Wall clock time and date at job start Sun Mar 7 2021 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.46905 * 2 1 4 4 C 1.86297 * 109.47517 * 239.99845 * 2 1 3 5 5 C 1.86300 * 109.47160 * 119.99768 * 2 1 3 6 6 N 1.46501 * 109.47076 * 61.08482 * 5 2 1 7 7 C 1.46503 * 120.00147 * 271.00599 * 6 5 2 8 8 C 1.50697 * 109.46713 * 270.56988 * 7 6 5 9 9 C 1.38241 * 120.00247 * 269.72301 * 8 7 6 10 10 C 1.38231 * 120.00214 * 179.76846 * 9 8 7 11 11 C 1.38241 * 119.99795 * 0.50972 * 10 9 8 12 12 C 1.38227 * 119.99866 * 359.74674 * 11 10 9 13 13 C 1.38232 * 120.00229 * 90.00464 * 8 7 6 14 14 C 1.34772 * 119.99771 * 91.00175 * 6 5 2 15 15 O 1.21284 * 120.00265 * 4.78394 * 14 6 5 16 16 C 1.50703 * 120.00117 * 184.78544 * 14 6 5 17 17 C 1.53035 * 109.33455 * 111.73906 * 16 14 6 18 18 C 1.53536 * 108.56513 * 169.83336 * 17 16 14 19 19 N 1.47033 * 107.65729 * 299.04909 * 18 17 16 20 20 C 1.38929 * 118.93072 * 43.43649 * 19 18 17 21 21 C 1.31117 * 121.84665 * 347.17628 * 20 19 18 22 22 C 1.50698 * 118.54731 * 180.16757 * 21 20 19 23 23 O 1.42902 * 109.46923 * 90.65242 * 22 21 20 24 24 Si 1.86297 * 109.46922 * 330.65854 * 22 21 20 25 25 H 1.48504 * 109.46980 * 179.97438 * 24 22 21 26 26 H 1.48497 * 109.47382 * 59.99623 * 24 22 21 27 27 H 1.48499 * 109.47079 * 299.99342 * 24 22 21 28 28 H 1.09003 * 109.47568 * 300.00080 * 1 2 3 29 29 H 1.09004 * 109.47052 * 60.00219 * 1 2 3 30 30 H 1.08995 * 109.47436 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47089 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47326 * 299.99722 * 3 2 1 33 33 H 1.09000 * 109.47509 * 60.00230 * 3 2 1 34 34 H 1.09005 * 109.46948 * 306.87553 * 4 2 1 35 35 H 1.09002 * 109.46716 * 66.86788 * 4 2 1 36 36 H 1.08991 * 109.47609 * 186.86859 * 4 2 1 37 37 H 1.09007 * 109.46957 * 301.08840 * 5 2 1 38 38 H 1.08997 * 109.47440 * 181.08806 * 5 2 1 39 39 H 1.08992 * 109.47111 * 30.57284 * 7 6 5 40 40 H 1.09004 * 109.46805 * 150.57248 * 7 6 5 41 41 H 1.08007 * 119.99398 * 0.02562 * 9 8 7 42 42 H 1.08000 * 120.00095 * 180.23237 * 10 9 8 43 43 H 1.07993 * 119.99668 * 179.72489 * 11 10 9 44 44 H 1.08002 * 120.00107 * 179.97438 * 12 11 10 45 45 H 1.08008 * 119.99958 * 359.97438 * 13 8 7 46 46 H 1.09005 * 109.32826 * 352.25008 * 16 14 6 47 47 H 1.09000 * 109.62174 * 289.55436 * 17 16 14 48 48 H 1.09002 * 109.62140 * 50.10683 * 17 16 14 49 49 H 1.08999 * 109.82707 * 58.58693 * 18 17 16 50 50 H 1.09004 * 109.82417 * 179.51470 * 18 17 16 51 51 H 0.96996 * 120.56230 * 223.64447 * 19 18 17 52 52 H 1.07995 * 119.07312 * 166.94363 * 20 19 18 53 53 H 1.08993 * 109.47384 * 210.65717 * 22 21 20 54 54 H 0.96700 * 113.99907 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5210 5 6 2.4840 -0.8782 1.5212 6 7 2.0171 -2.2667 1.5082 7 6 0.7264 -2.6112 2.1096 8 6 0.9236 -2.9432 3.5662 9 6 1.1822 -4.2460 3.9495 10 6 1.3679 -4.5497 5.2852 11 6 1.2845 -3.5523 6.2388 12 6 1.0207 -2.2505 5.8561 13 6 0.8402 -1.9460 4.5199 14 6 2.7750 -3.2272 0.9430 15 8 3.8805 -2.9585 0.5228 16 6 2.2488 -4.6351 0.8330 17 6 2.0007 -4.9696 -0.6396 18 6 1.7132 -6.4732 -0.7575 19 7 2.8991 -7.1935 -0.2710 20 6 3.5240 -6.7531 0.8890 21 6 3.2496 -5.5874 1.4228 22 6 3.9747 -5.1824 2.6802 23 8 5.1662 -4.4729 2.3354 24 14 4.4194 -6.7045 3.6580 25 1 5.1346 -6.3056 4.8969 26 1 5.2974 -7.5794 2.8401 27 1 3.1813 -7.4419 4.0164 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5739 1.7565 0.0005 32 1 2.1206 2.2703 -0.8899 33 1 2.1206 2.2704 0.8900 34 1 2.0238 -1.8643 -1.5847 35 1 2.2245 -0.2983 -2.4068 36 1 3.5670 -0.9859 -1.4617 37 1 2.1047 -0.3756 2.4111 38 1 3.5738 -0.8613 1.5310 39 1 0.0457 -1.7648 2.0187 40 1 0.3042 -3.4740 1.5942 41 1 1.2433 -5.0259 3.2047 42 1 1.5737 -5.5668 5.5842 43 1 1.4252 -3.7904 7.2827 44 1 0.9551 -1.4714 6.6011 45 1 0.6340 -0.9288 4.2209 46 1 1.3099 -4.7132 1.3813 47 1 1.1436 -4.4035 -1.0042 48 1 2.8847 -4.7189 -1.2259 49 1 0.8473 -6.7330 -0.1485 50 1 1.5246 -6.7329 -1.7992 51 1 3.2417 -7.9621 -0.7535 52 1 4.2536 -7.3903 1.3664 53 1 3.3303 -4.5404 3.2806 54 1 5.6848 -4.1812 3.0977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_15608500.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:15:07 Heat of formation + Delta-G solvation = -41.410576 kcal Electronic energy + Delta-G solvation = -33605.930911 eV Core-core repulsion = 29667.008772 eV Total energy + Delta-G solvation = -3938.922139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.194 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.61810 -39.96791 -39.12212 -37.41002 -36.48866 -33.59770 -32.79492 -32.36250 -31.74957 -29.57104 -28.53029 -28.36035 -28.26341 -27.09352 -26.47846 -25.05839 -23.43099 -23.07222 -22.48214 -20.37740 -19.01131 -18.55396 -18.33084 -17.93872 -17.60216 -16.88176 -16.73447 -16.35790 -15.78631 -15.57440 -15.28403 -15.12850 -14.85430 -14.43008 -14.32730 -14.19775 -14.10931 -14.07168 -13.99594 -13.85494 -13.84348 -13.71421 -13.40775 -13.37780 -13.22875 -13.19292 -12.98268 -12.90559 -12.83883 -12.77120 -12.32973 -12.20880 -12.10463 -11.85499 -11.79106 -11.56422 -11.45455 -11.21116 -10.81889 -10.70212 -10.35570 -10.12534 -9.73462 -9.64316 -9.03415 -8.37953 0.40123 0.52837 1.15216 1.27524 1.38339 1.44492 1.66564 1.85028 1.92373 2.00625 2.04089 2.39957 2.68730 2.72853 2.97192 3.60850 3.76789 3.86382 3.88074 3.95883 4.02626 4.10501 4.21281 4.27376 4.30516 4.37068 4.41486 4.57202 4.57901 4.62802 4.66273 4.73251 4.74637 4.77962 4.79290 4.82101 4.82317 4.83842 4.85611 4.91580 4.94409 5.12232 5.12774 5.17858 5.23150 5.26491 5.53468 5.55466 5.59189 5.59955 5.62037 5.66991 5.70372 5.77976 6.14058 6.38117 6.56715 6.88138 6.95936 7.51412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 1.056 2.944 3 C -0.461 4.461 4 C -0.460 4.460 5 C -0.189 4.189 6 N -0.590 5.590 7 C 0.132 3.868 8 C -0.114 4.114 9 C -0.118 4.118 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.519 3.481 15 O -0.547 6.547 16 C -0.046 4.046 17 C -0.129 4.129 18 C 0.122 3.878 19 N -0.750 5.750 20 C 0.138 3.862 21 C -0.243 4.243 22 C -0.066 4.066 23 O -0.553 6.553 24 Si 0.951 3.049 25 H -0.266 1.266 26 H -0.264 1.264 27 H -0.240 1.240 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.049 0.951 49 H 0.078 0.922 50 H 0.100 0.900 51 H 0.410 0.590 52 H 0.132 0.868 53 H 0.067 0.933 54 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -0.746 1.501 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.248 2.752 3 C -0.569 4.569 4 C -0.564 4.564 5 C -0.356 4.356 6 N -0.322 5.322 7 C 0.010 3.990 8 C -0.116 4.116 9 C -0.136 4.136 10 C -0.155 4.155 11 C -0.145 4.145 12 C -0.149 4.149 13 C -0.128 4.128 14 C 0.307 3.693 15 O -0.423 6.423 16 C -0.067 4.067 17 C -0.168 4.168 18 C -0.002 4.002 19 N -0.380 5.380 20 C 0.015 3.985 21 C -0.254 4.254 22 C -0.177 4.177 23 O -0.359 6.359 24 Si 0.776 3.224 25 H -0.191 1.191 26 H -0.189 1.189 27 H -0.163 1.163 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.156 0.844 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.068 0.932 49 H 0.096 0.904 50 H 0.118 0.882 51 H 0.246 0.754 52 H 0.149 0.851 53 H 0.085 0.915 54 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.776 -1.405 1.103 7.007 hybrid contribution 1.100 0.163 0.389 1.178 sum -5.676 -1.242 1.492 5.999 Atomic orbital electron populations 1.26072 1.18740 1.05197 1.05294 0.78759 0.67661 0.64647 0.64165 1.26242 1.05929 1.19689 1.04998 1.26374 1.05154 1.07803 1.17091 1.26743 1.04713 0.87356 1.16817 1.47678 1.20289 1.07063 1.57196 1.20929 0.85117 1.04295 0.88665 1.20387 1.01048 0.93685 0.96439 1.21343 0.99104 0.96688 0.96512 1.21371 1.00667 1.00028 0.93391 1.21434 0.99365 0.93437 1.00251 1.21420 0.99805 0.97024 0.96701 1.21320 0.99082 0.99643 0.92792 1.20597 0.84400 0.86820 0.77457 1.90688 1.20487 1.82293 1.48863 1.19967 0.98674 0.90223 0.97877 1.21852 1.02620 0.98297 0.93991 1.21721 0.87685 0.89753 1.01045 1.44604 1.32072 1.35221 1.26152 1.20654 0.94506 0.95175 0.88138 1.19519 1.07635 0.95533 1.02690 1.24763 0.88559 1.04364 0.99968 1.86729 1.36191 1.76706 1.36246 0.85796 0.81199 0.77747 0.77708 1.19112 1.18940 1.16294 0.89806 0.90992 0.90341 0.92202 0.90989 0.90213 0.92356 0.91511 0.93564 0.88623 0.91718 0.86461 0.87529 0.85198 0.85378 0.85101 0.84857 0.84386 0.87489 0.88439 0.93169 0.90413 0.88160 0.75413 0.85112 0.91494 0.77946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 2.78 7.93 113.37 0.90 3.68 16 2 Si 1.06 -3.17 12.39 68.60 0.85 -2.32 16 3 C -0.46 0.62 8.65 113.37 0.98 1.60 16 4 C -0.46 -1.77 8.65 113.37 0.98 -0.79 16 5 C -0.19 -0.08 4.68 127.77 0.60 0.51 16 6 N -0.59 -0.55 1.96 -630.08 -1.23 -1.78 16 7 C 0.13 -0.57 5.11 85.63 0.44 -0.14 16 8 C -0.11 0.16 5.46 -19.87 -0.11 0.06 16 9 C -0.12 0.03 6.97 22.27 0.16 0.19 16 10 C -0.14 -0.02 10.05 22.27 0.22 0.20 16 11 C -0.13 0.02 10.05 22.27 0.22 0.24 16 12 C -0.13 0.11 10.05 22.27 0.22 0.34 16 13 C -0.11 0.19 9.70 22.27 0.22 0.41 16 14 C 0.52 3.52 5.16 87.66 0.45 3.97 16 15 O -0.55 -8.79 14.82 13.64 0.20 -8.59 16 16 C -0.05 -0.12 1.95 -12.43 -0.02 -0.15 16 17 C -0.13 -0.06 5.46 30.79 0.17 0.10 16 18 C 0.12 -0.46 7.16 86.46 0.62 0.15 16 19 N -0.75 0.51 5.83 -345.89 -2.02 -1.51 16 20 C 0.14 0.51 9.58 83.41 0.80 1.31 16 21 C -0.24 -1.27 4.21 -16.76 -0.07 -1.35 16 22 C -0.07 -0.36 1.86 71.24 0.13 -0.23 16 23 O -0.55 -5.67 11.26 -132.29 -1.49 -7.16 16 24 Si 0.95 3.01 25.98 68.60 1.78 4.80 16 25 H -0.27 -1.14 7.11 99.48 0.71 -0.43 16 26 H -0.26 -1.32 6.36 99.48 0.63 -0.68 16 27 H -0.24 -0.39 7.11 99.48 0.71 0.32 16 28 H 0.08 -0.70 7.96 -2.39 -0.02 -0.72 16 29 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 30 H 0.08 -0.58 7.32 -2.39 -0.02 -0.60 16 31 H 0.06 0.06 7.96 -2.38 -0.02 0.04 16 32 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.06 0.26 7.96 -2.38 -0.02 0.24 16 35 H 0.07 0.16 7.96 -2.39 -0.02 0.14 16 36 H 0.04 0.43 7.96 -2.39 -0.02 0.42 16 37 H 0.10 -0.37 7.89 -2.38 -0.02 -0.38 16 38 H 0.06 0.43 7.15 -2.39 -0.02 0.42 16 39 H 0.12 -1.06 6.55 -2.39 -0.02 -1.07 16 40 H 0.11 -0.79 5.77 -2.38 -0.01 -0.80 16 41 H 0.13 -0.22 5.25 -2.91 -0.02 -0.23 16 42 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 43 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 44 H 0.13 -0.52 8.06 -2.91 -0.02 -0.55 16 45 H 0.14 -0.81 8.05 -2.91 -0.02 -0.83 16 46 H 0.11 -0.25 3.59 -2.38 -0.01 -0.26 16 47 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 48 H 0.05 0.37 8.04 -2.39 -0.02 0.35 16 49 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 50 H 0.10 -0.73 8.14 -2.38 -0.02 -0.75 16 51 H 0.41 -1.75 8.96 -92.71 -0.83 -2.58 16 52 H 0.13 0.39 4.84 -2.91 -0.01 0.38 16 53 H 0.07 0.32 4.82 -2.39 -0.01 0.30 16 54 H 0.37 1.29 8.74 -74.06 -0.65 0.64 16 Total: 0.00 -20.68 414.74 5.12 -15.56 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: 0.11 Total: -9.11 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.91 Total: 10.11 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -3.25 Total: -3.29 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.29 Total: -15.74 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: 2.63 Total: 2.47 kcal Total: -20.68 5.12 -15.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_15608500.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.849 kcal (2) G-P(sol) polarization free energy of solvation -20.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds