Wall clock time and date at job start Sun Mar 7 2021 13:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 N 1.46498 * 109.47533 * 190.93919 * 6 5 4 8 8 C 1.34777 * 119.99698 * 273.54425 * 7 6 5 9 9 O 1.21278 * 120.00529 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99832 * 179.97438 * 8 7 6 11 11 O 1.42900 * 109.47149 * 179.97438 * 10 8 7 12 12 C 1.35901 * 117.00216 * 180.02562 * 11 10 8 13 13 C 1.38734 * 120.05513 * 359.72955 * 12 11 10 14 14 C 1.38137 * 119.94382 * 179.74628 * 13 12 11 15 15 C 1.38265 * 120.06009 * 0.50301 * 14 13 12 16 16 C 1.50694 * 119.94805 * 179.74608 * 15 14 13 17 17 O 1.42898 * 109.47301 * 245.02186 * 16 15 14 18 18 Si 1.86302 * 109.47350 * 5.02582 * 16 15 14 19 19 H 1.48493 * 109.47229 * 179.97438 * 18 16 15 20 20 H 1.48499 * 109.46688 * 300.00132 * 18 16 15 21 21 H 1.48506 * 109.46944 * 59.99654 * 18 16 15 22 22 C 1.38264 * 120.10688 * 359.77365 * 15 14 13 23 23 C 1.38151 * 120.05647 * 359.97422 * 22 15 14 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.09002 * 111.04813 * 356.07768 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09006 * 109.47935 * 70.98593 * 6 5 4 36 36 H 0.96995 * 120.00518 * 93.54592 * 7 6 5 37 37 H 1.09000 * 109.47109 * 300.00524 * 10 8 7 38 38 H 1.09001 * 109.46929 * 60.00250 * 10 8 7 39 39 H 1.08004 * 120.02645 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.97339 * 180.23321 * 14 13 12 41 41 H 1.09006 * 109.46714 * 125.02467 * 16 15 14 42 42 H 0.96698 * 114.00041 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.97352 * 179.97438 * 22 15 14 44 44 H 1.08006 * 120.02301 * 179.97438 * 23 22 15 45 45 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 46 46 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 7 4.1238 -2.9248 -1.4726 8 6 5.3807 -3.3997 -1.3669 9 8 6.1768 -2.8510 -0.6349 10 6 5.7965 -4.6134 -2.1577 11 8 7.1643 -4.9184 -1.8781 12 6 7.6997 -5.9926 -2.5154 13 6 6.9229 -6.7412 -3.3877 14 6 7.4709 -7.8296 -4.0383 15 6 8.7895 -8.1794 -3.8130 16 6 9.3831 -9.3706 -4.5197 17 8 9.7189 -10.3751 -3.5604 18 14 8.1431 -10.0567 -5.7291 19 1 8.7283 -11.2301 -6.4260 20 1 6.9187 -10.4735 -4.9996 21 1 7.7942 -9.0128 -6.7260 22 6 9.5641 -7.4384 -2.9397 23 6 9.0222 -6.3459 -2.2906 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3781 2.0843 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5681 -1.0687 -0.6043 36 1 3.4870 -3.3640 -2.0578 37 1 5.1704 -5.4609 -1.8787 38 1 5.6802 -4.4106 -3.2224 39 1 5.8916 -6.4711 -3.5607 40 1 6.8677 -8.4105 -4.7204 41 1 10.2819 -9.0646 -5.0552 42 1 10.1067 -11.1728 -3.9455 43 1 10.5937 -7.7138 -2.7650 44 1 9.6277 -5.7677 -1.6082 45 1 1.8198 -1.7216 -1.8246 46 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17626288_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:35:11 Heat of formation + Delta-G solvation = -121.966385 kcal Electronic energy + Delta-G solvation = -24312.118238 eV Core-core repulsion = 20711.285653 eV Total energy + Delta-G solvation = -3600.832585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48412 -40.55295 -38.94530 -37.33800 -36.98701 -33.70571 -32.36749 -31.78027 -30.20073 -29.33479 -28.81366 -28.57045 -26.16234 -24.79238 -23.94669 -22.34717 -21.65009 -21.32904 -19.46906 -18.51372 -18.23234 -17.45434 -17.34672 -16.86238 -16.71630 -15.96992 -15.75141 -15.63828 -15.37126 -15.05685 -14.54195 -14.42368 -14.39733 -14.09212 -14.05527 -14.01801 -13.76222 -13.60498 -13.53846 -13.37804 -13.35055 -13.06480 -12.77979 -12.56848 -12.45224 -12.21550 -12.09982 -11.83194 -11.70043 -11.67440 -11.04696 -10.97686 -10.63529 -10.55662 -10.33477 -10.03743 -9.98098 -9.15210 0.33842 0.35875 1.12855 1.31921 1.40758 1.46792 1.53193 1.64207 1.74861 1.80030 1.87409 2.38973 2.66894 2.69843 3.42733 3.51940 3.72236 3.80341 3.84732 3.88192 3.90622 3.97862 4.06923 4.26276 4.29014 4.38833 4.40674 4.46003 4.51460 4.61509 4.63370 4.66242 4.67741 4.69296 4.89231 4.97189 4.99320 5.20444 5.20584 5.25591 5.29919 5.31805 5.37210 5.45535 5.49967 5.56504 5.72914 6.28880 6.44415 6.58431 7.15930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.979 3.021 3 C -0.445 4.445 4 C -0.397 4.397 5 C -0.128 4.128 6 C 0.148 3.852 7 N -0.719 5.719 8 C 0.514 3.486 9 O -0.513 6.513 10 C 0.039 3.961 11 O -0.288 6.288 12 C 0.134 3.866 13 C -0.205 4.205 14 C -0.082 4.082 15 C -0.113 4.113 16 C -0.077 4.077 17 O -0.545 6.545 18 Si 0.945 3.055 19 H -0.257 1.257 20 H -0.249 1.249 21 H -0.250 1.250 22 C -0.048 4.048 23 C -0.145 4.145 24 C -0.410 4.410 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.379 0.621 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.086 0.914 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -0.525 -3.685 5.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.176 2.824 3 C -0.553 4.553 4 C -0.484 4.484 5 C -0.166 4.166 6 C 0.044 3.956 7 N -0.373 5.373 8 C 0.298 3.702 9 O -0.387 6.387 10 C -0.040 4.040 11 O -0.200 6.200 12 C 0.088 3.912 13 C -0.224 4.224 14 C -0.100 4.100 15 C -0.113 4.113 16 C -0.187 4.187 17 O -0.351 6.351 18 Si 0.768 3.232 19 H -0.181 1.181 20 H -0.172 1.172 21 H -0.174 1.174 22 C -0.066 4.066 23 C -0.164 4.164 24 C -0.495 4.495 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.227 0.773 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.333 0.164 -3.190 5.383 hybrid contribution 0.079 -0.723 -0.548 0.911 sum -4.254 -0.559 -3.739 5.691 Atomic orbital electron populations 1.26008 1.19712 1.04651 1.04650 0.80346 0.67472 0.67470 0.67110 1.26036 1.06831 1.17789 1.04660 1.26442 1.05623 1.06094 1.10198 1.22049 1.01021 0.98809 0.94758 1.21696 0.97655 0.86074 0.90152 1.45986 1.12001 1.31782 1.47540 1.20085 0.82546 0.84922 0.82648 1.90777 1.51335 1.58620 1.37987 1.22499 0.83450 0.97420 1.00636 1.86173 1.25345 1.44253 1.64226 1.19064 0.93138 0.86842 0.92142 1.21119 1.00569 0.98990 1.01721 1.20760 0.94135 0.96448 0.98621 1.19164 0.94065 0.97063 1.01046 1.24659 1.05961 0.90224 0.97893 1.86519 1.84882 1.28714 1.34972 0.85777 0.79428 0.80499 0.77512 1.18095 1.17227 1.17380 1.20833 1.00040 0.92371 0.93321 1.20523 0.92894 0.99434 1.03545 1.27175 1.02801 1.08277 1.11280 0.91063 0.90965 0.91019 0.90894 0.90911 0.91071 0.90222 0.90042 0.91261 0.91656 0.88952 0.76378 0.88781 0.88786 0.85088 0.85927 0.90644 0.77331 0.84701 0.84539 0.89510 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.19 8.65 101.05 0.87 2.06 16 2 Si 0.98 -3.39 13.35 -169.99 -2.27 -5.66 16 3 C -0.44 0.89 8.65 101.05 0.87 1.77 16 4 C -0.40 0.57 5.85 38.29 0.22 0.79 16 5 C -0.13 0.01 5.66 -25.30 -0.14 -0.13 16 6 C 0.15 -0.06 2.47 -66.00 -0.16 -0.23 16 7 N -0.72 0.64 5.08 -51.93 -0.26 0.37 16 8 C 0.51 1.11 7.89 -10.98 -0.09 1.03 16 9 O -0.51 -3.62 16.14 -14.35 -0.23 -3.85 16 10 C 0.04 0.00 5.22 36.01 0.19 0.19 16 11 O -0.29 -1.06 9.67 -39.34 -0.38 -1.44 16 12 C 0.13 0.37 6.69 -39.22 -0.26 0.11 16 13 C -0.21 -0.22 9.04 -39.44 -0.36 -0.58 16 14 C -0.08 -0.11 8.66 -39.61 -0.34 -0.45 16 15 C -0.11 -0.20 5.38 -104.61 -0.56 -0.76 16 16 C -0.08 0.01 2.79 36.00 0.10 0.11 16 17 O -0.54 -0.23 12.81 -35.23 -0.45 -0.68 16 18 Si 0.94 -0.59 25.14 -169.99 -4.27 -4.86 16 19 H -0.26 0.12 7.11 56.52 0.40 0.52 16 20 H -0.25 -0.16 7.04 56.52 0.40 0.23 16 21 H -0.25 0.03 7.11 56.52 0.40 0.43 16 22 C -0.05 -0.09 9.68 -39.60 -0.38 -0.47 16 23 C -0.15 -0.38 9.99 -39.43 -0.39 -0.78 16 24 C -0.41 1.18 5.49 38.80 0.21 1.39 16 25 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 26 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.07 8.04 -51.93 -0.42 -0.49 16 32 H 0.08 -0.14 8.04 -51.93 -0.42 -0.56 16 33 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.09 0.13 7.52 -51.93 -0.39 -0.26 16 36 H 0.40 -1.65 8.60 -40.82 -0.35 -2.00 16 37 H 0.09 -0.24 7.65 -51.93 -0.40 -0.63 16 38 H 0.09 -0.25 7.67 -51.93 -0.40 -0.65 16 39 H 0.13 -0.23 6.30 -52.48 -0.33 -0.57 16 40 H 0.12 -0.02 4.86 -52.48 -0.25 -0.28 16 41 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 42 H 0.38 -1.52 8.74 45.56 0.40 -1.12 16 43 H 0.14 0.06 8.06 -52.49 -0.42 -0.37 16 44 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 45 H 0.09 -0.34 8.02 -51.93 -0.42 -0.76 16 46 H 0.09 -0.24 8.06 -51.93 -0.42 -0.66 16 LS Contribution 377.18 15.07 5.68 5.68 Total: 0.00 -9.24 377.18 -9.19 -18.43 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: -6.78 Total: -12.03 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.22 Total: 4.04 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -0.26 Total: 0.37 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -1.06 Total: -5.98 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: -6.54 Total: -10.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -9.24 -9.19 -18.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.536 kcal (2) G-P(sol) polarization free energy of solvation -9.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds