Wall clock time and date at job start Sun Mar 7 2021 08:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35988 * 116.99874 * 2 1 4 4 C 1.39162 * 120.07255 * 180.02562 * 3 2 1 5 5 O 1.35991 * 120.06845 * 359.97438 * 4 3 2 6 6 C 1.42900 * 116.99595 * 179.73021 * 5 4 3 7 7 C 1.50703 * 109.47361 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.50700 * 112.84969 * 310.91848 * 10 9 7 12 12 C 1.38438 * 120.01267 * 170.06087 * 11 10 9 13 13 F 1.35099 * 120.02592 * 359.97438 * 12 11 10 14 14 C 1.38484 * 119.94852 * 179.76846 * 12 11 10 15 15 C 1.38184 * 119.96966 * 0.52342 * 14 12 11 16 16 C 1.38267 * 120.02766 * 359.70747 * 15 14 12 17 17 C 1.38221 * 120.05300 * 0.03813 * 16 15 14 18 18 C 1.53782 * 113.61252 * 179.72355 * 10 9 7 19 19 C 1.53781 * 87.08011 * 270.87956 * 18 10 9 20 20 H 1.09003 * 113.61587 * 89.19746 * 19 18 10 21 21 F 1.39902 * 113.61700 * 220.02093 * 19 18 10 22 22 C 1.53781 * 113.61809 * 82.22354 * 10 9 7 23 23 C 1.38562 * 119.85451 * 179.72928 * 4 3 2 24 24 C 1.38242 * 119.99973 * 0.26607 * 23 4 3 25 25 N 1.48006 * 119.92696 * 180.02562 * 24 23 4 26 26 O 1.21795 * 119.99994 * 0.02562 * 25 24 23 27 27 O 1.21803 * 120.00105 * 180.02562 * 25 24 23 28 28 C 1.38257 * 120.14929 * 359.97438 * 24 23 4 29 29 C 1.50692 * 119.93084 * 180.02562 * 28 24 23 30 30 O 1.42905 * 109.46966 * 74.99834 * 29 28 24 31 31 Si 1.86304 * 109.47341 * 195.00061 * 29 28 24 32 32 C 1.38248 * 120.14169 * 0.02562 * 28 24 23 33 33 H 1.08993 * 109.47215 * 299.99979 * 1 2 3 34 34 H 1.09004 * 109.46652 * 60.00586 * 1 2 3 35 35 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 36 36 H 1.08998 * 109.47421 * 60.00070 * 6 5 4 37 37 H 1.09002 * 109.47461 * 300.00333 * 6 5 4 38 38 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 39 39 H 1.07994 * 120.01461 * 180.24827 * 14 12 11 40 40 H 1.07997 * 119.98460 * 179.72388 * 15 14 12 41 41 H 1.07996 * 119.97112 * 180.02562 * 16 15 14 42 42 H 1.07996 * 119.98900 * 179.97438 * 17 16 15 43 43 H 1.08995 * 113.61580 * 25.42971 * 18 10 9 44 44 H 1.09006 * 113.61227 * 156.25076 * 18 10 9 45 45 H 1.08994 * 113.61642 * 203.66436 * 22 10 9 46 46 H 1.09000 * 113.61025 * 334.56983 * 22 10 9 47 47 H 1.08003 * 120.00143 * 180.25061 * 23 4 3 48 48 H 1.09005 * 109.47259 * 315.00241 * 29 28 24 49 49 H 0.96703 * 113.99716 * 60.00872 * 30 29 28 50 50 H 1.48501 * 109.99889 * 58.68145 * 31 29 28 51 51 H 1.48497 * 109.99970 * 180.02562 * 31 29 28 52 52 H 1.07997 * 119.99712 * 180.02562 * 32 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1476 -0.0005 6 6 5.6003 0.3006 -0.0071 7 6 6.2519 -1.0582 -0.0067 8 8 5.5670 -2.0591 -0.0009 9 7 7.5957 -1.1612 -0.0118 10 6 8.2291 -2.4822 -0.0176 11 6 7.6656 -3.4059 1.0314 12 6 8.0052 -4.7480 1.0268 13 9 8.8414 -5.2305 0.0818 14 6 7.4904 -5.5947 1.9943 15 6 6.6300 -5.1013 2.9564 16 6 6.2878 -3.7616 2.9571 17 6 6.8051 -2.9145 1.9951 18 6 9.7659 -2.4285 -0.0298 19 6 9.6746 -2.4068 -1.5647 20 1 9.5999 -1.4033 -1.9836 21 9 10.6493 -3.1876 -2.1952 22 6 8.3185 -3.1165 -1.4156 23 6 4.0603 2.5233 -0.0062 24 6 3.3030 3.6798 -0.0058 25 7 3.9715 5.0002 -0.0124 26 8 5.1877 5.0671 -0.0187 27 8 3.3056 6.0201 -0.0116 28 6 1.9224 3.6058 -0.0002 29 6 1.1017 4.8696 -0.0003 30 8 1.1297 5.4556 -1.3034 31 14 -0.6577 4.4676 0.4622 32 6 1.2933 2.3748 0.0055 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 -0.3633 -1.0277 0.0005 36 1 5.9104 0.8529 0.8800 37 1 5.9027 0.8479 -0.8999 38 1 8.1435 -0.3607 -0.0161 39 1 7.7578 -6.6410 1.9941 40 1 6.2250 -5.7622 3.7083 41 1 5.6157 -3.3769 3.7097 42 1 6.5368 -1.8684 1.9964 43 1 10.1741 -1.5121 0.3963 44 1 10.2374 -3.3271 0.3682 45 1 8.3943 -4.2037 -1.3979 46 1 7.5582 -2.7554 -2.1083 47 1 5.1387 2.5839 -0.0107 48 1 1.5161 5.5720 0.7229 49 1 0.7749 4.8850 -1.9989 50 1 -0.6972 3.8285 1.8021 51 1 -1.4776 5.7057 0.4651 52 1 0.2147 2.3196 0.0094 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17636826_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:31:03 Heat of formation + Delta-G solvation = -107.433070 kcal Electronic energy + Delta-G solvation = -46443.767099 eV Core-core repulsion = 40211.185070 eV Total energy + Delta-G solvation = -6232.582030 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.141 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -50.19575 -48.62512 -43.39488 -42.25823 -41.86924 -40.22649 -39.37005 -39.17942 -38.74207 -37.72124 -37.12318 -34.48792 -32.68082 -32.58053 -32.21052 -31.41998 -29.84112 -28.74932 -27.91102 -27.22425 -26.19036 -25.69803 -24.05901 -23.70546 -23.24651 -22.88881 -22.08784 -20.90920 -20.68204 -19.86158 -19.50514 -18.92177 -18.72095 -18.65586 -18.38492 -17.98948 -17.72612 -17.66769 -17.35820 -17.16363 -17.11697 -16.89880 -16.83091 -16.70405 -16.38986 -16.08780 -16.00037 -15.89915 -15.69601 -15.52557 -15.06629 -14.92607 -14.77657 -14.44743 -14.38924 -14.16781 -13.91711 -13.86376 -13.76712 -13.54186 -13.42177 -13.09721 -13.00616 -12.85987 -12.77024 -12.66725 -12.49100 -12.43355 -12.33583 -12.26569 -12.21994 -12.16520 -11.77694 -11.61179 -11.46148 -11.13851 -10.53314 -10.46822 -10.44927 -9.86315 -9.65617 -9.48484 -5.13688 -1.36044 -0.42901 0.07907 0.16789 0.20395 0.31337 1.11384 1.13484 1.31716 1.56892 1.89710 1.90524 1.93864 2.19930 2.50438 2.98398 3.04955 3.13299 3.13752 3.19347 3.25266 3.28428 3.39216 3.47716 3.51902 3.56102 3.73513 3.78185 3.86277 3.93634 3.94393 3.96495 4.06081 4.09790 4.11978 4.22991 4.28736 4.34388 4.39344 4.41624 4.49229 4.55047 4.55451 4.59403 4.73566 4.74062 4.79625 4.82138 4.92950 4.98095 5.06685 5.25590 5.26740 5.37704 5.41592 5.57620 5.85477 6.05660 6.29253 6.46957 6.71493 7.00444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.306 6.306 3 C 0.172 3.828 4 C 0.103 3.897 5 O -0.287 6.287 6 C 0.026 3.974 7 C 0.515 3.485 8 O -0.535 6.535 9 N -0.691 5.691 10 C 0.203 3.797 11 C -0.115 4.115 12 C 0.083 3.917 13 F -0.140 7.140 14 C -0.164 4.164 15 C -0.091 4.091 16 C -0.137 4.137 17 C -0.065 4.065 18 C -0.144 4.144 19 C 0.071 3.929 20 H 0.143 0.857 21 F -0.220 7.220 22 C -0.184 4.184 23 C -0.109 4.109 24 C -0.046 4.046 25 N 0.035 4.965 26 O -0.184 6.184 27 O -0.169 6.169 28 C -0.040 4.040 29 C -0.091 4.091 30 O -0.536 6.536 31 Si 0.785 3.215 32 C -0.164 4.164 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.429 0.571 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.185 0.815 48 H 0.115 0.885 49 H 0.392 0.608 50 H -0.271 1.271 51 H -0.292 1.292 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -1.707 1.617 4.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.218 6.218 3 C 0.123 3.877 4 C 0.055 3.945 5 O -0.199 6.199 6 C -0.051 4.051 7 C 0.301 3.699 8 O -0.410 6.410 9 N -0.347 5.347 10 C 0.116 3.884 11 C -0.117 4.117 12 C 0.064 3.936 13 F -0.119 7.119 14 C -0.182 4.182 15 C -0.109 4.109 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.182 4.182 19 C 0.035 3.965 20 H 0.160 0.840 21 F -0.201 7.201 22 C -0.222 4.222 23 C -0.129 4.129 24 C -0.130 4.130 25 N 0.548 4.452 26 O -0.395 6.395 27 O -0.382 6.382 28 C -0.042 4.042 29 C -0.199 4.199 30 O -0.343 6.343 31 Si 0.688 3.312 32 C -0.182 4.182 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.269 0.731 39 H 0.166 0.834 40 H 0.173 0.827 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.098 0.902 47 H 0.202 0.798 48 H 0.132 0.868 49 H 0.242 0.758 50 H -0.197 1.197 51 H -0.219 1.219 52 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.348 -2.853 2.448 6.537 hybrid contribution 1.333 0.957 -0.117 1.645 sum -4.015 -1.895 2.331 5.015 Atomic orbital electron populations 1.23802 0.74757 1.07012 1.04165 1.86332 1.24777 1.24479 1.86175 1.18671 0.89210 0.86329 0.93526 1.17914 0.88721 0.85070 1.02766 1.86299 1.18251 1.26651 1.88735 1.22905 0.78990 0.95669 1.07582 1.20278 0.82614 0.90795 0.76227 1.90879 1.63505 1.39113 1.47509 1.45308 1.05639 1.08061 1.75695 1.19461 0.93190 0.82955 0.92838 1.19605 1.01304 0.92332 0.98409 1.17618 0.94126 0.92228 0.89672 1.91382 1.69404 1.88595 1.62492 1.21386 1.00213 1.00962 0.95663 1.21351 0.95701 0.95949 0.97872 1.21494 1.00596 0.94020 0.99443 1.20947 0.94034 1.00557 0.92749 1.23962 0.92066 1.06588 0.95621 1.23327 0.84994 0.95529 0.92655 0.84006 1.92799 1.65451 1.77488 1.84342 1.24411 0.97860 1.03442 0.96522 1.20911 1.03030 0.88106 1.00855 1.20562 0.92744 0.81931 1.17803 1.43735 1.00827 1.03472 0.97153 1.94498 0.96521 1.94126 1.54394 1.94584 1.64415 1.25451 1.53722 1.20213 0.91109 0.97615 0.95285 1.25752 1.10534 0.92864 0.90773 1.86674 1.87000 1.44636 1.16009 0.94406 0.71851 0.82199 0.82777 1.21079 1.01763 0.88150 1.07234 0.90160 0.88921 0.86163 0.85166 0.85255 0.73121 0.83400 0.82675 0.83818 0.85430 0.85772 0.88227 0.87793 0.90152 0.79832 0.86824 0.75816 1.19681 1.21927 0.79086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.66 10.28 -79.55 -0.82 -0.16 16 3 C 0.17 -0.51 6.70 22.57 0.15 -0.36 16 4 C 0.10 -0.20 6.70 22.57 0.15 -0.04 16 5 O -0.29 0.02 9.45 -67.03 -0.63 -0.61 16 6 C 0.03 -0.20 5.22 71.24 0.37 0.17 16 7 C 0.51 -1.22 5.85 87.66 0.51 -0.71 16 8 O -0.53 -4.21 13.70 16.00 0.22 -3.99 16 9 N -0.69 5.04 4.84 -423.92 -2.05 2.99 16 10 C 0.20 -0.30 1.06 3.38 0.00 -0.30 16 11 C -0.11 -0.39 4.57 -19.82 -0.09 -0.48 16 12 C 0.08 0.45 6.72 22.38 0.15 0.60 16 13 F -0.14 -0.98 12.94 44.97 0.58 -0.40 16 14 C -0.16 -0.49 10.03 22.32 0.22 -0.27 16 15 C -0.09 -0.06 10.04 22.26 0.22 0.16 16 16 C -0.14 -0.20 10.04 22.27 0.22 0.02 16 17 C -0.06 -0.18 7.39 22.26 0.16 -0.01 16 18 C -0.14 0.60 6.94 31.12 0.22 0.82 16 19 C 0.07 -0.15 5.58 31.12 0.17 0.02 16 20 H 0.14 -1.23 8.14 -2.39 -0.02 -1.25 16 21 F -0.22 -1.20 17.41 44.97 0.78 -0.42 16 22 C -0.18 -0.31 6.98 31.12 0.22 -0.10 16 23 C -0.11 0.30 8.54 22.35 0.19 0.49 16 24 C -0.05 -0.08 6.85 36.38 0.25 0.17 16 25 N 0.04 0.29 4.45 -46.46 -0.21 0.09 16 26 O -0.18 -1.69 18.44 18.89 0.35 -1.35 16 27 O -0.17 -2.01 14.62 25.10 0.37 -1.65 16 28 C -0.04 0.07 5.26 -19.86 -0.10 -0.03 16 29 C -0.09 0.07 1.74 71.23 0.12 0.20 16 30 O -0.54 -0.23 11.80 -129.63 -1.53 -1.76 16 31 Si 0.79 -4.72 29.91 68.60 2.05 -2.67 16 32 C -0.16 1.09 7.65 22.35 0.17 1.26 16 33 H 0.08 -1.14 7.65 -2.39 -0.02 -1.16 16 34 H 0.09 -1.49 7.68 -2.38 -0.02 -1.51 16 35 H 0.12 -1.51 8.14 -2.39 -0.02 -1.53 16 36 H 0.13 -1.82 7.66 -2.39 -0.02 -1.83 16 37 H 0.13 -1.74 7.66 -2.39 -0.02 -1.76 16 38 H 0.43 -6.66 8.63 -92.71 -0.80 -7.46 16 39 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 40 H 0.16 -0.70 8.06 -2.91 -0.02 -0.72 16 41 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.13 0.06 5.57 -2.91 -0.02 0.04 16 43 H 0.12 -1.31 8.12 -2.39 -0.02 -1.33 16 44 H 0.10 -0.05 6.96 -2.38 -0.02 -0.06 16 45 H 0.10 0.64 5.20 -2.39 -0.01 0.62 16 46 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.18 -1.39 5.85 -2.91 -0.02 -1.41 16 48 H 0.11 0.46 6.07 -2.38 -0.01 0.45 16 49 H 0.39 -3.75 8.70 -74.06 -0.64 -4.39 16 50 H -0.27 0.76 7.11 99.48 0.71 1.47 16 51 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 52 H 0.19 -2.61 3.36 -2.91 -0.01 -2.62 16 Total: 0.00 -35.07 433.44 3.21 -31.86 By element: Atomic # 1 Polarization: -24.35 SS G_CDS: -0.34 Total: -24.69 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 4.44 Total: 2.76 kcal Atomic # 7 Polarization: 5.33 SS G_CDS: -2.26 Total: 3.07 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -2.05 Total: -9.51 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 1.36 Total: -0.82 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.05 Total: -2.67 kcal Total: -35.07 3.21 -31.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.569 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds