Wall clock time and date at job start Sun Mar 7 2021 13:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 111.29248 * 2 1 4 4 C 1.89522 * 111.50035 * 234.84343 * 2 1 3 5 5 C 1.55142 * 101.35640 * 245.87503 * 4 2 1 6 6 C 1.53579 * 111.29168 * 331.41615 * 5 4 2 7 7 N 1.46496 * 109.43415 * 169.03853 * 6 5 4 8 8 C 1.34784 * 119.99965 * 84.97802 * 7 6 5 9 9 O 1.21279 * 119.99582 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00091 * 179.97438 * 8 7 6 11 11 O 1.42896 * 109.47076 * 180.02562 * 10 8 7 12 12 C 1.35905 * 116.99849 * 180.02562 * 11 10 8 13 13 C 1.38712 * 120.05572 * 359.72003 * 12 11 10 14 14 C 1.38164 * 119.93966 * 179.76627 * 13 12 11 15 15 C 1.38246 * 120.05953 * 0.49449 * 14 13 12 16 16 C 1.38287 * 120.10644 * 359.76218 * 15 14 13 17 17 C 1.50702 * 119.96910 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47576 * 245.02404 * 17 16 15 19 19 Si 1.86303 * 109.47017 * 5.02428 * 17 16 15 20 20 H 1.48507 * 109.47201 * 60.00207 * 19 17 16 21 21 H 1.48503 * 109.47204 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47396 * 299.99692 * 19 17 16 23 23 C 1.38115 * 120.05983 * 0.02562 * 16 15 14 24 24 C 1.55915 * 109.50369 * 49.04142 * 6 5 4 25 25 H 1.08996 * 109.47140 * 294.89926 * 1 2 3 26 26 H 1.09003 * 109.46829 * 54.89548 * 1 2 3 27 27 H 1.08996 * 109.47108 * 174.89587 * 1 2 3 28 28 H 1.08994 * 109.47400 * 185.10569 * 3 2 1 29 29 H 1.09005 * 109.47314 * 305.10736 * 3 2 1 30 30 H 1.09006 * 109.47297 * 65.10365 * 3 2 1 31 31 H 1.08998 * 111.03441 * 127.85278 * 4 2 1 32 32 H 1.09008 * 111.08072 * 3.91071 * 4 2 1 33 33 H 1.09003 * 109.12430 * 210.93608 * 5 4 2 34 34 H 1.09003 * 109.12868 * 91.90331 * 5 4 2 35 35 H 1.08998 * 109.47087 * 289.01591 * 6 5 4 36 36 H 0.97003 * 120.00613 * 264.98386 * 7 6 5 37 37 H 1.09002 * 109.47217 * 300.00229 * 10 8 7 38 38 H 1.09003 * 109.46714 * 60.00210 * 10 8 7 39 39 H 1.07994 * 120.02856 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.97131 * 180.23709 * 14 13 12 41 41 H 1.07994 * 119.94553 * 179.74501 * 15 14 13 42 42 H 1.09001 * 109.46891 * 125.02055 * 17 16 15 43 43 H 0.96704 * 113.99606 * 59.99595 * 18 17 16 44 44 H 1.08000 * 120.03260 * 179.97438 * 23 16 15 45 45 H 1.09002 * 111.42836 * 76.90973 * 24 6 5 46 46 H 1.09001 * 111.42626 * 201.79891 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5395 1.7358 0.0000 4 6 2.5576 -1.0154 -1.4417 5 6 3.2480 -2.1828 -0.6884 6 6 3.7201 -1.7450 0.7059 7 7 4.1236 -2.9239 1.4763 8 6 5.3716 -3.4171 1.3494 9 8 6.1605 -2.8846 0.5978 10 6 5.7869 -4.6295 2.1423 11 8 7.1443 -4.9558 1.8377 12 6 7.6775 -6.0326 2.4728 13 6 6.9118 -6.7565 3.3749 14 6 7.4547 -7.8536 4.0156 15 6 8.7630 -8.2240 3.7660 16 6 9.5300 -7.5007 2.8710 17 6 10.9560 -7.9069 2.6016 18 8 11.8384 -6.8800 3.0586 19 14 11.3306 -9.4938 3.5030 20 1 10.4137 -10.5611 3.0280 21 1 12.7356 -9.8944 3.2371 22 1 11.1408 -9.2912 4.9618 23 6 8.9906 -6.4058 2.2246 24 6 2.5568 -1.0151 1.4440 25 1 -0.3633 0.4327 0.9321 26 1 -0.3633 0.5910 -0.8408 27 1 -0.3633 -1.0235 -0.0914 28 1 3.6251 1.7027 -0.0914 29 1 2.1208 2.2890 -0.8407 30 1 2.2684 2.2315 0.9322 31 1 3.2819 -0.4364 -2.0148 32 1 1.7572 -1.3828 -2.0839 33 1 4.1078 -2.5218 -1.2664 34 1 2.5427 -3.0073 -0.5841 35 1 4.5687 -1.0682 0.6063 36 1 3.4927 -3.3497 2.0776 37 1 5.6950 -4.4162 3.2073 38 1 5.1437 -5.4707 1.8835 39 1 5.8909 -6.4652 3.5731 40 1 6.8578 -8.4199 4.7152 41 1 9.1868 -9.0794 4.2709 42 1 11.0953 -8.0557 1.5308 43 1 11.7686 -6.6939 4.0050 44 1 9.5902 -5.8410 1.5261 45 1 1.8198 -1.7228 1.8236 46 1 2.9319 -0.3711 2.2394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17626288_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:35:40 Heat of formation + Delta-G solvation = -123.400498 kcal Electronic energy + Delta-G solvation = -24405.463717 eV Core-core repulsion = 20804.568945 eV Total energy + Delta-G solvation = -3600.894773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52327 -40.59838 -39.00527 -37.34464 -37.00338 -33.70948 -32.48588 -31.64287 -30.03103 -29.32752 -28.68896 -28.56546 -26.78073 -24.74144 -23.70513 -22.76201 -21.56594 -21.32314 -19.32666 -18.48773 -17.82873 -17.43661 -17.33008 -17.11509 -16.64999 -16.16194 -15.96332 -15.54373 -15.36287 -15.01621 -14.96627 -14.48452 -14.43478 -14.09793 -14.05490 -13.96171 -13.75966 -13.61328 -13.52103 -13.36471 -13.06859 -13.02171 -12.79075 -12.57695 -12.54305 -12.22334 -12.11090 -11.95874 -11.69547 -11.54186 -11.06055 -10.98431 -10.64556 -10.55686 -10.45876 -10.04530 -9.93493 -9.26649 0.19404 0.39491 1.12584 1.31319 1.43391 1.51921 1.52722 1.62958 1.74307 1.79341 1.91695 2.38017 2.65884 2.67598 3.46474 3.51231 3.64528 3.73653 3.82127 3.87898 3.88778 3.99506 4.05887 4.16603 4.25777 4.36504 4.40485 4.45626 4.54297 4.60893 4.62925 4.65445 4.65917 4.67385 4.88679 4.96476 4.96519 5.20049 5.22716 5.25372 5.31058 5.34056 5.36674 5.42342 5.45130 5.49284 5.64842 6.27335 6.43257 6.55814 7.15007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.979 3.021 3 C -0.445 4.445 4 C -0.396 4.396 5 C -0.128 4.128 6 C 0.149 3.851 7 N -0.719 5.719 8 C 0.513 3.487 9 O -0.512 6.512 10 C 0.040 3.960 11 O -0.288 6.288 12 C 0.129 3.871 13 C -0.206 4.206 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.080 4.080 17 C -0.083 4.083 18 O -0.536 6.536 19 Si 0.956 3.044 20 H -0.250 1.250 21 H -0.254 1.254 22 H -0.252 1.252 23 C -0.118 4.118 24 C -0.410 4.410 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.377 0.623 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 -0.930 3.423 6.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.176 2.824 3 C -0.553 4.553 4 C -0.483 4.483 5 C -0.167 4.167 6 C 0.045 3.955 7 N -0.373 5.373 8 C 0.297 3.703 9 O -0.386 6.386 10 C -0.039 4.039 11 O -0.200 6.200 12 C 0.084 3.916 13 C -0.225 4.225 14 C -0.090 4.090 15 C -0.181 4.181 16 C -0.080 4.080 17 C -0.194 4.194 18 O -0.341 6.341 19 Si 0.778 3.222 20 H -0.174 1.174 21 H -0.178 1.178 22 H -0.175 1.175 23 C -0.136 4.136 24 C -0.495 4.495 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.224 0.776 44 H 0.156 0.844 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.960 -1.141 2.536 5.687 hybrid contribution -0.848 -0.058 0.825 1.185 sum -5.808 -1.199 3.361 6.817 Atomic orbital electron populations 1.26004 1.19684 1.04671 1.04647 0.80365 0.67487 0.67483 0.67103 1.26039 1.06862 1.17764 1.04652 1.26459 1.05614 1.06087 1.10123 1.22056 1.01022 0.98805 0.94775 1.21663 0.97613 0.86050 0.90171 1.45998 1.12949 1.31854 1.46527 1.20085 0.82466 0.84840 0.82865 1.90782 1.51372 1.59359 1.37123 1.22490 0.83693 0.97296 1.00428 1.86179 1.26281 1.44094 1.63441 1.19064 0.93149 0.87044 0.92347 1.21292 1.00826 0.99232 1.01168 1.20881 0.94777 0.95420 0.97945 1.20987 0.95312 1.01267 1.00542 1.20121 0.96391 0.95243 0.96294 1.25059 0.86627 1.01256 1.06414 1.86542 1.60596 1.57367 1.29581 0.85602 0.81038 0.75906 0.79620 1.17362 1.17793 1.17549 1.20278 0.92472 0.98219 1.02670 1.27153 1.02770 1.08303 1.11316 0.91049 0.90966 0.91009 0.90895 0.90905 0.91056 0.90236 0.90062 0.91241 0.91680 0.89014 0.76387 0.88834 0.88831 0.85248 0.85199 0.85934 0.86197 0.77612 0.84418 0.89501 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.23 8.65 101.05 0.87 2.10 16 2 Si 0.98 -3.47 13.37 -169.99 -2.27 -5.74 16 3 C -0.44 0.92 8.65 101.05 0.87 1.79 16 4 C -0.40 0.59 5.85 38.29 0.22 0.81 16 5 C -0.13 0.02 5.65 -25.30 -0.14 -0.12 16 6 C 0.15 -0.08 2.45 -66.08 -0.16 -0.24 16 7 N -0.72 0.73 5.09 -52.01 -0.26 0.47 16 8 C 0.51 1.04 7.87 -10.98 -0.09 0.96 16 9 O -0.51 -3.59 16.16 -14.35 -0.23 -3.82 16 10 C 0.04 -0.01 5.22 36.01 0.19 0.18 16 11 O -0.29 -1.02 9.67 -39.35 -0.38 -1.40 16 12 C 0.13 0.31 6.69 -39.22 -0.26 0.05 16 13 C -0.21 -0.03 9.04 -39.43 -0.36 -0.39 16 14 C -0.07 0.01 10.04 -39.61 -0.40 -0.38 16 15 C -0.16 -0.07 8.67 -39.56 -0.34 -0.41 16 16 C -0.08 -0.09 5.35 -104.65 -0.56 -0.65 16 17 C -0.08 -0.01 2.80 36.01 0.10 0.09 16 18 O -0.54 -0.55 12.83 -35.23 -0.45 -1.00 16 19 Si 0.96 -0.44 25.14 -169.99 -4.27 -4.71 16 20 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 21 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 22 H -0.25 0.12 7.04 56.52 0.40 0.52 16 23 C -0.12 -0.31 9.62 -39.44 -0.38 -0.68 16 24 C -0.41 1.22 5.46 38.71 0.21 1.43 16 25 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 26 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.08 -0.07 8.04 -51.93 -0.42 -0.49 16 32 H 0.08 -0.14 8.05 -51.92 -0.42 -0.56 16 33 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.09 0.13 7.57 -51.93 -0.39 -0.27 16 36 H 0.40 -1.71 8.58 -40.82 -0.35 -2.06 16 37 H 0.09 -0.27 7.65 -51.93 -0.40 -0.67 16 38 H 0.09 -0.27 7.67 -51.93 -0.40 -0.67 16 39 H 0.13 -0.32 6.30 -52.49 -0.33 -0.65 16 40 H 0.13 -0.32 8.06 -52.48 -0.42 -0.75 16 41 H 0.12 -0.12 4.86 -52.49 -0.25 -0.37 16 42 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 43 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16 44 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 45 H 0.09 -0.35 8.01 -51.93 -0.42 -0.77 16 46 H 0.09 -0.25 8.06 -51.93 -0.42 -0.67 16 LS Contribution 377.16 15.07 5.68 5.68 Total: 0.00 -8.84 377.16 -9.19 -18.03 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: -6.78 Total: -12.03 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.22 Total: 4.53 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.26 Total: 0.47 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -1.06 Total: -6.22 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: -6.55 Total: -10.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -8.84 -9.19 -18.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.374 kcal (2) G-P(sol) polarization free energy of solvation -8.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds