Wall clock time and date at job start Sun Mar 7 2021 13:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99948 * 2 1 4 4 C 1.39447 * 120.12461 * 180.02562 * 3 2 1 5 5 O 1.34780 * 133.23838 * 0.39317 * 4 3 2 6 6 C 1.34925 * 110.84393 * 180.09987 * 5 4 3 7 7 C 1.46992 * 125.14548 * 179.81200 * 6 5 4 8 8 O 1.21648 * 120.00580 * 179.69834 * 7 6 5 9 9 N 1.34781 * 119.99586 * 359.70022 * 7 6 5 10 10 C 1.46500 * 119.99984 * 179.97438 * 9 7 6 11 11 C 1.53566 * 109.03824 * 276.74949 * 10 9 7 12 12 C 1.56066 * 109.55501 * 190.57720 * 11 10 9 13 13 Si 1.89657 * 99.28026 * 40.54612 * 12 11 10 14 14 C 1.86301 * 111.45806 * 221.68943 * 13 12 11 15 15 C 1.86297 * 111.46075 * 96.74249 * 13 12 11 16 16 C 1.55147 * 109.12524 * 155.00029 * 10 9 7 17 17 C 1.35813 * 109.71709 * 359.55324 * 6 5 4 18 18 C 1.40607 * 119.14134 * 180.02562 * 4 3 2 19 19 C 1.39770 * 120.12293 * 0.02562 * 18 4 3 20 20 C 1.50698 * 120.09939 * 179.97438 * 19 18 4 21 21 O 1.42895 * 109.47308 * 74.99714 * 20 19 18 22 22 Si 1.86299 * 109.47179 * 195.00343 * 20 19 18 23 23 H 1.48490 * 109.47573 * 59.99617 * 22 20 19 24 24 H 1.48502 * 109.47035 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46882 * 299.99517 * 22 20 19 26 26 C 1.36639 * 119.80975 * 359.97438 * 19 18 4 27 27 C 1.38263 * 120.12392 * 0.02668 * 3 2 1 28 28 H 1.09010 * 109.46657 * 299.99503 * 1 2 3 29 29 H 1.08996 * 109.47414 * 59.99164 * 1 2 3 30 30 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99868 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.10644 * 35.84578 * 10 9 7 33 33 H 1.09006 * 109.47935 * 310.55837 * 11 10 9 34 34 H 1.09003 * 109.47773 * 70.50828 * 11 10 9 35 35 H 1.08996 * 111.41269 * 283.05303 * 12 11 10 36 36 H 1.09006 * 111.49251 * 158.06559 * 12 11 10 37 37 H 1.09002 * 109.47148 * 294.93084 * 14 13 12 38 38 H 1.09001 * 109.46900 * 174.93236 * 14 13 12 39 39 H 1.09004 * 109.47198 * 54.93214 * 14 13 12 40 40 H 1.08995 * 109.47233 * 185.06503 * 15 13 12 41 41 H 1.08997 * 109.47080 * 305.06849 * 15 13 12 42 42 H 1.08998 * 109.47258 * 65.06460 * 15 13 12 43 43 H 1.09002 * 111.04815 * 30.94582 * 16 10 9 44 44 H 1.09002 * 111.08226 * 266.99694 * 16 10 9 45 45 H 1.08003 * 126.95620 * 180.28534 * 17 6 5 46 46 H 1.09006 * 109.46680 * 314.99640 * 20 19 18 47 47 H 0.96698 * 113.99653 * 60.00567 * 21 20 19 48 48 H 1.07997 * 119.75122 * 180.02562 * 26 19 18 49 49 H 1.07997 * 119.65753 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4141 0.3574 -0.0079 6 6 5.6317 0.9386 -0.0025 7 6 6.9131 0.2185 -0.0040 8 8 7.9596 0.8388 -0.0043 9 7 6.9287 -1.1292 -0.0051 10 6 8.2058 -1.8471 -0.0071 11 6 8.7244 -1.9426 -1.4494 12 6 9.9340 -2.9271 -1.5054 13 14 9.2909 -4.2691 -0.3297 14 6 10.6351 -4.8820 0.8054 15 6 8.5044 -5.6751 -1.2653 16 6 7.9987 -3.2547 0.6115 17 6 5.4944 2.2898 -0.0013 18 6 4.0554 2.5510 0.0000 19 6 3.2766 3.7117 0.0016 20 6 3.9382 5.0657 0.0028 21 8 4.4601 5.3420 -1.2984 22 14 2.6867 6.3679 0.4595 23 1 2.1444 6.0808 1.8117 24 1 3.3388 7.7021 0.4613 25 1 1.5795 6.3589 -0.5300 26 6 1.9137 3.6151 0.0022 27 6 1.2957 2.3726 0.0006 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 6.0942 -1.6239 -0.0045 32 1 8.9265 -1.2946 0.5956 33 1 7.9288 -2.3091 -2.0982 34 1 9.0424 -0.9563 -1.7874 35 1 10.8426 -2.4634 -1.1213 36 1 10.0844 -3.3182 -2.5117 37 1 11.4054 -5.3829 0.2191 38 1 10.2117 -5.5837 1.5242 39 1 11.0745 -4.0380 1.3372 40 1 8.0677 -6.3817 -0.5596 41 1 7.7242 -5.2851 -1.9189 42 1 9.2612 -6.1810 -1.8647 43 1 6.9921 -3.6243 0.4154 44 1 8.2093 -3.2479 1.6809 45 1 6.2874 3.0230 -0.0016 46 1 4.7509 5.0723 0.7292 47 1 3.7910 5.3520 -1.9965 48 1 1.3128 4.5126 0.0030 49 1 0.2175 2.3120 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17626288_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:36:09 Heat of formation + Delta-G solvation = -113.920922 kcal Electronic energy + Delta-G solvation = -30338.329422 eV Core-core repulsion = 26162.711242 eV Total energy + Delta-G solvation = -4175.618180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.151 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.61997 -40.94006 -40.36342 -39.08146 -37.27402 -36.99728 -33.57961 -33.51481 -31.88769 -30.93889 -29.59758 -29.25255 -28.61589 -28.54274 -26.35809 -25.43988 -24.19862 -23.94527 -22.02363 -21.59666 -21.28733 -19.73393 -18.94993 -18.53826 -17.86072 -17.62518 -17.21711 -17.02656 -16.61932 -16.24090 -16.03769 -15.85483 -15.60315 -15.43482 -15.06888 -14.74379 -14.54370 -14.42777 -14.13638 -14.01117 -13.97930 -13.84702 -13.59584 -13.52037 -13.40343 -13.36203 -13.33223 -12.99993 -12.80994 -12.63185 -12.50816 -12.37243 -12.17563 -12.08878 -11.79834 -11.66958 -11.34515 -10.94883 -10.89872 -10.70622 -10.45370 -10.44189 -10.09720 -9.72665 -8.96335 -0.54340 0.13555 0.76670 1.09209 1.31881 1.36407 1.48154 1.48930 1.76897 1.81835 1.87473 2.02555 2.13497 2.17167 2.43051 2.50344 3.28367 3.45499 3.54066 3.64393 3.80475 3.86029 3.89434 4.04187 4.08176 4.09050 4.15954 4.21574 4.27810 4.41134 4.45152 4.49547 4.51331 4.51971 4.64473 4.66791 4.68933 4.70023 4.85263 4.90852 4.93529 5.00829 5.10014 5.21753 5.25186 5.28420 5.31360 5.36764 5.40068 5.47857 5.51205 5.68898 6.18631 6.44664 6.54014 7.05002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.150 3.850 4 C 0.045 3.955 5 O -0.174 6.174 6 C -0.023 4.023 7 C 0.599 3.401 8 O -0.510 6.510 9 N -0.710 5.710 10 C 0.149 3.851 11 C -0.131 4.131 12 C -0.394 4.394 13 Si 0.978 3.022 14 C -0.444 4.444 15 C -0.442 4.442 16 C -0.413 4.413 17 C -0.105 4.105 18 C -0.079 4.079 19 C -0.098 4.098 20 C -0.079 4.079 21 O -0.534 6.534 22 Si 0.951 3.049 23 H -0.248 1.248 24 H -0.251 1.251 25 H -0.251 1.251 26 C -0.102 4.102 27 C -0.178 4.178 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.407 0.593 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.176 0.824 46 H 0.118 0.882 47 H 0.376 0.624 48 H 0.136 0.864 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -2.556 0.125 5.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.104 3.896 4 C -0.003 4.003 5 O -0.076 6.076 6 C -0.073 4.073 7 C 0.384 3.616 8 O -0.387 6.387 9 N -0.361 5.361 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.481 4.481 13 Si 1.175 2.825 14 C -0.552 4.552 15 C -0.551 4.551 16 C -0.498 4.498 17 C -0.126 4.126 18 C -0.080 4.080 19 C -0.099 4.099 20 C -0.190 4.190 21 O -0.339 6.339 22 Si 0.773 3.227 23 H -0.171 1.171 24 H -0.174 1.174 25 H -0.175 1.175 26 C -0.120 4.120 27 C -0.197 4.197 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.243 0.757 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.193 0.807 46 H 0.136 0.864 47 H 0.223 0.777 48 H 0.153 0.847 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.880 -2.000 0.705 4.422 hybrid contribution -1.095 -0.343 -0.393 1.212 sum -4.975 -2.343 0.312 5.508 Atomic orbital electron populations 1.23187 0.77360 1.04738 1.01765 1.86173 1.22119 1.25692 1.88393 1.17730 0.86528 0.85835 0.99464 1.18783 0.87447 0.87040 1.07041 1.84054 1.12694 1.34726 1.76080 1.22069 0.83919 0.92668 1.08667 1.16696 0.85346 0.82438 0.77139 1.90912 1.30243 1.67508 1.50040 1.46195 1.10562 1.05467 1.73855 1.21568 0.84905 0.92213 0.96758 1.22290 0.97691 1.01252 0.95766 1.26623 1.00457 1.10615 1.10425 0.80371 0.67209 0.67521 0.67409 1.26023 1.12555 1.06361 1.10252 1.26011 1.07377 1.13207 1.08457 1.27017 1.12413 1.02973 1.07353 1.22756 0.94698 0.94350 1.00760 1.19390 0.92679 0.91955 1.04025 1.19435 0.92736 0.94590 1.03101 1.24994 1.06826 0.97569 0.89589 1.86555 1.37956 1.93338 1.16011 0.85683 0.77268 0.78460 0.81252 1.17111 1.17435 1.17454 1.20548 0.93547 0.97786 1.00090 1.20942 1.00322 0.90549 1.07864 0.92122 0.92120 0.87637 0.75734 0.88978 0.91385 0.90766 0.90005 0.89993 0.90934 0.91127 0.90893 0.91054 0.91024 0.90942 0.89540 0.89434 0.80703 0.86375 0.77719 0.84697 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 101.05 0.99 0.93 16 2 O -0.31 -0.54 10.50 -19.62 -0.21 -0.75 16 3 C 0.15 0.32 6.70 -39.12 -0.26 0.05 16 4 C 0.05 0.16 7.35 -38.24 -0.28 -0.12 16 5 O -0.17 -0.66 10.28 2.66 0.03 -0.64 16 6 C -0.02 -0.08 7.07 -36.91 -0.26 -0.35 16 7 C 0.60 2.33 7.73 -12.71 -0.10 2.23 16 8 O -0.51 -3.35 16.49 5.23 0.09 -3.27 16 9 N -0.71 -0.96 5.07 -53.63 -0.27 -1.23 16 10 C 0.15 0.07 2.62 -66.50 -0.17 -0.10 16 11 C -0.13 -0.06 5.48 -24.80 -0.14 -0.20 16 12 C -0.39 0.45 5.96 38.80 0.23 0.68 16 13 Si 0.98 -2.97 13.35 -169.99 -2.27 -5.23 16 14 C -0.44 0.87 8.65 101.05 0.87 1.74 16 15 C -0.44 0.95 8.65 101.05 0.87 1.83 16 16 C -0.41 0.77 5.45 38.29 0.21 0.98 16 17 C -0.11 -0.35 10.68 -37.23 -0.40 -0.75 16 18 C -0.08 -0.24 6.16 -105.21 -0.65 -0.89 16 19 C -0.10 -0.11 5.26 -104.63 -0.55 -0.66 16 20 C -0.08 0.00 2.70 36.00 0.10 0.10 16 21 O -0.53 -0.37 12.88 -35.23 -0.45 -0.83 16 22 Si 0.95 -0.91 25.50 -169.99 -4.33 -5.24 16 23 H -0.25 0.08 7.11 56.52 0.40 0.49 16 24 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 25 H -0.25 0.37 6.74 56.52 0.38 0.75 16 26 C -0.10 0.01 8.62 -39.96 -0.34 -0.33 16 27 C -0.18 0.02 9.03 -39.38 -0.36 -0.34 16 28 H 0.06 -0.22 7.66 -51.92 -0.40 -0.61 16 29 H 0.06 -0.22 7.66 -51.93 -0.40 -0.62 16 30 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 31 H 0.41 -0.11 8.10 -40.82 -0.33 -0.44 16 32 H 0.09 0.16 7.58 -51.93 -0.39 -0.23 16 33 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 -0.07 8.06 -51.93 -0.42 -0.49 16 36 H 0.08 -0.11 8.06 -51.93 -0.42 -0.53 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 43 H 0.09 -0.22 7.73 -51.93 -0.40 -0.62 16 44 H 0.09 -0.17 8.04 -51.93 -0.42 -0.59 16 45 H 0.18 0.45 8.06 -52.48 -0.42 0.03 16 46 H 0.12 -0.05 7.96 -51.93 -0.41 -0.47 16 47 H 0.38 -1.00 8.70 45.56 0.40 -0.61 16 48 H 0.14 -0.28 4.84 -52.49 -0.25 -0.54 16 49 H 0.15 -0.42 6.26 -52.49 -0.33 -0.75 16 LS Contribution 403.86 15.07 6.09 6.09 Total: 0.00 -7.73 403.86 -8.33 -16.06 By element: Atomic # 1 Polarization: -3.01 SS G_CDS: -6.76 Total: -9.77 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.23 Total: 4.81 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -0.27 Total: -1.23 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.55 Total: -5.48 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: -6.60 Total: -10.48 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -7.73 -8.33 -16.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.865 kcal (2) G-P(sol) polarization free energy of solvation -7.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds