Wall clock time and date at job start Sun Mar 7 2021 14:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86291 * 1 3 3 C 1.86295 * 109.47241 * 2 1 4 4 C 1.86303 * 109.47258 * 239.99861 * 2 1 3 5 5 C 1.86300 * 109.47100 * 119.99801 * 2 1 3 6 6 N 1.46497 * 109.47168 * 54.99356 * 5 2 1 7 7 C 1.46507 * 120.00057 * 275.16026 * 6 5 2 8 8 C 1.50697 * 109.47079 * 270.00251 * 7 6 5 9 9 C 1.38240 * 119.99547 * 269.72494 * 8 7 6 10 10 C 1.38236 * 119.99529 * 179.77015 * 9 8 7 11 11 C 1.38229 * 120.00330 * 0.49957 * 10 9 8 12 12 C 1.38236 * 119.99735 * 359.75386 * 11 10 9 13 13 C 1.38229 * 120.00446 * 89.99465 * 8 7 6 14 14 C 1.34778 * 120.00395 * 95.15831 * 6 5 2 15 15 O 1.21276 * 120.00131 * 185.30424 * 14 6 5 16 16 C 1.50703 * 119.99615 * 5.30724 * 14 6 5 17 17 O 1.42905 * 109.46677 * 175.00655 * 16 14 6 18 18 C 1.35896 * 116.99540 * 180.02562 * 17 16 14 19 19 C 1.38717 * 120.06018 * 359.95098 * 18 17 16 20 20 C 1.38168 * 119.94554 * 179.97438 * 19 18 17 21 21 C 1.38238 * 120.05621 * 0.03192 * 20 19 18 22 22 C 1.38286 * 120.11185 * 0.02562 * 21 20 19 23 23 C 1.38123 * 120.05762 * 359.95749 * 22 21 20 24 24 C 1.50701 * 120.02680 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.46888 * 105.00496 * 24 23 22 26 26 Si 1.86294 * 109.47605 * 345.00604 * 24 23 22 27 27 H 1.48501 * 109.47208 * 59.99720 * 26 24 23 28 28 H 1.48498 * 109.47508 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.46820 * 299.99952 * 26 24 23 30 30 H 1.09005 * 109.47279 * 300.00321 * 1 2 3 31 31 H 1.09001 * 109.47169 * 60.00225 * 1 2 3 32 32 H 1.09008 * 109.47385 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47521 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47552 * 300.00012 * 3 2 1 35 35 H 1.09005 * 109.47246 * 59.99658 * 3 2 1 36 36 H 1.08998 * 109.47144 * 304.94673 * 4 2 1 37 37 H 1.08998 * 109.46870 * 64.94519 * 4 2 1 38 38 H 1.08996 * 109.46943 * 184.94237 * 4 2 1 39 39 H 1.08998 * 109.47520 * 294.99227 * 5 2 1 40 40 H 1.09008 * 109.47284 * 174.98879 * 5 2 1 41 41 H 1.09001 * 109.46806 * 30.00226 * 7 6 5 42 42 H 1.09003 * 109.47172 * 149.99770 * 7 6 5 43 43 H 1.07997 * 120.00305 * 359.97438 * 9 8 7 44 44 H 1.08002 * 119.99481 * 180.22970 * 10 9 8 45 45 H 1.07999 * 120.00513 * 179.72409 * 11 10 9 46 46 H 1.08000 * 119.99810 * 179.97438 * 12 11 10 47 47 H 1.08005 * 119.99679 * 0.02562 * 13 8 7 48 48 H 1.09001 * 109.47217 * 55.00657 * 16 14 6 49 49 H 1.09000 * 109.46779 * 295.00085 * 16 14 6 50 50 H 1.08004 * 120.02154 * 0.04902 * 19 18 17 51 51 H 1.07994 * 119.96674 * 180.30506 * 20 19 18 52 52 H 1.08000 * 119.94582 * 179.97438 * 21 20 19 53 53 H 1.08000 * 119.97072 * 179.97438 * 22 21 20 54 54 H 1.09001 * 109.46789 * 224.99848 * 24 23 22 55 55 H 0.96702 * 114.00250 * 59.99466 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8782 1.5212 6 7 1.8996 -2.2202 1.5830 7 6 0.5752 -2.4158 2.1780 8 6 0.7223 -2.6860 3.6533 9 6 0.8575 -3.9844 4.1080 10 6 0.9972 -4.2319 5.4608 11 6 0.9912 -3.1819 6.3598 12 6 0.8506 -1.8839 5.9055 13 6 0.7163 -1.6360 4.5523 14 6 2.5804 -3.2749 1.0925 15 8 2.0590 -4.3692 1.0557 16 6 3.9897 -3.0943 0.5899 17 8 4.5346 -4.3662 0.2327 18 6 5.8077 -4.3804 -0.2424 19 6 6.5175 -3.1948 -0.3633 20 6 7.8120 -3.2121 -0.8460 21 6 8.3996 -4.4095 -1.2091 22 6 7.6938 -5.5927 -1.0906 23 6 6.3996 -5.5809 -0.6082 24 6 5.6311 -6.8708 -0.4789 25 8 5.5640 -7.2493 0.8974 26 14 6.4932 -8.2073 -1.4490 27 1 7.8679 -8.3948 -0.9196 28 1 5.7364 -9.4785 -1.3211 29 1 6.5630 -7.8139 -2.8794 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.5739 1.7565 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1205 2.2703 0.8900 36 1 2.0501 -1.8771 -1.5665 37 1 2.1948 -0.3158 -2.4089 38 1 3.5703 -0.9555 -1.4779 39 1 2.1957 -0.3152 2.4089 40 1 3.5703 -0.9566 1.4774 41 1 -0.0253 -1.5181 2.0311 42 1 0.0840 -3.2637 1.7005 43 1 0.8574 -4.8052 3.4061 44 1 1.1066 -5.2460 5.8157 45 1 1.0958 -3.3755 7.4171 46 1 0.8455 -1.0635 6.6079 47 1 0.6058 -0.6219 4.1973 48 1 4.5999 -2.6445 1.3730 49 1 3.9829 -2.4435 -0.2845 50 1 6.0590 -2.2591 -0.0791 51 1 8.3667 -2.2898 -0.9357 52 1 9.4114 -4.4209 -1.5866 53 1 8.1549 -6.5269 -1.3753 54 1 4.6221 -6.7331 -0.8674 55 1 5.1266 -6.5985 1.4635 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_2989392.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:15:43 Heat of formation + Delta-G solvation = -78.388586 kcal Electronic energy + Delta-G solvation = -34845.450474 eV Core-core repulsion = 30550.753905 eV Total energy + Delta-G solvation = -4294.696569 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.182 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.77323 -40.97112 -39.85470 -38.50540 -37.49182 -36.73366 -33.19219 -32.70148 -31.82576 -31.26948 -29.89100 -29.53200 -28.41194 -28.25287 -27.72452 -26.67732 -26.32292 -23.63367 -23.47232 -22.61424 -22.36576 -20.35094 -19.54159 -18.38771 -18.01864 -17.93022 -17.63195 -17.38646 -16.78776 -16.75893 -16.38238 -16.00828 -15.80237 -15.57689 -15.45613 -15.23597 -14.73325 -14.51941 -14.36210 -14.29034 -14.14681 -14.12460 -14.02417 -13.85738 -13.77148 -13.53669 -13.43811 -13.40356 -13.11421 -13.03694 -12.97431 -12.82061 -12.74630 -12.64026 -12.32276 -12.25807 -12.08354 -11.89000 -11.85115 -11.63829 -11.22576 -11.08480 -10.99850 -10.77327 -10.75013 -9.98235 -9.86521 -9.76989 -9.28402 -9.25916 0.20269 0.28732 0.35882 0.45698 1.15478 1.33150 1.40854 1.44589 1.48020 1.80595 1.86797 1.91137 2.00892 2.45876 2.64621 2.66944 2.90896 3.32966 3.58868 3.78686 3.80026 3.80769 3.89743 3.94528 3.97733 4.08206 4.11671 4.21647 4.23780 4.25764 4.28136 4.29456 4.48232 4.55492 4.62711 4.66734 4.72954 4.73946 4.74711 4.82404 4.84932 4.89467 4.92671 4.93200 4.97188 5.05938 5.11650 5.22714 5.33307 5.35550 5.49000 5.51929 5.55075 5.59195 5.61786 5.64459 5.69740 5.71628 6.06965 6.15330 6.30059 6.51631 7.02551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.471 4.471 2 Si 1.069 2.931 3 C -0.456 4.456 4 C -0.477 4.477 5 C -0.213 4.213 6 N -0.575 5.575 7 C 0.148 3.852 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.138 4.138 11 C -0.125 4.125 12 C -0.128 4.128 13 C -0.106 4.106 14 C 0.509 3.491 15 O -0.562 6.562 16 C 0.030 3.970 17 O -0.313 6.313 18 C 0.123 3.877 19 C -0.208 4.208 20 C -0.075 4.075 21 C -0.153 4.153 22 C -0.099 4.099 23 C -0.163 4.163 24 C -0.094 4.094 25 O -0.552 6.552 26 Si 1.041 2.959 27 H -0.253 1.253 28 H -0.277 1.277 29 H -0.237 1.237 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.152 0.848 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.157 0.843 51 H 0.158 0.842 52 H 0.150 0.850 53 H 0.136 0.864 54 H 0.067 0.933 55 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 10.835 -0.033 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.260 2.740 3 C -0.564 4.564 4 C -0.582 4.582 5 C -0.380 4.380 6 N -0.308 5.308 7 C 0.027 3.973 8 C -0.116 4.116 9 C -0.137 4.137 10 C -0.156 4.156 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.124 4.124 14 C 0.297 3.703 15 O -0.440 6.440 16 C -0.048 4.048 17 O -0.226 6.226 18 C 0.078 3.922 19 C -0.227 4.227 20 C -0.093 4.093 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.164 4.164 24 C -0.201 4.201 25 O -0.358 6.358 26 Si 0.861 3.139 27 H -0.177 1.177 28 H -0.203 1.203 29 H -0.159 1.159 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.141 0.859 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.169 0.831 48 H 0.135 0.865 49 H 0.138 0.862 50 H 0.175 0.825 51 H 0.175 0.825 52 H 0.167 0.833 53 H 0.154 0.846 54 H 0.085 0.915 55 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.077 8.931 -0.706 9.197 hybrid contribution -0.826 0.480 0.665 1.163 sum 1.252 9.411 -0.041 9.494 Atomic orbital electron populations 1.26428 1.22021 1.04143 1.05092 0.78563 0.66097 0.65564 0.63756 1.26165 1.07005 1.18280 1.04999 1.26546 1.06643 1.07719 1.17310 1.27272 1.04912 0.87414 1.18411 1.47468 1.18008 1.07205 1.58089 1.20577 0.83999 1.04470 0.88283 1.20316 1.01626 0.93326 0.96375 1.21235 0.99532 0.97108 0.95862 1.21364 1.00755 1.00020 0.93486 1.21476 0.99316 0.93187 1.00384 1.21504 0.99547 0.97197 0.96378 1.21373 0.98744 0.99421 0.92867 1.20328 0.87503 0.84261 0.78225 1.90735 1.70057 1.26570 1.56677 1.22926 0.92686 0.85719 1.03427 1.86072 1.26297 1.31519 1.78730 1.18989 0.83482 0.94413 0.95337 1.21612 0.97093 0.97193 1.06775 1.21403 0.93917 0.99280 0.94667 1.21408 1.01520 0.91907 1.02243 1.21181 0.92501 1.00131 0.97875 1.19740 0.96288 0.93857 1.06493 1.25410 1.03762 1.02298 0.88638 1.86616 1.82590 1.48736 1.17875 0.84150 0.78085 0.74491 0.77186 1.17687 1.20276 1.15941 0.90007 0.91351 0.91976 0.90278 0.91322 0.90315 0.92926 0.90798 0.90330 0.86894 0.87498 0.85966 0.90514 0.87582 0.85875 0.84727 0.83806 0.83071 0.86530 0.86242 0.82509 0.82461 0.83261 0.84632 0.91463 0.78045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.50 7.47 113.37 0.85 4.35 16 2 Si 1.07 -11.98 12.30 68.60 0.84 -11.14 16 3 C -0.46 4.90 8.65 113.37 0.98 5.88 16 4 C -0.48 3.06 7.57 113.37 0.86 3.92 16 5 C -0.21 2.21 4.62 127.77 0.59 2.80 16 6 N -0.58 1.42 1.96 -630.07 -1.24 0.19 16 7 C 0.15 -0.12 5.00 85.63 0.43 0.31 16 8 C -0.12 -0.22 5.46 -19.87 -0.11 -0.33 16 9 C -0.12 -0.79 9.70 22.27 0.22 -0.58 16 10 C -0.14 -0.71 10.05 22.27 0.22 -0.49 16 11 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 12 C -0.13 0.09 10.05 22.27 0.22 0.31 16 13 C -0.11 0.19 9.70 22.27 0.22 0.40 16 14 C 0.51 2.08 7.60 87.66 0.67 2.75 16 15 O -0.56 -7.79 15.87 15.97 0.25 -7.53 16 16 C 0.03 -0.02 3.70 71.24 0.26 0.24 16 17 O -0.31 -2.07 8.58 -73.39 -0.63 -2.70 16 18 C 0.12 0.61 6.62 22.51 0.15 0.76 16 19 C -0.21 0.21 9.04 22.37 0.20 0.41 16 20 C -0.07 0.18 10.04 22.25 0.22 0.40 16 21 C -0.15 0.03 10.04 22.28 0.22 0.25 16 22 C -0.10 -0.38 8.66 22.25 0.19 -0.19 16 23 C -0.16 -1.11 5.28 -19.77 -0.10 -1.21 16 24 C -0.09 -0.80 2.33 71.24 0.17 -0.63 16 25 O -0.55 -6.19 12.65 -148.98 -1.89 -8.07 16 26 Si 1.04 5.74 25.75 68.60 1.77 7.51 16 27 H -0.25 -1.32 6.73 99.48 0.67 -0.65 16 28 H -0.28 -2.38 7.11 99.48 0.71 -1.68 16 29 H -0.24 -0.75 7.11 99.48 0.71 -0.04 16 30 H 0.08 -0.77 7.96 -2.38 -0.02 -0.79 16 31 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 32 H 0.06 -0.31 7.09 -2.38 -0.02 -0.32 16 33 H 0.08 -0.92 7.96 -2.39 -0.02 -0.94 16 34 H 0.07 -0.61 7.96 -2.38 -0.02 -0.63 16 35 H 0.08 -0.90 7.96 -2.38 -0.02 -0.91 16 36 H 0.05 -0.11 7.96 -2.39 -0.02 -0.13 16 37 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 38 H 0.08 -0.68 6.81 -2.39 -0.02 -0.70 16 39 H 0.11 -1.53 7.93 -2.39 -0.02 -1.55 16 40 H 0.11 -1.48 5.97 -2.38 -0.01 -1.49 16 41 H 0.12 -0.83 6.04 -2.39 -0.01 -0.84 16 42 H 0.08 0.29 7.30 -2.39 -0.02 0.28 16 43 H 0.11 1.08 7.87 -2.91 -0.02 1.06 16 44 H 0.12 0.43 8.06 -2.91 -0.02 0.41 16 45 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 46 H 0.14 -0.77 8.06 -2.91 -0.02 -0.79 16 47 H 0.15 -1.27 8.06 -2.91 -0.02 -1.29 16 48 H 0.12 -0.71 6.88 -2.39 -0.02 -0.73 16 49 H 0.12 -0.69 5.07 -2.39 -0.01 -0.70 16 50 H 0.16 -1.22 6.30 -2.91 -0.02 -1.24 16 51 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 52 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 53 H 0.14 0.24 4.89 -2.91 -0.01 0.23 16 54 H 0.07 0.63 7.83 -2.39 -0.02 0.61 16 55 H 0.37 3.35 8.60 -74.06 -0.64 2.71 16 Total: 0.00 -22.51 442.33 6.77 -15.74 By element: Atomic # 1 Polarization: -14.28 SS G_CDS: 0.97 Total: -13.31 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 6.68 Total: 19.32 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -1.24 Total: 0.19 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -2.26 Total: -18.30 kcal Atomic # 14 Polarization: -6.24 SS G_CDS: 2.61 Total: -3.64 kcal Total: -22.51 6.77 -15.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_2989392.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.648 kcal (2) G-P(sol) polarization free energy of solvation -22.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds