Wall clock time and date at job start Sun Mar 7 2021 13:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 111.24177 * 2 1 4 4 C 1.89341 * 111.45849 * 234.85899 * 2 1 3 5 5 C 1.55124 * 101.32371 * 239.10963 * 4 2 1 6 6 C 1.53574 * 111.30302 * 28.65713 * 5 4 2 7 7 N 1.46504 * 109.47343 * 190.88707 * 6 5 4 8 8 C 1.34769 * 120.00148 * 274.30095 * 7 6 5 9 9 O 1.21284 * 120.00375 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00022 * 180.02562 * 8 7 6 11 11 N 1.46497 * 109.47159 * 180.02562 * 10 8 7 12 12 C 1.36836 * 125.06574 * 264.97326 * 11 10 8 13 13 C 1.34228 * 109.94163 * 180.02562 * 12 11 10 14 14 C 1.50699 * 126.50085 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.46891 * 104.98035 * 14 13 12 16 16 Si 1.86296 * 109.47070 * 344.98101 * 14 13 12 17 17 H 1.48494 * 109.47157 * 59.99972 * 16 14 13 18 18 H 1.48505 * 109.46998 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47140 * 299.99630 * 16 14 13 20 20 C 1.46494 * 107.00128 * 0.02562 * 13 12 11 21 21 C 1.39592 * 134.03461 * 180.02562 * 20 13 12 22 22 C 1.36665 * 119.76143 * 179.97438 * 21 20 13 23 23 C 1.38787 * 120.52924 * 359.97438 * 22 21 20 24 24 C 1.37788 * 120.66721 * 359.97438 * 23 22 21 25 25 C 1.37698 * 125.06084 * 85.00101 * 11 10 8 26 26 C 1.55909 * 109.47175 * 310.89198 * 6 5 4 27 27 H 1.09000 * 109.47062 * 294.93441 * 1 2 3 28 28 H 1.09002 * 109.46666 * 54.93429 * 1 2 3 29 29 H 1.08994 * 109.47314 * 174.92996 * 1 2 3 30 30 H 1.09001 * 109.46895 * 185.06529 * 3 2 1 31 31 H 1.08995 * 109.47319 * 305.06114 * 3 2 1 32 32 H 1.08997 * 109.46880 * 65.06772 * 3 2 1 33 33 H 1.09000 * 111.04735 * 357.16512 * 4 2 1 34 34 H 1.09002 * 111.04751 * 121.09200 * 4 2 1 35 35 H 1.08999 * 109.15718 * 268.14611 * 5 4 2 36 36 H 1.08996 * 109.08065 * 149.12291 * 5 4 2 37 37 H 1.09004 * 109.46987 * 70.89524 * 6 5 4 38 38 H 0.97004 * 119.99606 * 94.30187 * 7 6 5 39 39 H 1.08996 * 109.47142 * 59.99888 * 10 8 7 40 40 H 1.09006 * 109.46789 * 299.99890 * 10 8 7 41 41 H 1.08000 * 125.02336 * 0.04549 * 12 11 10 42 42 H 1.08999 * 109.47584 * 224.97810 * 14 13 12 43 43 H 0.96697 * 114.00046 * 300.00192 * 15 14 13 44 44 H 1.07997 * 120.11484 * 0.25719 * 21 20 13 45 45 H 1.08001 * 119.73347 * 180.02562 * 22 21 20 46 46 H 1.08002 * 119.66452 * 180.02562 * 23 22 21 47 47 H 1.08002 * 120.11295 * 180.02562 * 24 23 22 48 48 H 1.08996 * 111.43139 * 158.16830 * 26 6 5 49 49 H 1.09001 * 111.42699 * 283.06231 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5557 -1.0143 -1.4410 5 6 3.3939 -2.0804 -0.6879 6 6 2.8147 -2.3628 0.7062 7 7 3.7664 -3.1673 1.4766 8 6 3.7632 -4.5099 1.3599 9 8 2.9729 -5.0522 0.6168 10 6 4.7417 -5.3375 2.1528 11 7 4.5377 -6.7565 1.8517 12 6 3.7639 -7.6129 2.5867 13 6 3.7916 -8.8386 2.0403 14 6 3.0728 -10.0623 2.5468 15 8 1.9452 -10.3322 1.7115 16 14 2.4951 -9.7650 4.2928 17 1 1.5714 -8.6026 4.3174 18 1 1.7862 -10.9707 4.7918 19 1 3.6669 -9.4846 5.1608 20 6 4.6542 -8.7613 0.8587 21 6 5.0662 -9.6845 -0.1039 22 6 5.8991 -9.2875 -1.1120 23 6 6.3386 -7.9732 -1.1869 24 6 5.9435 -7.0453 -0.2480 25 6 5.0965 -7.4275 0.7869 26 6 2.5568 -1.0141 1.4447 27 1 -0.3633 0.4332 0.9319 28 1 -0.3633 0.5904 -0.8412 29 1 -0.3633 -1.0236 -0.0908 30 1 3.6237 1.7042 -0.0907 31 1 2.1194 2.2890 -0.8411 32 1 2.2658 2.2320 0.9319 33 1 1.7533 -1.4791 -2.0139 34 1 3.1878 -0.4010 -2.0832 35 1 4.4179 -1.7219 -0.5832 36 1 3.3984 -3.0041 -1.2665 37 1 1.8760 -2.9076 0.6061 38 1 4.3987 -2.7335 2.0707 39 1 4.5841 -5.1653 3.2175 40 1 5.7592 -5.0522 1.8853 41 1 3.2123 -7.3424 3.4749 42 1 3.7508 -10.9156 2.5287 43 1 1.2984 -9.6141 1.6796 44 1 4.7242 -10.7077 -0.0547 45 1 6.2173 -10.0020 -1.8567 46 1 6.9963 -7.6744 -1.9898 47 1 6.2906 -6.0248 -0.3152 48 1 1.8202 -1.1300 2.2397 49 1 3.4837 -0.5847 1.8248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626288_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:39:41 Heat of formation + Delta-G solvation = -43.571075 kcal Electronic energy + Delta-G solvation = -28196.198877 eV Core-core repulsion = 24440.032149 eV Total energy + Delta-G solvation = -3756.166728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55212 -40.76446 -38.14138 -37.74759 -37.15649 -34.26089 -33.47059 -31.43955 -30.26317 -29.76078 -29.13352 -28.54944 -28.38515 -25.84643 -24.61814 -23.76309 -22.80984 -21.77654 -21.33548 -20.68021 -18.65749 -18.47120 -17.84257 -17.38582 -16.91065 -16.45103 -16.34904 -16.05371 -15.83736 -15.62761 -15.37954 -14.90444 -14.76529 -14.53257 -14.50083 -14.39694 -13.92736 -13.86623 -13.70383 -13.59544 -13.44339 -13.29906 -13.17551 -13.00635 -12.72868 -12.67825 -12.57708 -12.49414 -12.34120 -12.15634 -11.91564 -11.69157 -11.68793 -11.24739 -10.80295 -10.67408 -10.49726 -10.48889 -10.28376 -10.04865 -9.17832 -8.64446 0.12315 0.62738 1.21664 1.36138 1.43625 1.48433 1.56631 1.64025 1.70795 1.92486 1.94666 2.00901 2.28590 2.61855 2.94508 3.56243 3.64132 3.66400 3.72815 3.80831 3.87020 4.02787 4.08598 4.11147 4.20970 4.24883 4.29071 4.44353 4.50533 4.53055 4.59002 4.70895 4.77735 4.78067 4.78493 4.85993 4.87984 4.89238 4.97511 5.07932 5.13004 5.19997 5.26503 5.43138 5.49545 5.50414 5.57655 5.65323 5.65550 5.72879 5.74088 6.17193 6.22083 6.49664 6.74616 7.15435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.057 2.943 3 C -0.450 4.450 4 C -0.420 4.420 5 C -0.123 4.123 6 C 0.144 3.856 7 N -0.705 5.705 8 C 0.486 3.514 9 O -0.573 6.573 10 C 0.086 3.914 11 N -0.467 5.467 12 C 0.062 3.938 13 C -0.217 4.217 14 C -0.053 4.053 15 O -0.560 6.560 16 Si 0.994 3.006 17 H -0.248 1.248 18 H -0.273 1.273 19 H -0.249 1.249 20 C -0.115 4.115 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.107 4.107 24 C -0.137 4.137 25 C 0.090 3.910 26 C -0.407 4.407 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.420 0.580 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.192 0.808 42 H 0.110 0.890 43 H 0.384 0.616 44 H 0.124 0.876 45 H 0.138 0.862 46 H 0.145 0.855 47 H 0.129 0.871 48 H 0.091 0.909 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 8.272 5.044 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.248 2.752 3 C -0.558 4.558 4 C -0.504 4.504 5 C -0.162 4.162 6 C 0.040 3.960 7 N -0.358 5.358 8 C 0.272 3.728 9 O -0.452 6.452 10 C -0.038 4.038 11 N -0.150 5.150 12 C -0.064 4.064 13 C -0.224 4.224 14 C -0.163 4.163 15 O -0.366 6.366 16 Si 0.815 3.185 17 H -0.171 1.171 18 H -0.197 1.197 19 H -0.173 1.173 20 C -0.119 4.119 21 C -0.103 4.103 22 C -0.173 4.173 23 C -0.126 4.126 24 C -0.157 4.157 25 C -0.015 4.015 26 C -0.491 4.491 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.258 0.742 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.209 0.791 42 H 0.128 0.872 43 H 0.232 0.768 44 H 0.142 0.858 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.147 0.853 48 H 0.109 0.891 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.415 7.828 5.357 9.788 hybrid contribution 0.014 0.147 -0.728 0.742 sum 2.430 7.975 4.629 9.535 Atomic orbital electron populations 1.26295 1.21896 1.04123 1.04855 0.79197 0.65317 0.65977 0.64674 1.26092 1.06964 1.17873 1.04884 1.26740 1.05196 1.06842 1.11615 1.22003 1.00754 0.98625 0.94844 1.21612 0.91893 0.91997 0.90544 1.46044 1.38454 1.05104 1.46200 1.21508 0.84901 0.83771 0.82647 1.90791 1.41532 1.72650 1.40214 1.21990 1.00999 0.77292 1.03544 1.43425 1.41090 1.08022 1.22433 1.21989 0.96870 0.88988 0.98532 1.20845 1.06509 0.96192 0.98863 1.24544 0.89300 0.96730 1.05704 1.86459 1.33372 1.45919 1.70893 0.85137 0.80238 0.80116 0.72983 1.17113 1.19733 1.17251 1.19337 1.01302 0.93392 0.97895 1.20489 0.97138 0.99066 0.93646 1.20933 0.99877 0.96991 0.99486 1.21131 0.99947 0.92925 0.98558 1.20225 1.00336 1.00555 0.94577 1.18425 0.99458 0.91867 0.91753 1.27189 1.08404 1.02147 1.11396 0.90546 0.91102 0.92033 0.90575 0.91225 0.90458 0.91712 0.89705 0.90538 0.95025 0.91823 0.74204 0.82164 0.83962 0.79144 0.87214 0.76808 0.85811 0.84385 0.83736 0.85282 0.89066 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.91 8.65 113.37 0.98 2.89 16 2 Si 1.06 -8.42 13.36 68.60 0.92 -7.50 16 3 C -0.45 3.33 8.65 113.37 0.98 4.31 16 4 C -0.42 0.90 5.85 72.71 0.43 1.33 16 5 C -0.12 -0.03 5.65 31.52 0.18 0.15 16 6 C 0.14 -0.25 2.46 46.19 0.11 -0.13 16 7 N -0.70 3.12 5.08 -436.85 -2.22 0.90 16 8 C 0.49 0.76 7.87 87.66 0.69 1.45 16 9 O -0.57 -7.65 16.07 -3.04 -0.05 -7.70 16 10 C 0.09 -0.40 6.48 85.63 0.56 0.15 16 11 N -0.47 -1.88 2.27 -519.99 -1.18 -3.06 16 12 C 0.06 0.22 9.89 83.00 0.82 1.04 16 13 C -0.22 -1.54 5.57 -18.63 -0.10 -1.64 16 14 C -0.05 -0.22 3.06 71.24 0.22 -0.01 16 15 O -0.56 -3.90 12.88 -148.98 -1.92 -5.82 16 16 Si 0.99 -0.01 26.08 68.60 1.79 1.78 16 17 H -0.25 0.32 7.03 99.48 0.70 1.02 16 18 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 19 H -0.25 0.08 7.11 99.48 0.71 0.79 16 20 C -0.11 -1.28 6.35 -20.20 -0.13 -1.41 16 21 C -0.08 -0.86 10.05 22.23 0.22 -0.64 16 22 C -0.15 -1.13 9.97 22.03 0.22 -0.91 16 23 C -0.11 -0.65 10.01 22.29 0.22 -0.43 16 24 C -0.14 -0.95 10.00 22.37 0.22 -0.73 16 25 C 0.09 0.82 6.80 39.03 0.27 1.08 16 26 C -0.41 3.32 5.47 72.99 0.40 3.72 16 27 H 0.08 -0.39 7.96 -2.39 -0.02 -0.40 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 30 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 31 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.08 -0.62 7.96 -2.39 -0.02 -0.63 16 33 H 0.06 0.04 8.04 -2.39 -0.02 0.02 16 34 H 0.08 -0.27 8.04 -2.39 -0.02 -0.29 16 35 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.06 0.26 7.55 -2.38 -0.02 0.24 16 38 H 0.42 -5.11 8.59 -92.71 -0.80 -5.90 16 39 H 0.16 -2.05 8.12 -2.39 -0.02 -2.07 16 40 H 0.14 -1.39 8.14 -2.38 -0.02 -1.41 16 41 H 0.19 -0.59 6.29 -2.91 -0.02 -0.61 16 42 H 0.11 0.40 7.96 -2.39 -0.02 0.39 16 43 H 0.38 0.55 8.70 -74.06 -0.64 -0.09 16 44 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 45 H 0.14 0.41 8.06 -2.91 -0.02 0.38 16 46 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 47 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 48 H 0.09 -0.77 8.06 -2.39 -0.02 -0.79 16 49 H 0.11 -1.29 8.01 -2.39 -0.02 -1.31 16 Total: 0.00 -25.97 403.59 3.88 -22.10 By element: Atomic # 1 Polarization: -11.18 SS G_CDS: 0.25 Total: -10.93 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.29 Total: 10.24 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -3.40 Total: -2.15 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.97 Total: -13.53 kcal Atomic # 14 Polarization: -8.43 SS G_CDS: 2.71 Total: -5.72 kcal Total: -25.97 3.88 -22.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626288_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.476 kcal (2) G-P(sol) polarization free energy of solvation -25.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds