Wall clock time and date at job start Sun Mar 7 2021 13:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99948 * 2 1 4 4 C 1.39447 * 120.12461 * 180.02562 * 3 2 1 5 5 O 1.34780 * 133.23838 * 0.39317 * 4 3 2 6 6 C 1.34925 * 110.84393 * 180.09987 * 5 4 3 7 7 C 1.46992 * 125.14548 * 179.81200 * 6 5 4 8 8 O 1.21648 * 120.00580 * 179.69834 * 7 6 5 9 9 N 1.34781 * 119.99586 * 359.70022 * 7 6 5 10 10 C 1.46500 * 119.99984 * 179.97438 * 9 7 6 11 11 C 1.53566 * 109.03824 * 276.74949 * 10 9 7 12 12 C 1.56066 * 109.55501 * 190.57720 * 11 10 9 13 13 Si 1.89657 * 99.28026 * 40.54612 * 12 11 10 14 14 C 1.86301 * 111.45806 * 221.68943 * 13 12 11 15 15 C 1.86297 * 111.46075 * 96.74249 * 13 12 11 16 16 C 1.55147 * 109.12524 * 155.00029 * 10 9 7 17 17 C 1.35813 * 109.71709 * 359.55324 * 6 5 4 18 18 C 1.40607 * 119.14134 * 180.02562 * 4 3 2 19 19 C 1.39770 * 120.12293 * 0.02562 * 18 4 3 20 20 C 1.50698 * 120.09939 * 179.97438 * 19 18 4 21 21 O 1.42895 * 109.47308 * 74.99714 * 20 19 18 22 22 Si 1.86299 * 109.47179 * 195.00343 * 20 19 18 23 23 H 1.48490 * 109.47573 * 59.99617 * 22 20 19 24 24 H 1.48502 * 109.47035 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46882 * 299.99517 * 22 20 19 26 26 C 1.36639 * 119.80975 * 359.97438 * 19 18 4 27 27 C 1.38263 * 120.12392 * 0.02668 * 3 2 1 28 28 H 1.09010 * 109.46657 * 299.99503 * 1 2 3 29 29 H 1.08996 * 109.47414 * 59.99164 * 1 2 3 30 30 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99868 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.10644 * 35.84578 * 10 9 7 33 33 H 1.09006 * 109.47935 * 310.55837 * 11 10 9 34 34 H 1.09003 * 109.47773 * 70.50828 * 11 10 9 35 35 H 1.08996 * 111.41269 * 283.05303 * 12 11 10 36 36 H 1.09006 * 111.49251 * 158.06559 * 12 11 10 37 37 H 1.09002 * 109.47148 * 294.93084 * 14 13 12 38 38 H 1.09001 * 109.46900 * 174.93236 * 14 13 12 39 39 H 1.09004 * 109.47198 * 54.93214 * 14 13 12 40 40 H 1.08995 * 109.47233 * 185.06503 * 15 13 12 41 41 H 1.08997 * 109.47080 * 305.06849 * 15 13 12 42 42 H 1.08998 * 109.47258 * 65.06460 * 15 13 12 43 43 H 1.09002 * 111.04815 * 30.94582 * 16 10 9 44 44 H 1.09002 * 111.08226 * 266.99694 * 16 10 9 45 45 H 1.08003 * 126.95620 * 180.28534 * 17 6 5 46 46 H 1.09006 * 109.46680 * 314.99640 * 20 19 18 47 47 H 0.96698 * 113.99653 * 60.00567 * 21 20 19 48 48 H 1.07997 * 119.75122 * 180.02562 * 26 19 18 49 49 H 1.07997 * 119.65753 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4141 0.3574 -0.0079 6 6 5.6317 0.9386 -0.0025 7 6 6.9131 0.2185 -0.0040 8 8 7.9596 0.8388 -0.0043 9 7 6.9287 -1.1292 -0.0051 10 6 8.2058 -1.8471 -0.0071 11 6 8.7244 -1.9426 -1.4494 12 6 9.9340 -2.9271 -1.5054 13 14 9.2909 -4.2691 -0.3297 14 6 10.6351 -4.8820 0.8054 15 6 8.5044 -5.6751 -1.2653 16 6 7.9987 -3.2547 0.6115 17 6 5.4944 2.2898 -0.0013 18 6 4.0554 2.5510 0.0000 19 6 3.2766 3.7117 0.0016 20 6 3.9382 5.0657 0.0028 21 8 4.4601 5.3420 -1.2984 22 14 2.6867 6.3679 0.4595 23 1 2.1444 6.0808 1.8117 24 1 3.3388 7.7021 0.4613 25 1 1.5795 6.3589 -0.5300 26 6 1.9137 3.6151 0.0022 27 6 1.2957 2.3726 0.0006 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 6.0942 -1.6239 -0.0045 32 1 8.9265 -1.2946 0.5956 33 1 7.9288 -2.3091 -2.0982 34 1 9.0424 -0.9563 -1.7874 35 1 10.8426 -2.4634 -1.1213 36 1 10.0844 -3.3182 -2.5117 37 1 11.4054 -5.3829 0.2191 38 1 10.2117 -5.5837 1.5242 39 1 11.0745 -4.0380 1.3372 40 1 8.0677 -6.3817 -0.5596 41 1 7.7242 -5.2851 -1.9189 42 1 9.2612 -6.1810 -1.8647 43 1 6.9921 -3.6243 0.4154 44 1 8.2093 -3.2479 1.6809 45 1 6.2874 3.0230 -0.0016 46 1 4.7509 5.0723 0.7292 47 1 3.7910 5.3520 -1.9965 48 1 1.3128 4.5126 0.0030 49 1 0.2175 2.3120 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:36:08 Heat of formation + Delta-G solvation = -110.251571 kcal Electronic energy + Delta-G solvation = -30338.170307 eV Core-core repulsion = 26162.711242 eV Total energy + Delta-G solvation = -4175.459065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.151 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.79437 -41.10821 -40.49304 -39.10732 -37.44562 -37.02389 -33.74063 -33.67219 -31.94679 -31.03632 -29.56136 -29.07835 -28.49445 -28.35643 -26.35233 -25.51347 -24.25522 -24.06091 -22.11576 -21.78923 -21.38807 -19.86317 -19.05598 -18.56983 -17.92913 -17.78671 -17.41113 -17.05274 -16.62478 -16.24412 -16.09893 -15.83781 -15.79127 -15.58190 -15.05436 -14.77974 -14.58621 -14.46658 -14.29925 -13.85597 -13.82796 -13.71903 -13.60127 -13.47664 -13.35249 -13.32278 -13.15700 -13.00980 -12.75898 -12.51724 -12.48808 -12.31626 -12.10354 -12.08586 -11.86739 -11.62290 -11.62232 -11.05388 -10.77716 -10.61062 -10.45936 -10.42631 -10.21511 -9.86568 -9.04244 -0.70779 0.04715 0.58052 1.11847 1.18029 1.45686 1.56320 1.58350 1.85591 1.92981 1.94015 2.01763 2.06140 2.11948 2.35456 2.60666 3.17459 3.41122 3.58306 3.65868 3.76304 3.81923 3.84246 3.95191 4.08371 4.14567 4.22063 4.28956 4.38666 4.39313 4.41174 4.50798 4.54335 4.73257 4.80352 4.82354 4.83949 4.85775 4.86076 4.87584 4.93781 4.98968 5.00388 5.16693 5.17354 5.24265 5.28685 5.40038 5.47792 5.55928 5.61896 5.67115 6.17311 6.27929 6.70818 6.81916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.137 3.863 4 C 0.020 3.980 5 O -0.181 6.181 6 C -0.035 4.035 7 C 0.597 3.403 8 O -0.547 6.547 9 N -0.698 5.698 10 C 0.144 3.856 11 C -0.132 4.132 12 C -0.414 4.414 13 Si 1.065 2.935 14 C -0.459 4.459 15 C -0.453 4.453 16 C -0.421 4.421 17 C -0.111 4.111 18 C -0.094 4.094 19 C -0.103 4.103 20 C -0.088 4.088 21 O -0.552 6.552 22 Si 0.992 3.008 23 H -0.253 1.253 24 H -0.276 1.276 25 H -0.232 1.232 26 C -0.098 4.098 27 C -0.166 4.166 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.416 0.584 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.174 0.826 46 H 0.113 0.887 47 H 0.389 0.611 48 H 0.161 0.839 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -3.170 0.169 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.091 3.909 4 C -0.028 4.028 5 O -0.083 6.083 6 C -0.085 4.085 7 C 0.382 3.618 8 O -0.426 6.426 9 N -0.349 5.349 10 C 0.041 3.959 11 C -0.170 4.170 12 C -0.498 4.498 13 Si 1.256 2.744 14 C -0.566 4.566 15 C -0.561 4.561 16 C -0.504 4.504 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.104 4.104 20 C -0.197 4.197 21 O -0.359 6.359 22 Si 0.814 3.186 23 H -0.177 1.177 24 H -0.202 1.202 25 H -0.155 1.155 26 C -0.115 4.115 27 C -0.184 4.184 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.253 0.747 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.191 0.809 46 H 0.131 0.869 47 H 0.238 0.762 48 H 0.178 0.822 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.158 -2.641 0.729 6.740 hybrid contribution -0.440 -0.129 -0.420 0.622 sum -6.598 -2.770 0.309 7.162 Atomic orbital electron populations 1.23489 0.75317 1.06064 1.03112 1.86145 1.24313 1.25758 1.88456 1.17957 0.86095 0.86829 1.00030 1.19236 0.88256 0.87197 1.08080 1.84010 1.12713 1.35076 1.76514 1.22009 0.84013 0.92840 1.09623 1.16804 0.85019 0.83114 0.76855 1.90878 1.31375 1.68321 1.52074 1.46241 1.11471 1.04738 1.72414 1.21704 0.84125 0.93318 0.96758 1.22275 0.98714 1.00285 0.95746 1.26895 0.99582 1.11499 1.11807 0.79113 0.65062 0.65247 0.64966 1.26198 1.13186 1.06462 1.10760 1.26134 1.07582 1.13639 1.08757 1.27210 1.14006 1.01362 1.07824 1.22876 0.95389 0.94383 1.00565 1.19560 0.92333 0.92730 1.04906 1.19662 0.93391 0.94382 1.02986 1.25225 1.07438 0.97734 0.89302 1.86522 1.39278 1.93327 1.16776 0.85115 0.76545 0.75866 0.81106 1.17662 1.20163 1.15476 1.20879 0.93099 0.98849 0.98709 1.21358 1.01794 0.89623 1.05663 0.90712 0.90689 0.86527 0.74724 0.90664 0.90665 0.93635 0.90578 0.89574 0.90793 0.90693 0.91316 0.90574 0.91055 0.90789 0.88316 0.88980 0.80858 0.86889 0.76156 0.82166 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.11 10.50 -93.11 -0.98 -2.09 16 3 C 0.14 0.58 6.70 22.57 0.15 0.73 16 4 C 0.02 0.18 7.35 23.14 0.17 0.35 16 5 O -0.18 -1.79 10.28 -13.41 -0.14 -1.93 16 6 C -0.03 -0.36 7.07 24.00 0.17 -0.19 16 7 C 0.60 6.45 7.73 86.54 0.67 7.12 16 8 O -0.55 -9.20 16.49 -4.18 -0.07 -9.27 16 9 N -0.70 -3.35 5.07 -441.82 -2.24 -5.59 16 10 C 0.14 0.39 2.62 45.92 0.12 0.51 16 11 C -0.13 -0.38 5.48 31.85 0.17 -0.20 16 12 C -0.41 0.51 5.96 73.05 0.44 0.95 16 13 Si 1.06 -6.81 13.35 68.60 0.92 -5.90 16 14 C -0.46 1.99 8.65 113.37 0.98 2.97 16 15 C -0.45 2.44 8.65 113.37 0.98 3.42 16 16 C -0.42 1.53 5.45 72.72 0.40 1.93 16 17 C -0.11 -1.07 10.68 23.79 0.25 -0.82 16 18 C -0.09 -0.71 6.16 -20.25 -0.12 -0.84 16 19 C -0.10 -0.26 5.26 -19.87 -0.10 -0.36 16 20 C -0.09 -0.04 2.70 71.24 0.19 0.16 16 21 O -0.55 -1.16 12.88 -148.98 -1.92 -3.08 16 22 Si 0.99 -2.83 25.50 68.60 1.75 -1.08 16 23 H -0.25 0.50 7.11 99.48 0.71 1.21 16 24 H -0.28 -0.39 7.11 99.48 0.71 0.31 16 25 H -0.23 1.36 6.74 99.48 0.67 2.03 16 26 C -0.10 0.16 8.62 22.02 0.19 0.35 16 27 C -0.17 0.29 9.03 22.40 0.20 0.50 16 28 H 0.07 -0.68 7.66 -2.38 -0.02 -0.70 16 29 H 0.07 -0.69 7.66 -2.39 -0.02 -0.71 16 30 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 31 H 0.42 0.40 8.10 -92.70 -0.75 -0.35 16 32 H 0.08 0.47 7.58 -2.39 -0.02 0.45 16 33 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 34 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.08 -0.01 8.06 -2.39 -0.02 -0.03 16 36 H 0.09 -0.19 8.06 -2.38 -0.02 -0.21 16 37 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 40 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 41 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 42 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.10 -0.57 7.73 -2.39 -0.02 -0.59 16 44 H 0.09 -0.37 8.04 -2.39 -0.02 -0.39 16 45 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 46 H 0.11 0.08 7.96 -2.38 -0.02 0.06 16 47 H 0.39 -2.04 8.70 -74.06 -0.64 -2.69 16 48 H 0.16 -1.13 4.84 -2.91 -0.01 -1.15 16 49 H 0.18 -1.59 6.26 -2.91 -0.02 -1.61 16 Total: 0.00 -20.62 403.86 3.61 -17.01 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: 0.31 Total: -5.68 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.97 Total: 17.60 kcal Atomic # 7 Polarization: -3.35 SS G_CDS: -2.24 Total: -5.59 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -3.10 Total: -16.37 kcal Atomic # 14 Polarization: -9.64 SS G_CDS: 2.67 Total: -6.98 kcal Total: -20.62 3.61 -17.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.240 kcal (2) G-P(sol) polarization free energy of solvation -20.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds