16 5 C -0.13 -0.26 5.49 31.85 0.17 -0.08 16 6 C 0.15 0.17 2.62 45.92 0.12 0.29 16 7 N -0.70 -0.63 5.05 -441.75 -2.23 -2.86 16 8 C 0.56 4.45 7.72 86.55 0.67 5.12 16 9 O -0.56 -9.04 14.58 -4.21 -0.06 -9.10 16 10 C -0.16 -0.70 5.98 -19.84 -0.12 -0.82 16 11 C -0.14 -0.82 6.87 67.35 0.46 -0.35 16 12 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.06 16 13 S 0.23 0.03 20.19 -56.49 -1.14 -1.11 16 14 C -0.22 0.81 5.65 24.51 0.14 0.95 16 15 C -0.03 0.18 2.94 71.24 0.21 0.39 16 16 O -0.54 3.22 12.88 -148.98 -1.92 1.31 16 17 Si 0.90 -4.37 26.20 68.60 1.80 -2.58 16 18 H -0.24 0.75 7.11 99.48 0.71 1.45 16 19 H -0.23 0.62 7.11 99.48 0.71 1.32 16 20 H -0.23 1.00 7.11 99.48 0.71 1.70 16 21 C -0.06 0.19 9.75 22.70 0.22 0.41 16 22 C -0.41 2.34 5.45 72.72 0.40 2.73 16 23 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 24 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 25 H 0.06 -0.18 7.96 -2.38 -0.02 -0.20 16 26 H 0.08 -0.57 7.96 -2.39 -0.02 -0.59 16 27 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 28 H 0.07 -0.43 7.96 -2.39 -0.02 -0.44 16 29 H 0.07 0.06 8.06 -2.39 -0.02 0.04 16 30 H 0.08 -0.17 8.06 -2.38 -0.02 -0.19 16 31 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.41 7.58 -2.39 -0.02 0.39 16 34 H 0.41 -2.44 6.93 -92.71 -0.64 -3.09 16 35 H 0.15 -1.54 7.96 -2.39 -0.02 -1.56 16 36 H 0.39 -4.49 8.70 -74.06 -0.64 -5.13 16 37 H 0.19 -1.68 7.10 -2.91 -0.02 -1.70 16 38 H 0.10 -0.98 7.73 -2.39 -0.02 -0.99 16 39 H 0.09 -0.49 8.04 -2.39 -0.02 -0.51 16 Total: 0.00 -17.54 350.73 2.51 -15.03 By element: Atomic # 1 Polarization: -11.05 SS G_CDS: 0.55 Total: -10.50 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 4.67 Total: 16.58 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -2.23 Total: -2.86 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.98 Total: -7.80 kcal Atomic # 14 Polarization: -12.00 SS G_CDS: 2.71 Total: -9.28 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.14 Total: -1.11 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.06 kcal Total: -17.54 2.51 -15.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.021 kcal (2) G-P(sol) polarization free energy of solvation -17.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds