Wall clock time and date at job start Sun Mar 7 2021 14:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 109.47476 * 2 1 4 4 C 1.86299 * 109.47063 * 239.99890 * 2 1 3 5 5 C 1.86307 * 109.47024 * 120.00133 * 2 1 3 6 6 N 1.46495 * 109.47231 * 54.98755 * 5 2 1 7 7 C 1.46500 * 120.00196 * 275.16041 * 6 5 2 8 8 C 1.50698 * 109.47146 * 270.00185 * 7 6 5 9 9 C 1.38236 * 119.99667 * 269.72344 * 8 7 6 10 10 C 1.38231 * 119.99589 * 179.76831 * 9 8 7 11 11 C 1.38239 * 120.00114 * 0.50515 * 10 9 8 12 12 C 1.38234 * 119.99767 * 359.75257 * 11 10 9 13 13 C 1.38228 * 120.00121 * 90.00117 * 8 7 6 14 14 C 1.34780 * 119.99832 * 95.16297 * 6 5 2 15 15 O 1.21290 * 119.99768 * 185.30844 * 14 6 5 16 16 C 1.50697 * 120.00256 * 5.30008 * 14 6 5 17 17 C 1.50699 * 109.47429 * 174.99019 * 16 14 6 18 18 C 1.34841 * 125.89257 * 274.69755 * 17 16 14 19 19 C 1.40892 * 107.42017 * 180.26020 * 18 17 16 20 20 C 1.34849 * 107.41321 * 359.97438 * 19 18 17 21 21 C 1.50698 * 125.88933 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47734 * 120.03941 * 21 20 19 23 23 Si 1.86303 * 109.47082 * 0.03586 * 21 20 19 24 24 H 1.48502 * 109.47313 * 300.00011 * 23 21 20 25 25 H 1.48494 * 109.47063 * 60.00240 * 23 21 20 26 26 H 1.48500 * 109.47052 * 180.02562 * 23 21 20 27 27 N 1.36342 * 108.22161 * 0.02562 * 20 19 18 28 28 H 1.08998 * 109.46753 * 300.00185 * 1 2 3 29 29 H 1.09006 * 109.46870 * 59.99806 * 1 2 3 30 30 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47502 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46853 * 300.00361 * 3 2 1 33 33 H 1.09000 * 109.46845 * 59.99859 * 3 2 1 34 34 H 1.09002 * 109.46956 * 304.94472 * 4 2 1 35 35 H 1.09000 * 109.47174 * 64.94370 * 4 2 1 36 36 H 1.09003 * 109.47169 * 184.94837 * 4 2 1 37 37 H 1.08998 * 109.46610 * 294.99001 * 5 2 1 38 38 H 1.08996 * 109.47099 * 174.99182 * 5 2 1 39 39 H 1.09001 * 109.46870 * 30.00225 * 7 6 5 40 40 H 1.09003 * 109.46928 * 149.99537 * 7 6 5 41 41 H 1.07997 * 120.00215 * 0.02562 * 9 8 7 42 42 H 1.08005 * 120.00215 * 180.23558 * 10 9 8 43 43 H 1.07999 * 119.99838 * 179.72619 * 11 10 9 44 44 H 1.07996 * 119.99423 * 179.97438 * 12 11 10 45 45 H 1.08002 * 120.00093 * 359.97438 * 13 8 7 46 46 H 1.09000 * 109.46775 * 54.98761 * 16 14 6 47 47 H 1.09007 * 109.46764 * 294.99130 * 16 14 6 48 48 H 1.08004 * 126.29183 * 0.23257 * 18 17 16 49 49 H 1.08001 * 126.29395 * 180.02562 * 19 18 17 50 50 H 1.09005 * 109.47004 * 240.04437 * 21 20 19 51 51 H 0.96693 * 114.00462 * 180.02562 * 22 21 20 52 52 H 0.97005 * 125.63442 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5212 6 7 1.8996 -2.2202 1.5830 7 6 0.5753 -2.4158 2.1781 8 6 0.7223 -2.6860 3.6533 9 6 0.8575 -3.9844 4.1080 10 6 0.9972 -4.2319 5.4608 11 6 0.9912 -3.1818 6.3598 12 6 0.8507 -1.8839 5.9055 13 6 0.7163 -1.6360 4.5523 14 6 2.5804 -3.2750 1.0925 15 8 2.0589 -4.3694 1.0556 16 6 3.9896 -3.0945 0.5898 17 6 4.5644 -4.4358 0.2135 18 6 5.1667 -5.3015 1.0537 19 6 5.5589 -6.4220 0.2949 20 6 5.1808 -6.1984 -0.9800 21 6 5.3971 -7.1327 -2.1424 22 8 4.1341 -7.4943 -2.7046 23 14 6.2757 -8.6657 -1.5518 24 1 7.5884 -8.2901 -0.9677 25 1 5.4502 -9.3427 -0.5196 26 1 6.4894 -9.5862 -2.6974 27 7 4.5700 -4.9807 -1.0362 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2702 -0.8900 33 1 2.1207 2.2702 0.8900 34 1 2.0501 -1.8772 -1.5665 35 1 2.1947 -0.3159 -2.4089 36 1 3.5704 -0.9557 -1.4779 37 1 2.1957 -0.3152 2.4088 38 1 3.5702 -0.9567 1.4775 39 1 -0.0252 -1.5180 2.0312 40 1 0.0840 -3.2636 1.7005 41 1 0.8581 -4.8051 3.4060 42 1 1.1066 -5.2461 5.8158 43 1 1.0959 -3.3756 7.4171 44 1 0.8456 -1.0636 6.6079 45 1 0.6066 -0.6219 4.1974 46 1 4.5998 -2.6443 1.3728 47 1 3.9827 -2.4438 -0.2848 48 1 5.3206 -5.1616 2.1135 49 1 6.0680 -7.2991 0.6663 50 1 6.0032 -6.6358 -2.9000 51 1 4.1970 -8.0960 -3.4589 52 1 4.2007 -4.5700 -1.8337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_14644196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:14:35 Heat of formation + Delta-G solvation = -31.019969 kcal Electronic energy + Delta-G solvation = -30763.260913 eV Core-core repulsion = 26852.100823 eV Total energy + Delta-G solvation = -3911.160090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.35604 -41.01128 -39.76030 -37.70875 -36.61713 -33.70857 -32.39485 -31.95863 -31.81168 -29.75482 -29.51558 -28.41903 -28.30432 -27.71675 -26.51383 -24.84828 -23.45617 -22.51623 -21.41137 -21.31566 -20.14313 -18.52565 -18.25827 -18.01559 -17.78182 -16.98465 -16.70080 -16.19289 -15.91641 -15.84823 -15.17341 -15.15625 -14.84101 -14.48629 -14.40813 -14.31788 -14.21278 -14.12823 -14.01010 -13.95473 -13.83299 -13.60120 -13.48044 -13.40249 -13.33155 -13.19748 -13.00610 -12.92943 -12.82859 -12.70730 -12.45257 -12.25898 -11.99268 -11.91368 -11.86896 -11.58303 -10.98531 -10.75108 -10.72324 -10.45893 -9.85239 -9.83391 -9.74904 -9.16332 -8.94824 0.32442 0.46985 1.01089 1.19371 1.47294 1.50731 1.55842 1.77047 1.90249 1.91273 1.95715 1.97717 2.32574 2.46059 2.68357 2.93069 3.46783 3.61464 3.78172 3.85219 3.95391 3.98249 4.12747 4.14145 4.25658 4.28269 4.32876 4.33707 4.42262 4.55230 4.57265 4.69145 4.73853 4.75696 4.77437 4.80741 4.83394 4.84779 4.90939 4.93643 5.04572 5.07806 5.13126 5.19488 5.24572 5.48595 5.53405 5.56816 5.60147 5.63843 5.66145 5.71929 5.96198 6.08556 6.09248 6.37410 6.65648 6.76807 7.22373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.471 4.471 2 Si 1.069 2.931 3 C -0.458 4.458 4 C -0.473 4.473 5 C -0.209 4.209 6 N -0.581 5.581 7 C 0.148 3.852 8 C -0.113 4.113 9 C -0.119 4.119 10 C -0.138 4.138 11 C -0.126 4.126 12 C -0.128 4.128 13 C -0.107 4.107 14 C 0.507 3.493 15 O -0.572 6.572 16 C -0.076 4.076 17 C 0.038 3.962 18 C -0.201 4.201 19 C -0.218 4.218 20 C 0.021 3.979 21 C -0.062 4.062 22 O -0.569 6.569 23 Si 1.006 2.994 24 H -0.256 1.256 25 H -0.283 1.283 26 H -0.246 1.246 27 N -0.532 5.532 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.150 0.850 46 H 0.138 0.862 47 H 0.130 0.870 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.099 0.901 51 H 0.400 0.600 52 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 7.565 -1.916 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.260 2.740 3 C -0.566 4.566 4 C -0.579 4.579 5 C -0.377 4.377 6 N -0.313 5.313 7 C 0.025 3.975 8 C -0.114 4.114 9 C -0.137 4.137 10 C -0.156 4.156 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.126 4.126 14 C 0.296 3.704 15 O -0.451 6.451 16 C -0.116 4.116 17 C -0.076 4.076 18 C -0.226 4.226 19 C -0.243 4.243 20 C -0.092 4.092 21 C -0.171 4.171 22 O -0.378 6.378 23 Si 0.828 3.172 24 H -0.180 1.180 25 H -0.208 1.208 26 H -0.169 1.169 27 N -0.127 5.127 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.167 0.833 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.116 0.884 51 H 0.251 0.749 52 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.298 6.691 -1.331 7.199 hybrid contribution -0.453 -0.395 -0.641 0.879 sum 1.845 6.296 -1.972 6.850 Atomic orbital electron populations 1.26447 1.22396 1.03960 1.04890 0.78552 0.65731 0.65418 0.64284 1.26189 1.06950 1.18603 1.04841 1.26480 1.06809 1.07704 1.16894 1.27195 1.05159 0.87529 1.17775 1.47578 1.17782 1.07547 1.58370 1.20496 0.84769 1.03901 0.88289 1.20336 1.01286 0.93273 0.96497 1.21203 0.99645 0.97050 0.95831 1.21355 1.00776 1.00000 0.93446 1.21464 0.99443 0.93125 1.00362 1.21495 0.99549 0.97220 0.96313 1.21354 0.98939 0.99341 0.92920 1.20865 0.88184 0.83659 0.77672 1.90738 1.70408 1.26735 1.57240 1.20450 0.92608 0.93376 1.05191 1.19837 1.05430 0.97594 0.84743 1.20738 1.07016 0.95501 0.99317 1.20800 1.09583 1.01225 0.92668 1.19961 1.04944 0.88360 0.95984 1.24517 0.91500 1.05143 0.95953 1.86482 1.28371 1.70278 1.52718 0.84893 0.77742 0.74762 0.79767 1.18026 1.20817 1.16904 1.41797 1.45896 1.15405 1.09583 0.90286 0.91426 0.92133 0.90379 0.91392 0.90521 0.92715 0.90903 0.90032 0.87666 0.87281 0.86528 0.91010 0.87861 0.85911 0.84650 0.83797 0.83279 0.84447 0.85222 0.84529 0.84476 0.88353 0.74907 0.74154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.83 7.47 113.37 0.85 3.68 16 2 Si 1.07 -10.71 12.30 68.60 0.84 -9.87 16 3 C -0.46 4.23 8.65 113.37 0.98 5.21 16 4 C -0.47 3.09 7.57 113.37 0.86 3.95 16 5 C -0.21 1.81 4.62 127.77 0.59 2.40 16 6 N -0.58 0.57 1.96 -630.08 -1.24 -0.66 16 7 C 0.15 0.17 5.00 85.63 0.43 0.60 16 8 C -0.11 -0.42 5.46 -19.87 -0.11 -0.53 16 9 C -0.12 -1.00 9.70 22.27 0.22 -0.78 16 10 C -0.14 -0.89 10.05 22.27 0.22 -0.66 16 11 C -0.13 -0.39 10.05 22.27 0.22 -0.17 16 12 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 13 C -0.11 0.01 9.70 22.27 0.22 0.23 16 14 C 0.51 2.50 7.52 87.66 0.66 3.16 16 15 O -0.57 -8.65 15.41 -3.06 -0.05 -8.69 16 16 C -0.08 0.03 4.72 29.10 0.14 0.17 16 17 C 0.04 0.25 5.66 41.08 0.23 0.48 16 18 C -0.20 -1.98 10.76 22.14 0.24 -1.74 16 19 C -0.22 -2.22 9.37 22.14 0.21 -2.01 16 20 C 0.02 0.17 6.54 41.08 0.27 0.44 16 21 C -0.06 -0.12 3.07 71.24 0.22 0.10 16 22 O -0.57 -1.76 12.86 -148.98 -1.92 -3.67 16 23 Si 1.01 1.50 25.87 68.60 1.77 3.28 16 24 H -0.26 -0.66 7.11 99.48 0.71 0.05 16 25 H -0.28 -2.11 7.11 99.48 0.71 -1.40 16 26 H -0.25 0.18 7.11 99.48 0.71 0.89 16 27 N -0.53 -3.24 6.08 -171.13 -1.04 -4.27 16 28 H 0.08 -0.60 7.96 -2.39 -0.02 -0.62 16 29 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 30 H 0.06 -0.20 7.09 -2.39 -0.02 -0.22 16 31 H 0.08 -0.78 7.96 -2.39 -0.02 -0.80 16 32 H 0.07 -0.52 7.96 -2.38 -0.02 -0.54 16 33 H 0.08 -0.74 7.96 -2.39 -0.02 -0.76 16 34 H 0.05 -0.16 7.96 -2.39 -0.02 -0.18 16 35 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 36 H 0.08 -0.73 6.81 -2.39 -0.02 -0.74 16 37 H 0.10 -1.19 7.93 -2.39 -0.02 -1.21 16 38 H 0.11 -1.30 5.97 -2.39 -0.01 -1.31 16 39 H 0.12 -0.52 6.04 -2.39 -0.01 -0.54 16 40 H 0.07 0.44 7.30 -2.39 -0.02 0.42 16 41 H 0.10 1.29 7.87 -2.91 -0.02 1.26 16 42 H 0.12 0.58 8.06 -2.91 -0.02 0.56 16 43 H 0.14 -0.08 8.06 -2.91 -0.02 -0.11 16 44 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 45 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 46 H 0.14 -0.72 7.36 -2.39 -0.02 -0.73 16 47 H 0.13 -0.81 5.55 -2.38 -0.01 -0.82 16 48 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.14 1.11 6.22 -2.91 -0.02 1.10 16 50 H 0.10 -0.36 7.96 -2.38 -0.02 -0.38 16 51 H 0.40 -2.75 8.74 -74.06 -0.65 -3.40 16 52 H 0.42 0.75 8.96 -92.70 -0.83 -0.08 16 Total: 0.00 -25.38 421.56 5.24 -20.13 By element: Atomic # 1 Polarization: -11.11 SS G_CDS: 0.20 Total: -10.90 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.66 Total: 14.67 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -2.28 Total: -4.94 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -1.96 Total: -12.37 kcal Atomic # 14 Polarization: -9.21 SS G_CDS: 2.62 Total: -6.59 kcal Total: -25.38 5.24 -20.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_14644196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.889 kcal (2) G-P(sol) polarization free energy of solvation -25.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds