Wall clock time and date at job start Sun Mar 7 2021 14:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86303 * 109.47180 * 2 1 4 4 C 1.86296 * 109.46977 * 240.00041 * 2 1 3 5 5 C 1.86302 * 109.47088 * 119.99947 * 2 1 3 6 6 N 1.46504 * 109.46809 * 54.98767 * 5 2 1 7 7 C 1.46500 * 120.00162 * 275.15785 * 6 5 2 8 8 C 1.50691 * 109.47342 * 270.00431 * 7 6 5 9 9 C 1.38245 * 120.00195 * 269.72958 * 8 7 6 10 10 C 1.38234 * 120.00078 * 179.76921 * 9 8 7 11 11 C 1.38234 * 120.00059 * 0.49799 * 10 9 8 12 12 C 1.38240 * 119.99944 * 359.75291 * 11 10 9 13 13 C 1.38232 * 120.00461 * 89.99818 * 8 7 6 14 14 C 1.34781 * 119.99550 * 95.16215 * 6 5 2 15 15 O 1.21286 * 119.99396 * 185.29763 * 14 6 5 16 16 C 1.50698 * 120.00373 * 5.30480 * 14 6 5 17 17 O 1.42893 * 109.47207 * 175.00317 * 16 14 6 18 18 C 1.35904 * 117.00175 * 179.97438 * 17 16 14 19 19 C 1.38717 * 120.05217 * 359.73340 * 18 17 16 20 20 C 1.38165 * 119.94068 * 179.72222 * 19 18 17 21 21 C 1.38244 * 120.05699 * 0.57069 * 20 19 18 22 22 C 1.38285 * 120.10984 * 359.67835 * 21 20 19 23 23 C 1.50701 * 119.97412 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47427 * 245.02472 * 23 22 21 25 25 Si 1.86304 * 109.46949 * 5.02520 * 23 22 21 26 26 H 1.48503 * 109.46946 * 300.00031 * 25 23 22 27 27 H 1.48504 * 109.47012 * 59.99638 * 25 23 22 28 28 H 1.48494 * 109.47173 * 180.02562 * 25 23 22 29 29 C 1.38122 * 120.05725 * 0.04562 * 22 21 20 30 30 H 1.09004 * 109.46781 * 300.00170 * 1 2 3 31 31 H 1.08996 * 109.46701 * 59.99801 * 1 2 3 32 32 H 1.08993 * 109.47540 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46917 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47040 * 299.99716 * 3 2 1 35 35 H 1.08998 * 109.47196 * 59.99821 * 3 2 1 36 36 H 1.09006 * 109.47104 * 304.93986 * 4 2 1 37 37 H 1.08998 * 109.47265 * 64.94454 * 4 2 1 38 38 H 1.09004 * 109.47057 * 184.94635 * 4 2 1 39 39 H 1.08995 * 109.46994 * 294.99258 * 5 2 1 40 40 H 1.09001 * 109.47353 * 174.98734 * 5 2 1 41 41 H 1.09001 * 109.46912 * 30.00643 * 7 6 5 42 42 H 1.09007 * 109.46617 * 150.00322 * 7 6 5 43 43 H 1.08001 * 119.99104 * 359.97438 * 9 8 7 44 44 H 1.07994 * 119.99810 * 180.23342 * 10 9 8 45 45 H 1.07997 * 119.99937 * 179.72220 * 11 10 9 46 46 H 1.08000 * 120.00060 * 179.97438 * 12 11 10 47 47 H 1.08006 * 119.99933 * 0.02562 * 13 8 7 48 48 H 1.09003 * 109.47217 * 55.00285 * 16 14 6 49 49 H 1.09003 * 109.47061 * 295.00800 * 16 14 6 50 50 H 1.08004 * 120.02719 * 359.97438 * 19 18 17 51 51 H 1.07999 * 119.97126 * 180.27733 * 20 19 18 52 52 H 1.07991 * 119.94728 * 179.70731 * 21 20 19 53 53 H 1.08997 * 109.47140 * 125.02048 * 23 22 21 54 54 H 0.96690 * 114.00196 * 179.97438 * 24 23 22 55 55 H 1.08004 * 120.03106 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.8996 -2.2202 1.5830 7 6 0.5753 -2.4158 2.1780 8 6 0.7223 -2.6860 3.6532 9 6 0.8575 -3.9844 4.1080 10 6 0.9972 -4.2319 5.4608 11 6 0.9913 -3.1819 6.3598 12 6 0.8508 -1.8838 5.9055 13 6 0.7163 -1.6360 4.5522 14 6 2.5805 -3.2749 1.0924 15 8 2.0589 -4.3693 1.0557 16 6 3.9896 -3.0945 0.5898 17 8 4.5345 -4.3662 0.2327 18 6 5.8074 -4.3805 -0.2434 19 6 6.5152 -3.1942 -0.3695 20 6 7.8111 -3.2120 -0.8484 21 6 8.3983 -4.4093 -1.2128 22 6 7.6929 -5.5927 -1.0929 23 6 8.3361 -6.8962 -1.4905 24 8 7.6404 -7.4489 -2.6096 25 14 10.1157 -6.5950 -1.9525 26 1 10.1772 -5.6448 -3.0920 27 1 10.8386 -6.0206 -0.7894 28 1 10.7494 -7.8794 -2.3449 29 6 6.3991 -5.5809 -0.6093 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5741 1.7564 -0.0005 34 1 2.1208 2.2703 -0.8900 35 1 2.1207 2.2703 0.8899 36 1 2.0502 -1.8772 -1.5665 37 1 2.1948 -0.3158 -2.4089 38 1 3.5704 -0.9556 -1.4779 39 1 2.1958 -0.3152 2.4088 40 1 3.5703 -0.9567 1.4774 41 1 -0.0252 -1.5180 2.0311 42 1 0.0840 -3.2636 1.7005 43 1 0.8574 -4.8051 3.4060 44 1 1.1066 -5.2460 5.8157 45 1 1.0959 -3.3756 7.4171 46 1 0.8457 -1.0634 6.6079 47 1 0.6059 -0.6219 4.1974 48 1 4.6000 -2.6446 1.3730 49 1 3.9830 -2.4435 -0.2845 50 1 6.0551 -2.2579 -0.0898 51 1 8.3642 -2.2891 -0.9425 52 1 9.4096 -4.4206 -1.5913 53 1 8.2910 -7.5936 -0.6541 54 1 8.0011 -8.2904 -2.9205 55 1 5.8485 -6.5053 -0.5162 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17626732_4860298.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:16:44 Heat of formation + Delta-G solvation = -75.550013 kcal Electronic energy + Delta-G solvation = -33999.384402 eV Core-core repulsion = 29704.810923 eV Total energy + Delta-G solvation = -4294.573479 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.182 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.70798 -40.91789 -39.87817 -38.88836 -37.32106 -36.74480 -33.17898 -32.60969 -31.83063 -31.64048 -29.81948 -29.52475 -28.40701 -28.24156 -27.72506 -26.90833 -26.14110 -23.71660 -23.47687 -22.79210 -22.03617 -20.34005 -19.27593 -18.50387 -18.04473 -17.93567 -17.68646 -17.45199 -17.19585 -16.66336 -16.38733 -15.93378 -15.86513 -15.62551 -15.51119 -14.93051 -14.60702 -14.47604 -14.43614 -14.32760 -14.17481 -14.12573 -14.03882 -13.85957 -13.76605 -13.58937 -13.50806 -13.40866 -13.31745 -13.09975 -13.03470 -12.96829 -12.81243 -12.50762 -12.32859 -12.18383 -12.05795 -11.90466 -11.89356 -11.67456 -11.64021 -11.04837 -10.76900 -10.75140 -10.38870 -9.92824 -9.87005 -9.77547 -9.32555 -9.28323 0.16926 0.28165 0.34650 0.45195 1.13362 1.31648 1.42693 1.48138 1.53099 1.80341 1.86847 1.90119 2.02274 2.46591 2.60670 2.64891 2.90364 3.32006 3.45266 3.73880 3.79407 3.82495 3.88827 3.91001 3.96198 4.04674 4.11237 4.20708 4.22504 4.24217 4.25442 4.28757 4.47041 4.54899 4.62803 4.66249 4.72376 4.73838 4.74384 4.82715 4.85597 4.90143 4.94392 4.94645 4.97536 5.05413 5.11167 5.18895 5.30922 5.33871 5.41732 5.51468 5.55223 5.58544 5.61307 5.64722 5.64902 5.72442 6.06590 6.14612 6.32078 6.78725 7.01128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.470 4.470 2 Si 1.069 2.931 3 C -0.454 4.454 4 C -0.479 4.479 5 C -0.214 4.214 6 N -0.575 5.575 7 C 0.148 3.852 8 C -0.116 4.116 9 C -0.121 4.121 10 C -0.139 4.139 11 C -0.125 4.125 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.508 3.492 15 O -0.566 6.566 16 C 0.030 3.970 17 O -0.319 6.319 18 C 0.113 3.887 19 C -0.206 4.206 20 C -0.069 4.069 21 C -0.173 4.173 22 C -0.048 4.048 23 C -0.095 4.095 24 O -0.564 6.564 25 Si 0.993 3.007 26 H -0.264 1.264 27 H -0.253 1.253 28 H -0.256 1.256 29 C -0.145 4.145 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.146 0.854 47 H 0.153 0.847 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.161 0.839 51 H 0.163 0.837 52 H 0.135 0.865 53 H 0.089 0.911 54 H 0.398 0.602 55 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 8.483 1.827 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.576 4.576 2 Si 1.260 2.740 3 C -0.563 4.563 4 C -0.584 4.584 5 C -0.381 4.381 6 N -0.307 5.307 7 C 0.026 3.974 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.157 4.157 11 C -0.143 4.143 12 C -0.145 4.145 13 C -0.123 4.123 14 C 0.296 3.704 15 O -0.445 6.445 16 C -0.048 4.048 17 O -0.232 6.232 18 C 0.068 3.932 19 C -0.224 4.224 20 C -0.087 4.087 21 C -0.191 4.191 22 C -0.048 4.048 23 C -0.204 4.204 24 O -0.374 6.374 25 Si 0.816 3.184 26 H -0.189 1.189 27 H -0.177 1.177 28 H -0.181 1.181 29 C -0.164 4.164 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.170 0.830 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.178 0.822 51 H 0.181 0.819 52 H 0.153 0.847 53 H 0.107 0.893 54 H 0.248 0.752 55 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.176 8.393 1.696 9.133 hybrid contribution -0.439 -1.242 0.027 1.318 sum 2.737 7.151 1.723 7.848 Atomic orbital electron populations 1.26416 1.21927 1.04131 1.05160 0.78574 0.66177 0.65643 0.63612 1.26140 1.07020 1.18074 1.05055 1.26580 1.06656 1.07686 1.17491 1.27295 1.04978 0.87298 1.18528 1.47479 1.18021 1.07200 1.58028 1.20590 0.83967 1.04505 0.88326 1.20322 1.01678 0.93361 0.96374 1.21241 0.99650 0.97124 0.95923 1.21363 1.00803 1.00081 0.93423 1.21485 0.99265 0.93161 1.00392 1.21516 0.99458 0.97212 0.96350 1.21379 0.98665 0.99398 0.92864 1.20365 0.87554 0.84258 0.78207 1.90729 1.70122 1.26780 1.56826 1.22937 0.92701 0.85683 1.03474 1.86119 1.26599 1.31707 1.78820 1.19229 0.83545 0.95174 0.95245 1.21614 0.96813 0.97321 1.06695 1.21276 0.93978 0.98744 0.94700 1.21213 1.01142 0.92546 1.04183 1.19336 0.93450 0.94771 0.97287 1.25019 1.08146 0.94808 0.92388 1.86472 1.59647 1.43166 1.48067 0.85079 0.72478 0.80447 0.80386 1.18874 1.17682 1.18069 1.20314 0.95492 0.96676 1.03941 0.89881 0.91311 0.92040 0.90245 0.91295 0.90198 0.93093 0.90771 0.90368 0.86713 0.87447 0.85782 0.90633 0.87782 0.85850 0.84608 0.83663 0.82960 0.86327 0.86173 0.82189 0.81919 0.84712 0.89272 0.75154 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.16 7.47 113.37 0.85 4.00 16 2 Si 1.07 -10.97 12.30 68.60 0.84 -10.13 16 3 C -0.45 4.64 8.65 113.37 0.98 5.62 16 4 C -0.48 2.36 7.57 113.37 0.86 3.21 16 5 C -0.21 1.99 4.62 127.77 0.59 2.58 16 6 N -0.58 0.52 1.96 -630.08 -1.24 -0.72 16 7 C 0.15 0.05 5.00 85.63 0.43 0.48 16 8 C -0.12 -0.34 5.46 -19.87 -0.11 -0.44 16 9 C -0.12 -0.93 9.70 22.27 0.22 -0.72 16 10 C -0.14 -0.80 10.05 22.27 0.22 -0.57 16 11 C -0.12 -0.29 10.05 22.27 0.22 -0.06 16 12 C -0.13 0.06 10.05 22.27 0.22 0.28 16 13 C -0.10 0.14 9.70 22.27 0.22 0.35 16 14 C 0.51 3.31 7.60 87.66 0.67 3.98 16 15 O -0.57 -9.52 15.87 15.94 0.25 -9.27 16 16 C 0.03 0.06 3.70 71.24 0.26 0.32 16 17 O -0.32 -3.39 9.67 -73.48 -0.71 -4.10 16 18 C 0.11 0.90 6.69 22.51 0.15 1.05 16 19 C -0.21 -0.23 9.04 22.37 0.20 -0.02 16 20 C -0.07 0.01 10.04 22.25 0.22 0.23 16 21 C -0.17 -0.54 8.67 22.28 0.19 -0.34 16 22 C -0.05 -0.30 5.38 -19.88 -0.11 -0.41 16 23 C -0.09 -0.20 2.79 71.24 0.20 0.00 16 24 O -0.56 -2.05 12.81 -148.98 -1.91 -3.96 16 25 Si 0.99 -0.66 25.14 68.60 1.72 1.07 16 26 H -0.26 -0.51 7.04 99.48 0.70 0.19 16 27 H -0.25 0.06 7.11 99.48 0.71 0.76 16 28 H -0.26 0.25 7.11 99.48 0.71 0.96 16 29 C -0.15 -1.41 9.62 22.36 0.22 -1.20 16 30 H 0.08 -0.75 7.96 -2.38 -0.02 -0.76 16 31 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.06 -0.25 7.09 -2.39 -0.02 -0.27 16 33 H 0.08 -0.88 7.96 -2.39 -0.02 -0.90 16 34 H 0.07 -0.58 7.96 -2.39 -0.02 -0.59 16 35 H 0.08 -0.88 7.96 -2.39 -0.02 -0.90 16 36 H 0.05 -0.02 7.96 -2.38 -0.02 -0.04 16 37 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 38 H 0.08 -0.55 6.81 -2.38 -0.02 -0.57 16 39 H 0.11 -1.48 7.93 -2.39 -0.02 -1.50 16 40 H 0.11 -1.38 5.97 -2.39 -0.01 -1.39 16 41 H 0.12 -0.74 6.04 -2.39 -0.01 -0.75 16 42 H 0.08 0.39 7.30 -2.38 -0.02 0.38 16 43 H 0.10 1.21 7.87 -2.91 -0.02 1.19 16 44 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 46 H 0.15 -0.77 8.06 -2.91 -0.02 -0.80 16 47 H 0.15 -1.23 8.06 -2.91 -0.02 -1.25 16 48 H 0.12 -0.49 6.90 -2.39 -0.02 -0.51 16 49 H 0.12 -0.42 5.05 -2.39 -0.01 -0.43 16 50 H 0.16 -1.01 6.30 -2.91 -0.02 -1.03 16 51 H 0.16 -1.12 8.06 -2.91 -0.02 -1.15 16 52 H 0.14 -0.02 4.86 -2.92 -0.01 -0.04 16 53 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 54 H 0.40 -2.37 8.74 -74.06 -0.65 -3.02 16 55 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 Total: 0.00 -27.11 443.74 6.66 -20.44 By element: Atomic # 1 Polarization: -12.66 SS G_CDS: 0.99 Total: -11.66 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.70 Total: 18.33 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -1.24 Total: -0.72 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -2.37 Total: -17.34 kcal Atomic # 14 Polarization: -11.63 SS G_CDS: 2.57 Total: -9.06 kcal Total: -27.11 6.66 -20.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17626732_4860298.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.106 kcal (2) G-P(sol) polarization free energy of solvation -27.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds