Wall clock time and date at job start Sun Mar 7 2021 08:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00165 * 2 1 4 4 C 1.39155 * 120.07385 * 180.02562 * 3 2 1 5 5 O 1.35996 * 120.07034 * 359.69614 * 4 3 2 6 6 C 1.42895 * 117.00028 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47427 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99736 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99970 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99616 * 180.02562 * 9 7 6 11 11 C 1.50697 * 112.85272 * 48.80253 * 10 9 7 12 12 C 1.38437 * 120.01350 * 189.66763 * 11 10 9 13 13 F 1.35097 * 120.02342 * 359.97438 * 12 11 10 14 14 C 1.38474 * 119.94996 * 180.02562 * 12 11 10 15 15 C 1.38178 * 119.97292 * 359.97438 * 14 12 11 16 16 C 1.38269 * 120.02789 * 359.97438 * 15 14 12 17 17 C 1.38216 * 120.00897 * 9.39169 * 11 10 9 18 18 C 1.53784 * 113.61037 * 277.49141 * 10 9 7 19 19 C 1.53784 * 87.08411 * 270.88566 * 18 10 9 20 20 H 1.09000 * 113.61119 * 89.11871 * 19 18 10 21 21 F 1.39894 * 113.61512 * 220.02090 * 19 18 10 22 22 C 1.53779 * 87.08049 * 334.57177 * 19 18 10 23 23 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 24 24 C 1.38247 * 119.99917 * 359.97438 * 23 4 3 25 25 C 1.38245 * 120.14478 * 359.97438 * 24 23 4 26 26 C 1.50705 * 119.92659 * 180.02562 * 25 24 23 27 27 O 1.42898 * 109.46909 * 244.99759 * 26 25 24 28 28 Si 1.86301 * 109.46772 * 4.99336 * 26 25 24 29 29 C 1.38238 * 120.15318 * 0.04167 * 25 24 23 30 30 H 1.08998 * 109.46932 * 300.00387 * 1 2 3 31 31 H 1.09002 * 109.46940 * 59.99906 * 1 2 3 32 32 H 1.08991 * 109.47071 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46889 * 300.00032 * 6 5 4 34 34 H 1.09000 * 109.47312 * 59.99992 * 6 5 4 35 35 H 0.97003 * 120.00361 * 359.97438 * 9 7 6 36 36 H 1.08001 * 120.01400 * 179.97438 * 14 12 11 37 37 H 1.08003 * 119.98336 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.97372 * 179.97438 * 16 15 14 39 39 H 1.07999 * 119.99387 * 359.97438 * 17 11 10 40 40 H 1.08996 * 113.61504 * 25.43922 * 18 10 9 41 41 H 1.09000 * 113.61148 * 156.33822 * 18 10 9 42 42 H 1.09000 * 113.61460 * 270.88354 * 22 19 18 43 43 H 1.08997 * 113.69263 * 139.99358 * 22 19 18 44 44 H 1.08005 * 119.99992 * 179.97438 * 23 4 3 45 45 H 1.08002 * 119.92731 * 179.97438 * 24 23 4 46 46 H 1.08990 * 109.47754 * 124.99472 * 26 25 24 47 47 H 0.96706 * 114.00357 * 60.00150 * 27 26 25 48 48 H 1.48494 * 109.99841 * 58.68624 * 28 26 25 49 49 H 1.48506 * 109.99636 * 180.02562 * 28 26 25 50 50 H 1.07998 * 120.00548 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 0.0052 6 6 5.6003 0.3005 0.0048 7 6 6.2519 -1.0584 0.0109 8 8 5.5669 -2.0592 0.0157 9 7 7.5957 -1.1614 0.0122 10 6 8.2290 -2.4824 0.0176 11 6 7.6579 -3.4095 -1.0242 12 6 8.0019 -4.7505 -1.0212 13 9 8.8501 -5.2286 -0.0847 14 6 7.4767 -5.6011 -1.9794 15 6 6.6097 -5.1107 -2.9371 16 6 6.2660 -3.7715 -2.9385 17 6 6.7860 -2.9224 -1.9796 18 6 8.3287 -3.1120 1.4171 19 6 9.6859 -2.4019 1.5539 20 1 9.6129 -1.3971 1.9698 21 9 10.6652 -3.1806 2.1798 22 6 9.7659 -2.4287 0.0184 23 6 4.0604 2.5232 -0.0064 24 6 3.3031 3.6798 -0.0122 25 6 1.9226 3.6056 -0.0127 26 6 1.1018 4.8695 -0.0196 27 8 0.3640 4.9650 1.2004 28 14 2.2313 6.3425 -0.1792 29 6 1.2933 2.3748 -0.0066 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 5.9068 0.8460 -0.8878 34 1 5.9064 0.8545 0.8922 35 1 8.1435 -0.3609 0.0088 36 1 7.7447 -6.6473 -1.9783 37 1 6.2003 -5.7739 -3.6848 38 1 5.5886 -3.3891 -3.6877 39 1 6.5136 -1.8773 -1.9793 40 1 7.5736 -2.7487 2.1141 41 1 8.4043 -4.1993 1.4023 42 1 10.2344 -3.3291 -0.3788 43 1 10.1711 -1.5144 -0.4151 44 1 5.1388 2.5838 -0.0064 45 1 3.7909 4.6433 -0.0163 46 1 0.4102 4.8491 -0.8618 47 1 0.9168 4.9881 1.9936 48 1 3.0273 6.2391 -1.4285 49 1 1.4340 7.5954 -0.1867 50 1 0.2147 2.3197 -0.0066 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17636826_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:31:39 Heat of formation + Delta-G solvation = -117.163120 kcal Electronic energy + Delta-G solvation = -39117.121016 eV Core-core repulsion = 33715.133495 eV Total energy + Delta-G solvation = -5401.987521 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -50.03096 -48.52340 -42.15850 -41.64606 -39.98090 -39.17482 -38.94344 -38.60836 -36.96097 -34.46019 -32.33580 -31.97641 -31.50049 -31.33649 -29.63955 -28.46976 -27.23771 -26.35976 -25.94367 -23.91616 -23.55901 -22.90178 -22.57051 -21.96227 -20.81445 -19.84030 -18.77278 -18.64829 -18.41383 -17.97429 -17.92125 -17.57349 -17.18210 -17.08952 -17.05165 -16.84425 -16.69281 -16.61269 -16.14987 -16.01825 -15.88072 -15.76015 -15.67578 -15.55656 -15.32841 -14.84199 -14.74634 -14.30926 -14.29299 -14.06203 -13.82688 -13.78020 -13.67294 -13.53887 -13.49790 -12.99217 -12.81933 -12.72379 -12.66735 -12.56317 -12.27995 -12.15305 -12.10429 -12.02848 -11.80053 -11.60952 -11.46968 -11.02010 -10.50564 -10.45650 -9.84681 -9.77052 -9.55809 -8.91201 -5.10116 0.11786 0.17113 0.24299 0.30247 1.22110 1.22803 1.33923 1.57512 1.91631 2.26680 2.34887 2.51562 2.57433 3.01206 3.11779 3.22528 3.26832 3.33785 3.38170 3.50272 3.58849 3.64027 3.65205 3.73125 3.79659 3.84182 3.86828 3.93481 4.07327 4.10955 4.20246 4.25076 4.28897 4.32656 4.39126 4.44134 4.44667 4.50954 4.51726 4.53220 4.61457 4.77811 4.83374 4.94073 4.94877 5.03895 5.07064 5.10735 5.31672 5.31982 5.41294 5.49681 5.49836 5.88018 5.92851 6.14328 6.48254 6.51067 6.95360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.108 3.892 4 C 0.103 3.897 5 O -0.276 6.276 6 C 0.039 3.961 7 C 0.511 3.489 8 O -0.485 6.485 9 N -0.711 5.711 10 C 0.202 3.798 11 C -0.107 4.107 12 C 0.105 3.895 13 F -0.132 7.132 14 C -0.153 4.153 15 C -0.087 4.087 16 C -0.129 4.129 17 C -0.054 4.054 18 C -0.175 4.175 19 C 0.071 3.929 20 H 0.111 0.889 21 F -0.199 7.199 22 C -0.153 4.153 23 C -0.169 4.169 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.066 4.066 27 O -0.540 6.540 28 Si 0.688 3.312 29 C -0.146 4.146 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.408 0.592 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.113 0.887 47 H 0.380 0.620 48 H -0.257 1.257 49 H -0.255 1.255 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 5.041 -0.969 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.062 3.938 4 C 0.058 3.942 5 O -0.188 6.188 6 C -0.040 4.040 7 C 0.296 3.704 8 O -0.356 6.356 9 N -0.366 5.366 10 C 0.115 3.885 11 C -0.109 4.109 12 C 0.086 3.914 13 F -0.111 7.111 14 C -0.172 4.172 15 C -0.105 4.105 16 C -0.147 4.147 17 C -0.072 4.072 18 C -0.214 4.214 19 C 0.035 3.965 20 H 0.129 0.871 21 F -0.180 7.180 22 C -0.191 4.191 23 C -0.188 4.188 24 C -0.130 4.130 25 C -0.115 4.115 26 C -0.177 4.177 27 O -0.345 6.345 28 Si 0.590 3.410 29 C -0.165 4.165 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.244 0.756 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.157 0.843 45 H 0.150 0.850 46 H 0.130 0.870 47 H 0.227 0.773 48 H -0.182 1.182 49 H -0.180 1.180 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.591 4.574 -1.802 5.167 hybrid contribution -0.085 0.162 -0.104 0.210 sum 1.506 4.735 -1.906 5.322 Atomic orbital electron populations 1.23135 0.78075 1.04431 1.01385 1.86249 1.21363 1.25315 1.88519 1.18284 0.89013 0.85577 1.00938 1.18252 0.88261 0.85696 1.02023 1.86276 1.15803 1.27776 1.88949 1.22463 0.81543 0.95873 1.04169 1.20031 0.82225 0.90883 0.77271 1.90887 1.62355 1.37527 1.44841 1.45503 1.06105 1.07872 1.77150 1.19531 0.92316 0.82524 0.94171 1.19383 1.01227 0.92198 0.98052 1.17325 0.93127 0.91492 0.89467 1.91403 1.68346 1.88610 1.62692 1.21119 1.00009 1.00306 0.95792 1.21064 0.96119 0.95644 0.97690 1.21204 1.00512 0.93747 0.99221 1.20795 0.93787 1.00097 0.92500 1.24434 0.96835 1.04310 0.95798 1.23023 0.86505 0.94904 0.92073 0.87139 1.92839 1.64342 1.76764 1.84049 1.24027 0.93145 1.05682 0.96272 1.20987 1.00443 0.90690 1.06673 1.20667 0.92746 0.97777 1.01839 1.20045 0.93717 0.95227 1.02498 1.25039 1.00793 1.01615 0.90261 1.86507 1.36352 1.96593 1.15093 0.94754 0.81785 0.76717 0.87713 1.20949 1.00408 0.90427 1.04713 0.92404 0.92607 0.87856 0.88740 0.88550 0.75644 0.84448 0.84859 0.85333 0.86021 0.89479 0.85799 0.86766 0.88926 0.84290 0.85012 0.86965 0.77308 1.18168 1.17964 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 101.05 0.99 0.99 16 2 O -0.30 -1.13 10.28 -34.22 -0.35 -1.48 16 3 C 0.11 0.28 6.70 -39.12 -0.26 0.02 16 4 C 0.10 0.18 6.70 -39.12 -0.26 -0.09 16 5 O -0.28 -0.72 9.45 -47.35 -0.45 -1.17 16 6 C 0.04 -0.08 5.22 36.01 0.19 0.11 16 7 C 0.51 0.08 5.83 -10.99 -0.06 0.01 16 8 O -0.48 -2.44 13.68 -14.35 -0.20 -2.63 16 9 N -0.71 1.81 4.86 -47.92 -0.23 1.58 16 10 C 0.20 -0.05 1.07 -132.15 -0.14 -0.19 16 11 C -0.11 -0.21 4.58 -104.56 -0.48 -0.69 16 12 C 0.11 0.26 6.71 -39.42 -0.26 0.00 16 13 F -0.13 -0.38 12.93 2.25 0.03 -0.35 16 14 C -0.15 -0.24 10.03 -39.52 -0.40 -0.64 16 15 C -0.09 -0.08 10.04 -39.59 -0.40 -0.48 16 16 C -0.13 -0.19 10.05 -39.57 -0.40 -0.58 16 17 C -0.05 -0.11 7.38 -39.59 -0.29 -0.40 16 18 C -0.18 -0.15 6.98 -25.92 -0.18 -0.33 16 19 C 0.07 -0.05 5.58 -25.92 -0.14 -0.20 16 20 H 0.11 -0.37 8.14 -51.93 -0.42 -0.79 16 21 F -0.20 -0.52 17.41 2.25 0.04 -0.48 16 22 C -0.15 0.24 6.94 -25.92 -0.18 0.06 16 23 C -0.17 0.21 9.04 -39.46 -0.36 -0.15 16 24 C -0.11 0.16 8.66 -39.58 -0.34 -0.18 16 25 C -0.11 0.03 5.35 -104.62 -0.56 -0.53 16 26 C -0.07 0.05 2.80 36.01 0.10 0.15 16 27 O -0.54 0.16 12.83 -35.23 -0.45 -0.30 16 28 Si 0.69 -1.26 29.79 -169.99 -5.06 -6.32 16 29 C -0.15 -0.15 8.67 -39.46 -0.34 -0.49 16 30 H 0.06 -0.06 7.67 -51.93 -0.40 -0.46 16 31 H 0.06 -0.06 7.65 -51.93 -0.40 -0.46 16 32 H 0.10 -0.13 8.14 -51.93 -0.42 -0.56 16 33 H 0.09 -0.46 7.66 -51.93 -0.40 -0.86 16 34 H 0.10 -0.47 7.66 -51.93 -0.40 -0.86 16 35 H 0.41 -2.58 8.64 -40.82 -0.35 -2.94 16 36 H 0.14 -0.02 8.06 -52.49 -0.42 -0.44 16 37 H 0.13 -0.18 8.06 -52.48 -0.42 -0.60 16 38 H 0.13 -0.02 8.06 -52.49 -0.42 -0.45 16 39 H 0.12 0.15 5.53 -52.49 -0.29 -0.14 16 40 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.12 0.29 5.23 -51.93 -0.27 0.02 16 42 H 0.11 -0.04 6.93 -51.93 -0.36 -0.40 16 43 H 0.09 -0.37 8.12 -51.93 -0.42 -0.80 16 44 H 0.14 -0.63 6.30 -52.48 -0.33 -0.96 16 45 H 0.13 -0.49 4.89 -52.49 -0.26 -0.75 16 46 H 0.11 -0.04 7.96 -51.93 -0.41 -0.45 16 47 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 48 H -0.26 -0.10 7.11 56.52 0.40 0.30 16 49 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 50 H 0.14 0.02 6.30 -52.49 -0.33 -0.31 16 LS Contribution 411.42 15.07 6.20 6.20 Total: 0.00 -11.69 411.42 -10.22 -21.91 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: -5.96 Total: -13.38 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.78 Total: -3.59 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -0.23 Total: 1.58 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -1.45 Total: -5.58 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.07 Total: -0.82 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.06 Total: -6.32 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -11.69 -10.22 -21.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.254 kcal (2) G-P(sol) polarization free energy of solvation -11.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds