Wall clock time and date at job start Sun Mar 7 2021 13:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 N 1.46498 * 109.47533 * 190.93919 * 6 5 4 8 8 C 1.34777 * 119.99698 * 273.54425 * 7 6 5 9 9 O 1.21278 * 120.00529 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99832 * 179.97438 * 8 7 6 11 11 O 1.42900 * 109.47149 * 179.97438 * 10 8 7 12 12 C 1.35901 * 117.00216 * 180.02562 * 11 10 8 13 13 C 1.38734 * 120.05513 * 359.72955 * 12 11 10 14 14 C 1.38137 * 119.94382 * 179.74628 * 13 12 11 15 15 C 1.38265 * 120.06009 * 0.50301 * 14 13 12 16 16 C 1.50694 * 119.94805 * 179.74608 * 15 14 13 17 17 O 1.42898 * 109.47301 * 245.02186 * 16 15 14 18 18 Si 1.86302 * 109.47350 * 5.02582 * 16 15 14 19 19 H 1.48493 * 109.47229 * 179.97438 * 18 16 15 20 20 H 1.48499 * 109.46688 * 300.00132 * 18 16 15 21 21 H 1.48506 * 109.46944 * 59.99654 * 18 16 15 22 22 C 1.38264 * 120.10688 * 359.77365 * 15 14 13 23 23 C 1.38151 * 120.05647 * 359.97422 * 22 15 14 24 24 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 25 25 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 26 26 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 27 27 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 29 29 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 31 31 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 32 32 H 1.09002 * 111.04813 * 356.07768 * 4 2 1 33 33 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 34 34 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 35 35 H 1.09006 * 109.47935 * 70.98593 * 6 5 4 36 36 H 0.96995 * 120.00518 * 93.54592 * 7 6 5 37 37 H 1.09000 * 109.47109 * 300.00524 * 10 8 7 38 38 H 1.09001 * 109.46929 * 60.00250 * 10 8 7 39 39 H 1.08004 * 120.02645 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.97339 * 180.23321 * 14 13 12 41 41 H 1.09006 * 109.46714 * 125.02467 * 16 15 14 42 42 H 0.96698 * 114.00041 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.97352 * 179.97438 * 22 15 14 44 44 H 1.08006 * 120.02301 * 179.97438 * 23 22 15 45 45 H 1.08996 * 111.41269 * 283.05303 * 24 6 5 46 46 H 1.09006 * 111.49251 * 158.06559 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 7 4.1238 -2.9248 -1.4726 8 6 5.3807 -3.3997 -1.3669 9 8 6.1768 -2.8510 -0.6349 10 6 5.7965 -4.6134 -2.1577 11 8 7.1643 -4.9184 -1.8781 12 6 7.6997 -5.9926 -2.5154 13 6 6.9229 -6.7412 -3.3877 14 6 7.4709 -7.8296 -4.0383 15 6 8.7895 -8.1794 -3.8130 16 6 9.3831 -9.3706 -4.5197 17 8 9.7189 -10.3751 -3.5604 18 14 8.1431 -10.0567 -5.7291 19 1 8.7283 -11.2301 -6.4260 20 1 6.9187 -10.4735 -4.9996 21 1 7.7942 -9.0128 -6.7260 22 6 9.5641 -7.4384 -2.9397 23 6 9.0222 -6.3459 -2.2906 24 6 2.5568 -1.0142 -1.4447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.1907 2.2612 0.8899 29 1 3.6274 1.7027 -0.0005 30 1 2.1908 2.2612 -0.8900 31 1 3.2797 -0.4330 2.0151 32 1 1.7543 -1.3781 2.0843 33 1 4.1055 -2.5196 1.2701 34 1 2.5407 -3.0054 0.5873 35 1 4.5681 -1.0687 -0.6043 36 1 3.4870 -3.3640 -2.0578 37 1 5.1704 -5.4609 -1.8787 38 1 5.6802 -4.4106 -3.2224 39 1 5.8916 -6.4711 -3.5607 40 1 6.8677 -8.4105 -4.7204 41 1 10.2819 -9.0646 -5.0552 42 1 10.1067 -11.1728 -3.9455 43 1 10.5937 -7.7138 -2.7650 44 1 9.6277 -5.7677 -1.6082 45 1 1.8198 -1.7216 -1.8246 46 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:35:10 Heat of formation + Delta-G solvation = -119.171224 kcal Electronic energy + Delta-G solvation = -24311.997031 eV Core-core repulsion = 20711.285653 eV Total energy + Delta-G solvation = -3600.711378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58507 -40.66579 -39.00156 -37.35422 -37.06135 -33.76834 -32.42956 -31.83348 -30.18013 -29.14242 -28.71591 -28.36278 -26.17157 -24.72835 -24.00803 -22.41441 -21.71131 -21.34283 -19.53905 -18.48909 -18.27955 -17.53581 -17.41308 -16.87524 -16.72889 -15.96278 -15.76041 -15.68543 -15.47968 -15.14199 -14.51727 -14.45756 -14.38753 -14.07426 -13.90661 -13.83558 -13.59453 -13.57321 -13.42317 -13.41393 -13.16629 -13.01403 -12.66459 -12.51409 -12.44740 -12.22274 -12.08999 -11.84069 -11.69278 -11.65679 -11.14390 -10.77714 -10.56247 -10.47409 -10.27688 -10.07387 -10.05373 -9.24562 0.23722 0.27919 1.19207 1.39309 1.41946 1.48028 1.53286 1.75587 1.92164 1.96822 2.04099 2.52194 2.60154 2.71860 3.48332 3.55723 3.73450 3.83389 3.86946 3.96483 4.01151 4.02788 4.12692 4.25849 4.26379 4.39784 4.45533 4.46946 4.55198 4.67510 4.80663 4.81239 4.88312 4.90244 4.93111 4.99387 5.09170 5.13595 5.20987 5.21721 5.27883 5.44866 5.47941 5.50910 5.59718 5.66893 5.67960 6.23818 6.47415 6.84510 7.12825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.061 2.939 3 C -0.465 4.465 4 C -0.419 4.419 5 C -0.126 4.126 6 C 0.142 3.858 7 N -0.702 5.702 8 C 0.508 3.492 9 O -0.575 6.575 10 C 0.036 3.964 11 O -0.319 6.319 12 C 0.119 3.881 13 C -0.202 4.202 14 C -0.092 4.092 15 C -0.126 4.126 16 C -0.081 4.081 17 O -0.565 6.565 18 Si 0.980 3.020 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.255 1.255 22 C -0.056 4.056 23 C -0.165 4.165 24 C -0.409 4.409 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.421 0.579 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.162 0.838 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.397 0.603 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -1.253 -5.500 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.253 2.747 3 C -0.572 4.572 4 C -0.503 4.503 5 C -0.165 4.165 6 C 0.038 3.962 7 N -0.356 5.356 8 C 0.294 3.706 9 O -0.453 6.453 10 C -0.042 4.042 11 O -0.232 6.232 12 C 0.073 3.927 13 C -0.220 4.220 14 C -0.109 4.109 15 C -0.126 4.126 16 C -0.191 4.191 17 O -0.374 6.374 18 Si 0.804 3.196 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.179 1.179 22 C -0.074 4.074 23 C -0.184 4.184 24 C -0.493 4.493 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.259 0.741 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.179 0.821 40 H 0.155 0.845 41 H 0.111 0.889 42 H 0.247 0.753 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.127 0.873 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.258 -0.587 -5.020 8.045 hybrid contribution 0.677 -0.494 0.060 0.840 sum -5.582 -1.081 -4.961 7.545 Atomic orbital electron populations 1.26093 1.19829 1.05038 1.04836 0.79131 0.66233 0.64907 0.64454 1.26295 1.06361 1.19720 1.04831 1.26739 1.05570 1.06357 1.11642 1.22032 0.99982 0.99780 0.94701 1.21729 0.97801 0.86048 0.90655 1.45918 1.11458 1.31275 1.46978 1.20623 0.82777 0.85187 0.81996 1.90750 1.53176 1.60645 1.40770 1.22761 0.82341 0.97183 1.01935 1.86130 1.27298 1.44770 1.64991 1.19210 0.93400 0.87161 0.92884 1.21428 1.01778 0.98244 1.00553 1.21046 0.94259 0.96728 0.98915 1.19516 0.94480 0.97673 1.00952 1.24775 1.07039 0.89646 0.97635 1.86469 1.85223 1.29757 1.35946 0.85276 0.78013 0.79850 0.76463 1.18179 1.19216 1.17928 1.20976 1.00618 0.92285 0.93545 1.20676 0.93500 1.00059 1.04118 1.27259 1.01912 1.08588 1.11581 0.90550 0.91151 0.90538 0.91059 0.91965 0.90587 0.91500 0.89575 0.94746 0.90419 0.91541 0.74115 0.85932 0.85668 0.82074 0.84463 0.88931 0.75275 0.83916 0.85089 0.87328 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 3.18 8.65 113.37 0.98 4.16 16 2 Si 1.06 -7.96 13.35 68.60 0.92 -7.04 16 3 C -0.47 1.72 8.65 113.37 0.98 2.71 16 4 C -0.42 0.76 5.85 72.72 0.43 1.19 16 5 C -0.13 -0.14 5.66 31.52 0.18 0.04 16 6 C 0.14 -0.02 2.47 46.25 0.11 0.10 16 7 N -0.70 1.28 5.08 -436.60 -2.22 -0.93 16 8 C 0.51 2.75 7.89 87.66 0.69 3.44 16 9 O -0.57 -9.86 16.14 16.02 0.26 -9.60 16 10 C 0.04 -0.02 5.22 71.24 0.37 0.35 16 11 O -0.32 -2.75 9.67 -73.39 -0.71 -3.46 16 12 C 0.12 0.76 6.69 22.50 0.15 0.91 16 13 C -0.20 -0.29 9.04 22.36 0.20 -0.09 16 14 C -0.09 -0.20 8.66 22.25 0.19 0.00 16 15 C -0.13 -0.45 5.38 -19.85 -0.11 -0.56 16 16 C -0.08 0.07 2.79 71.23 0.20 0.27 16 17 O -0.56 -0.29 12.81 -148.98 -1.91 -2.20 16 18 Si 0.98 -2.07 25.14 68.60 1.72 -0.35 16 19 H -0.26 0.55 7.11 99.48 0.71 1.26 16 20 H -0.27 -0.22 7.04 99.48 0.70 0.48 16 21 H -0.26 0.35 7.11 99.48 0.71 1.06 16 22 C -0.06 -0.27 9.68 22.26 0.22 -0.06 16 23 C -0.16 -1.17 9.99 22.37 0.22 -0.94 16 24 C -0.41 2.86 5.49 73.05 0.40 3.26 16 25 H 0.08 -0.57 7.96 -2.39 -0.02 -0.59 16 26 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 27 H 0.08 -0.57 7.96 -2.38 -0.02 -0.59 16 28 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 29 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 31 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 32 H 0.09 -0.26 8.04 -2.39 -0.02 -0.28 16 33 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.07 0.36 7.52 -2.38 -0.02 0.34 16 36 H 0.42 -4.16 8.60 -92.71 -0.80 -4.96 16 37 H 0.12 -0.81 7.65 -2.39 -0.02 -0.83 16 38 H 0.13 -0.89 7.67 -2.39 -0.02 -0.91 16 39 H 0.16 -0.95 6.30 -2.91 -0.02 -0.96 16 40 H 0.14 -0.20 4.86 -2.91 -0.01 -0.22 16 41 H 0.09 -0.43 7.96 -2.38 -0.02 -0.45 16 42 H 0.40 -3.41 8.74 -74.06 -0.65 -4.06 16 43 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 44 H 0.13 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.11 -1.18 8.02 -2.39 -0.02 -1.19 16 46 H 0.09 -0.65 8.06 -2.38 -0.02 -0.67 16 Total: 0.00 -24.91 377.18 3.57 -21.34 By element: Atomic # 1 Polarization: -12.80 SS G_CDS: 0.29 Total: -12.52 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.22 Total: 14.77 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -2.22 Total: -0.93 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -2.36 Total: -15.27 kcal Atomic # 14 Polarization: -10.03 SS G_CDS: 2.64 Total: -7.39 kcal Total: -24.91 3.57 -21.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.833 kcal (2) G-P(sol) polarization free energy of solvation -24.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds