Wall clock time and date at job start Sun Mar 7 2021 08:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00165 * 2 1 4 4 C 1.39155 * 120.07385 * 180.02562 * 3 2 1 5 5 O 1.35996 * 120.07034 * 359.69614 * 4 3 2 6 6 C 1.42895 * 117.00028 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47427 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99736 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99970 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99616 * 180.02562 * 9 7 6 11 11 C 1.50697 * 112.85272 * 48.80253 * 10 9 7 12 12 C 1.38437 * 120.01350 * 189.66763 * 11 10 9 13 13 F 1.35097 * 120.02342 * 359.97438 * 12 11 10 14 14 C 1.38474 * 119.94996 * 180.02562 * 12 11 10 15 15 C 1.38178 * 119.97292 * 359.97438 * 14 12 11 16 16 C 1.38269 * 120.02789 * 359.97438 * 15 14 12 17 17 C 1.38216 * 120.00897 * 9.39169 * 11 10 9 18 18 C 1.53784 * 113.61037 * 277.49141 * 10 9 7 19 19 C 1.53784 * 87.08411 * 270.88566 * 18 10 9 20 20 H 1.09000 * 113.61119 * 89.11871 * 19 18 10 21 21 F 1.39894 * 113.61512 * 220.02090 * 19 18 10 22 22 C 1.53779 * 87.08049 * 334.57177 * 19 18 10 23 23 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 24 24 C 1.38247 * 119.99917 * 359.97438 * 23 4 3 25 25 C 1.38245 * 120.14478 * 359.97438 * 24 23 4 26 26 C 1.50705 * 119.92659 * 180.02562 * 25 24 23 27 27 O 1.42898 * 109.46909 * 244.99759 * 26 25 24 28 28 Si 1.86301 * 109.46772 * 4.99336 * 26 25 24 29 29 C 1.38238 * 120.15318 * 0.04167 * 25 24 23 30 30 H 1.08998 * 109.46932 * 300.00387 * 1 2 3 31 31 H 1.09002 * 109.46940 * 59.99906 * 1 2 3 32 32 H 1.08991 * 109.47071 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46889 * 300.00032 * 6 5 4 34 34 H 1.09000 * 109.47312 * 59.99992 * 6 5 4 35 35 H 0.97003 * 120.00361 * 359.97438 * 9 7 6 36 36 H 1.08001 * 120.01400 * 179.97438 * 14 12 11 37 37 H 1.08003 * 119.98336 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.97372 * 179.97438 * 16 15 14 39 39 H 1.07999 * 119.99387 * 359.97438 * 17 11 10 40 40 H 1.08996 * 113.61504 * 25.43922 * 18 10 9 41 41 H 1.09000 * 113.61148 * 156.33822 * 18 10 9 42 42 H 1.09000 * 113.61460 * 270.88354 * 22 19 18 43 43 H 1.08997 * 113.69263 * 139.99358 * 22 19 18 44 44 H 1.08005 * 119.99992 * 179.97438 * 23 4 3 45 45 H 1.08002 * 119.92731 * 179.97438 * 24 23 4 46 46 H 1.08990 * 109.47754 * 124.99472 * 26 25 24 47 47 H 0.96706 * 114.00357 * 60.00150 * 27 26 25 48 48 H 1.48494 * 109.99841 * 58.68624 * 28 26 25 49 49 H 1.48506 * 109.99636 * 180.02562 * 28 26 25 50 50 H 1.07998 * 120.00548 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 0.0052 6 6 5.6003 0.3005 0.0048 7 6 6.2519 -1.0584 0.0109 8 8 5.5669 -2.0592 0.0157 9 7 7.5957 -1.1614 0.0122 10 6 8.2290 -2.4824 0.0176 11 6 7.6579 -3.4095 -1.0242 12 6 8.0019 -4.7505 -1.0212 13 9 8.8501 -5.2286 -0.0847 14 6 7.4767 -5.6011 -1.9794 15 6 6.6097 -5.1107 -2.9371 16 6 6.2660 -3.7715 -2.9385 17 6 6.7860 -2.9224 -1.9796 18 6 8.3287 -3.1120 1.4171 19 6 9.6859 -2.4019 1.5539 20 1 9.6129 -1.3971 1.9698 21 9 10.6652 -3.1806 2.1798 22 6 9.7659 -2.4287 0.0184 23 6 4.0604 2.5232 -0.0064 24 6 3.3031 3.6798 -0.0122 25 6 1.9226 3.6056 -0.0127 26 6 1.1018 4.8695 -0.0196 27 8 0.3640 4.9650 1.2004 28 14 2.2313 6.3425 -0.1792 29 6 1.2933 2.3748 -0.0066 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 5.9068 0.8460 -0.8878 34 1 5.9064 0.8545 0.8922 35 1 8.1435 -0.3609 0.0088 36 1 7.7447 -6.6473 -1.9783 37 1 6.2003 -5.7739 -3.6848 38 1 5.5886 -3.3891 -3.6877 39 1 6.5136 -1.8773 -1.9793 40 1 7.5736 -2.7487 2.1141 41 1 8.4043 -4.1993 1.4023 42 1 10.2344 -3.3291 -0.3788 43 1 10.1711 -1.5144 -0.4151 44 1 5.1388 2.5838 -0.0064 45 1 3.7909 4.6433 -0.0163 46 1 0.4102 4.8491 -0.8618 47 1 0.9168 4.9881 1.9936 48 1 3.0273 6.2391 -1.4285 49 1 1.4340 7.5954 -0.1867 50 1 0.2147 2.3197 -0.0066 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17636826_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:31:38 Heat of formation + Delta-G solvation = -117.772800 kcal Electronic energy + Delta-G solvation = -39117.147453 eV Core-core repulsion = 33715.133495 eV Total energy + Delta-G solvation = -5402.013959 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -50.19106 -48.60613 -42.13149 -41.61922 -39.98760 -39.21738 -38.93177 -38.61476 -36.90535 -34.43187 -32.35417 -31.93879 -31.44000 -31.41731 -29.52398 -28.46009 -27.20019 -26.30961 -25.90714 -23.92127 -23.59278 -22.91741 -22.54322 -21.88883 -20.80710 -19.78594 -18.83346 -18.59428 -18.37028 -17.97298 -17.92655 -17.49787 -17.19447 -17.10545 -17.05636 -16.91234 -16.75314 -16.64463 -16.09872 -16.00311 -15.91559 -15.72780 -15.64371 -15.59378 -15.26949 -14.89999 -14.67528 -14.40534 -14.29537 -14.09405 -13.82684 -13.75354 -13.60097 -13.47967 -13.42245 -13.06998 -12.85625 -12.75094 -12.62458 -12.53112 -12.22536 -12.13346 -12.10282 -11.96274 -11.75087 -11.59059 -11.44058 -11.04273 -10.42796 -10.41797 -9.85347 -9.78507 -9.65139 -8.90621 -4.96563 0.07983 0.17550 0.20640 0.28843 1.33772 1.34326 1.40090 1.68187 2.01150 2.30711 2.46651 2.50836 2.57125 3.07534 3.15272 3.18697 3.27763 3.42417 3.50297 3.54558 3.70252 3.75059 3.79665 3.86745 3.88442 3.99072 4.05978 4.10427 4.12543 4.14521 4.28385 4.28944 4.29986 4.34784 4.36129 4.49932 4.50979 4.57318 4.62331 4.64200 4.65253 4.76046 4.80648 4.95338 4.98350 5.01335 5.07486 5.13161 5.27037 5.38398 5.39570 5.43275 5.59862 5.85546 5.96320 6.35267 6.53233 6.78319 7.09589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.076 3.924 4 C 0.088 3.912 5 O -0.311 6.311 6 C 0.034 3.966 7 C 0.510 3.490 8 O -0.543 6.543 9 N -0.689 5.689 10 C 0.202 3.798 11 C -0.115 4.115 12 C 0.083 3.917 13 F -0.140 7.140 14 C -0.164 4.164 15 C -0.092 4.092 16 C -0.140 4.140 17 C -0.064 4.064 18 C -0.186 4.186 19 C 0.073 3.927 20 H 0.145 0.855 21 F -0.220 7.220 22 C -0.143 4.143 23 C -0.159 4.159 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.077 4.077 27 O -0.558 6.558 28 Si 0.787 3.213 29 C -0.154 4.154 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.430 0.570 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.179 0.821 45 H 0.161 0.839 46 H 0.102 0.898 47 H 0.395 0.605 48 H -0.279 1.279 49 H -0.305 1.305 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 7.531 -1.207 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C 0.030 3.970 4 C 0.042 3.958 5 O -0.225 6.225 6 C -0.044 4.044 7 C 0.297 3.703 8 O -0.418 6.418 9 N -0.346 5.346 10 C 0.115 3.885 11 C -0.117 4.117 12 C 0.063 3.937 13 F -0.118 7.118 14 C -0.183 4.183 15 C -0.109 4.109 16 C -0.158 4.158 17 C -0.082 4.082 18 C -0.224 4.224 19 C 0.037 3.963 20 H 0.163 0.837 21 F -0.201 7.201 22 C -0.181 4.181 23 C -0.177 4.177 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.186 4.186 27 O -0.366 6.366 28 Si 0.693 3.307 29 C -0.173 4.173 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.270 0.730 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.145 0.855 44 H 0.196 0.804 45 H 0.178 0.822 46 H 0.120 0.880 47 H 0.245 0.755 48 H -0.205 1.205 49 H -0.233 1.233 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.324 7.074 -2.020 8.073 hybrid contribution -0.685 -0.608 -0.032 0.916 sum 2.639 6.466 -2.052 7.279 Atomic orbital electron populations 1.23260 0.76956 1.05109 1.02002 1.86187 1.22841 1.26657 1.89109 1.18676 0.90037 0.85500 1.02738 1.18533 0.88025 0.86554 1.02664 1.86221 1.18072 1.28901 1.89300 1.22782 0.79465 0.94730 1.07392 1.20550 0.82578 0.91239 0.75936 1.90872 1.63718 1.39540 1.47694 1.45290 1.05587 1.07901 1.75820 1.19464 0.93258 0.83110 0.92707 1.19634 1.01113 0.92444 0.98487 1.17609 0.93831 0.92279 0.89936 1.91383 1.68643 1.88746 1.63050 1.21380 1.00144 1.00936 0.95824 1.21342 0.95777 0.95907 0.97919 1.21498 1.00647 0.94111 0.99530 1.20958 0.93909 1.00600 0.92751 1.24408 0.98009 1.03344 0.96668 1.23314 0.84634 0.95602 0.92723 0.83724 1.92796 1.65125 1.77630 1.84532 1.23953 0.91837 1.06629 0.95658 1.21406 1.02366 0.89230 1.04674 1.21009 0.92160 0.99080 1.00337 1.20189 0.94604 0.94721 1.02537 1.25273 1.01007 1.02398 0.89951 1.86470 1.37550 1.96608 1.15989 0.93680 0.79231 0.72423 0.85400 1.21007 1.00420 0.90719 1.05147 0.91824 0.91928 0.87174 0.85241 0.85102 0.73003 0.83347 0.82713 0.84013 0.85460 0.90346 0.88049 0.88355 0.85512 0.80370 0.82220 0.88034 0.75451 1.20517 1.23349 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.29 10.28 -79.62 -0.82 -4.11 16 3 C 0.08 0.49 6.70 22.57 0.15 0.65 16 4 C 0.09 0.27 6.70 22.57 0.15 0.42 16 5 O -0.31 -1.63 9.45 -67.09 -0.63 -2.26 16 6 C 0.03 -0.21 5.22 71.24 0.37 0.16 16 7 C 0.51 -0.14 5.83 87.66 0.51 0.37 16 8 O -0.54 -6.21 13.68 16.01 0.22 -5.99 16 9 N -0.69 4.53 4.86 -423.91 -2.06 2.47 16 10 C 0.20 -0.11 1.07 3.38 0.00 -0.11 16 11 C -0.11 -0.58 4.58 -19.82 -0.09 -0.67 16 12 C 0.08 0.57 6.71 22.37 0.15 0.72 16 13 F -0.14 -1.13 12.93 44.97 0.58 -0.55 16 14 C -0.16 -0.75 10.03 22.31 0.22 -0.53 16 15 C -0.09 -0.24 10.04 22.26 0.22 -0.02 16 16 C -0.14 -0.52 10.05 22.28 0.22 -0.29 16 17 C -0.06 -0.31 7.38 22.26 0.16 -0.14 16 18 C -0.19 -0.51 6.98 31.12 0.22 -0.29 16 19 C 0.07 -0.15 5.58 31.12 0.17 0.02 16 20 H 0.15 -1.33 8.14 -2.39 -0.02 -1.35 16 21 F -0.22 -1.21 17.41 44.97 0.78 -0.42 16 22 C -0.14 0.58 6.94 31.12 0.22 0.79 16 23 C -0.16 0.80 9.04 22.35 0.20 1.00 16 24 C -0.11 0.56 8.66 22.27 0.19 0.75 16 25 C -0.12 0.12 5.35 -19.86 -0.11 0.02 16 26 C -0.08 0.15 2.80 71.24 0.20 0.35 16 27 O -0.56 0.40 12.83 -148.98 -1.91 -1.51 16 28 Si 0.79 -3.90 29.79 68.60 2.04 -1.85 16 29 C -0.15 -0.45 8.67 22.35 0.19 -0.25 16 30 H 0.06 -0.01 7.67 -2.39 -0.02 -0.02 16 31 H 0.06 -0.02 7.65 -2.39 -0.02 -0.04 16 32 H 0.11 -0.07 8.14 -2.39 -0.02 -0.08 16 33 H 0.13 -1.74 7.66 -2.38 -0.02 -1.76 16 34 H 0.13 -1.75 7.66 -2.39 -0.02 -1.76 16 35 H 0.43 -6.83 8.64 -92.71 -0.80 -7.63 16 36 H 0.15 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.16 -0.41 8.06 -2.91 -0.02 -0.43 16 38 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 39 H 0.13 0.35 5.53 -2.91 -0.02 0.33 16 40 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.10 0.75 5.23 -2.39 -0.01 0.74 16 42 H 0.10 -0.02 6.93 -2.39 -0.02 -0.03 16 43 H 0.13 -1.40 8.12 -2.39 -0.02 -1.42 16 44 H 0.18 -2.47 6.30 -2.91 -0.02 -2.49 16 45 H 0.16 -1.79 4.89 -2.91 -0.01 -1.81 16 46 H 0.10 -0.02 7.96 -2.39 -0.02 -0.04 16 47 H 0.40 -3.52 8.70 -74.05 -0.64 -4.17 16 48 H -0.28 0.34 7.11 99.48 0.71 1.04 16 49 H -0.30 -1.07 7.11 99.48 0.71 -0.36 16 50 H 0.14 0.28 6.30 -2.91 -0.02 0.26 16 Total: 0.00 -33.03 411.42 2.32 -30.71 By element: Atomic # 1 Polarization: -20.23 SS G_CDS: -0.37 Total: -20.59 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.48 Total: 4.11 kcal Atomic # 7 Polarization: 4.53 SS G_CDS: -2.06 Total: 2.47 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -3.15 Total: -13.87 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 1.36 Total: -0.97 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.04 Total: -1.85 kcal Total: -33.03 2.32 -30.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17636826_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.068 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds