Wall clock time and date at job start Sun Mar 7 2021 11:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46911 * 2 1 4 4 C 1.50702 * 109.47407 * 240.00398 * 2 1 3 5 5 C 1.38271 * 119.93932 * 299.99985 * 4 2 1 6 6 C 1.38145 * 120.05403 * 179.97438 * 5 4 2 7 7 C 1.38730 * 119.94416 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.05316 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99732 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47178 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47208 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.50702 * 112.85273 * 48.80095 * 14 13 11 16 16 C 1.38440 * 120.01596 * 189.38661 * 15 14 13 17 17 F 1.35097 * 120.02361 * 0.02562 * 16 15 14 18 18 C 1.38479 * 119.94805 * 179.72892 * 16 15 14 19 19 C 1.38171 * 119.97494 * 0.56866 * 18 16 15 20 20 C 1.38270 * 120.02764 * 359.70726 * 19 18 16 21 21 C 1.38222 * 120.00951 * 9.66660 * 15 14 13 22 22 C 1.53776 * 113.61563 * 277.49430 * 14 13 11 23 23 C 1.53780 * 87.08288 * 270.88560 * 22 14 13 24 24 H 1.09004 * 113.61671 * 220.01902 * 23 22 14 25 25 O 1.42894 * 113.61636 * 89.11316 * 23 22 14 26 26 C 1.53781 * 87.08006 * 334.56577 * 23 22 14 27 27 C 1.38729 * 119.88881 * 0.28065 * 7 6 5 28 28 C 1.38150 * 119.94491 * 359.42334 * 27 7 6 29 29 H 0.96700 * 113.99808 * 299.99705 * 1 2 3 30 30 H 1.08999 * 109.47778 * 119.99785 * 2 1 3 31 31 H 1.48502 * 109.99965 * 178.68467 * 3 2 1 32 32 H 1.48497 * 110.00224 * 299.99884 * 3 2 1 33 33 H 1.08003 * 119.96861 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.02508 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47600 * 60.00051 * 9 8 7 36 36 H 1.08998 * 109.47515 * 300.00028 * 9 8 7 37 37 H 1.09009 * 109.46730 * 59.99802 * 10 9 8 38 38 H 1.08998 * 109.46846 * 300.00347 * 10 9 8 39 39 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 40 40 H 1.08005 * 120.01073 * 180.29913 * 18 16 15 41 41 H 1.08003 * 119.98970 * 179.72450 * 19 18 16 42 42 H 1.07999 * 119.97780 * 180.02562 * 20 19 18 43 43 H 1.07999 * 119.98889 * 359.95529 * 21 15 14 44 44 H 1.09000 * 113.61774 * 25.43315 * 22 14 13 45 45 H 1.09000 * 113.61639 * 156.34055 * 22 14 13 46 46 H 0.96701 * 114.00282 * 82.50751 * 25 23 22 47 47 H 1.08998 * 113.61475 * 270.87863 * 26 23 22 48 48 H 1.09005 * 113.69189 * 139.99224 * 26 23 22 49 49 H 1.08000 * 120.03011 * 179.71639 * 27 7 6 50 50 H 1.07997 * 119.97546 * 180.32194 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.5966 -2.0341 -1.4482 6 6 2.0554 -2.6874 -2.5756 7 6 2.8522 -2.0140 -3.4901 8 8 3.3044 -2.6543 -4.6002 9 6 4.1204 -1.8989 -5.4977 10 6 4.5301 -2.7805 -6.6792 11 6 5.3902 -1.9837 -7.6260 12 8 5.6496 -0.8247 -7.3802 13 7 5.8661 -2.5573 -8.7490 14 6 6.6972 -1.7809 -9.6723 15 6 7.8123 -1.0432 -8.9769 16 6 8.5667 -0.1136 -9.6720 17 9 8.3035 0.1333 -10.9739 18 6 9.5874 0.5675 -9.0302 19 6 9.8594 0.3102 -7.7001 20 6 9.1090 -0.6227 -7.0084 21 6 8.0859 -1.2988 -7.6464 22 6 5.8871 -0.9044 -10.6419 23 6 5.8661 -2.1129 -11.5927 24 1 6.0014 -1.8463 -12.6409 25 8 4.7576 -2.9892 -11.3803 26 6 7.1598 -2.5780 -10.9035 27 6 3.1910 -0.6874 -3.2667 28 6 2.7247 -0.0367 -2.1408 29 1 -0.3933 0.4417 0.7651 30 1 1.7924 -0.5138 0.8900 31 1 3.5345 1.7704 0.0320 32 1 1.5614 2.4680 -1.2085 33 1 0.9752 -2.5575 -0.7365 34 1 1.7933 -3.7213 -2.7454 35 1 5.0125 -1.5540 -4.9748 36 1 3.5588 -1.0395 -5.8637 37 1 3.6378 -3.1250 -7.2020 38 1 5.0916 -3.6401 -6.3136 39 1 5.6583 -3.4841 -8.9456 40 1 10.1734 1.2965 -9.5702 41 1 10.6582 0.8380 -7.2005 42 1 9.3220 -0.8229 -5.9687 43 1 7.5000 -2.0268 -7.1049 44 1 4.9026 -0.6295 -10.2634 45 1 6.4452 -0.0527 -11.0308 46 1 3.9410 -2.7021 -11.8114 47 1 8.0658 -2.1838 -11.3638 48 1 7.2042 -3.6541 -10.7355 49 1 3.8150 -0.1623 -3.9747 50 1 2.9838 0.9975 -1.9690 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_4549602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:57:43 Heat of formation + Delta-G solvation = -90.902195 kcal Electronic energy + Delta-G solvation = -36022.781897 eV Core-core repulsion = 31091.387111 eV Total energy + Delta-G solvation = -4931.394786 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -50.16770 -42.20531 -41.39876 -39.93100 -39.44632 -39.10113 -37.25923 -36.30365 -34.24015 -33.30442 -32.25011 -32.00954 -31.51415 -31.38304 -27.08635 -26.94190 -26.11259 -25.33183 -23.90704 -23.60845 -22.81340 -22.17010 -21.52047 -20.69457 -19.68701 -18.89600 -18.37766 -18.28195 -17.92440 -17.71636 -17.55481 -17.32673 -17.00170 -16.89727 -16.76894 -16.66210 -16.18719 -15.91638 -15.60676 -15.56954 -15.28631 -14.91448 -14.79604 -14.74227 -14.57513 -14.41017 -14.05839 -13.95417 -13.87574 -13.73336 -13.64580 -13.49287 -13.12696 -12.93478 -12.88806 -12.54730 -12.50755 -12.39687 -12.05907 -11.99425 -11.95745 -11.82029 -11.67339 -11.15043 -10.86184 -10.32139 -10.26228 -10.20034 -9.85880 -9.63814 -9.33148 -4.98673 0.08391 0.09755 0.15534 0.19957 1.28980 1.42438 1.54635 1.59878 1.94958 2.30345 2.49091 2.52030 2.99381 3.18366 3.31055 3.35944 3.40657 3.46624 3.55709 3.58701 3.68662 3.71123 3.74938 3.79848 3.90226 3.93877 4.01819 4.08977 4.19864 4.24336 4.29512 4.33105 4.36588 4.42705 4.54918 4.56869 4.58099 4.66007 4.67561 4.78861 4.79424 4.81388 4.84167 4.86982 4.97570 5.03872 5.04425 5.10350 5.26424 5.34570 5.39082 5.49747 5.57036 5.85061 6.17493 6.38250 6.76742 6.92118 7.08635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.069 4.069 3 Si 0.770 3.230 4 C -0.129 4.129 5 C -0.054 4.054 6 C -0.152 4.152 7 C 0.125 3.875 8 O -0.316 6.316 9 C 0.075 3.925 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.562 6.562 13 N -0.686 5.686 14 C 0.194 3.806 15 C -0.115 4.115 16 C 0.085 3.915 17 F -0.137 7.137 18 C -0.162 4.162 19 C -0.094 4.094 20 C -0.139 4.139 21 C -0.070 4.070 22 C -0.187 4.187 23 C 0.093 3.907 24 H 0.089 0.911 25 O -0.558 6.558 26 C -0.122 4.122 27 C -0.211 4.211 28 C -0.103 4.103 29 H 0.404 0.596 30 H 0.098 0.902 31 H -0.291 1.291 32 H -0.303 1.303 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.421 0.579 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.123 0.877 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.399 0.601 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.135 0.865 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -2.630 1.919 3.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.180 4.180 3 Si 0.677 3.323 4 C -0.129 4.129 5 C -0.072 4.072 6 C -0.171 4.171 7 C 0.079 3.921 8 O -0.230 6.230 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.305 3.695 12 O -0.440 6.440 13 N -0.338 5.338 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.066 3.934 17 F -0.116 7.116 18 C -0.181 4.181 19 C -0.112 4.112 20 C -0.157 4.157 21 C -0.088 4.088 22 C -0.225 4.225 23 C 0.034 3.966 24 H 0.106 0.894 25 O -0.366 6.366 26 C -0.159 4.159 27 C -0.229 4.229 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.116 0.884 31 H -0.219 1.219 32 H -0.231 1.231 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.259 0.741 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.141 0.859 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.249 0.751 47 H 0.130 0.870 48 H 0.115 0.885 49 H 0.153 0.847 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.416 -2.072 1.349 2.849 hybrid contribution -0.324 0.128 -1.034 1.091 sum 1.092 -1.944 0.315 2.252 Atomic orbital electron populations 1.86437 1.17132 1.82332 1.51435 1.24668 0.85881 1.10269 0.97146 0.94602 0.77172 0.75914 0.84607 1.19654 1.00573 0.95461 0.97244 1.21079 0.96489 0.93236 0.96363 1.20797 1.00244 1.01919 0.94100 1.19122 0.94663 0.90951 0.87322 1.85962 1.65284 1.40453 1.31311 1.22422 0.94050 0.94020 0.89525 1.21427 1.01979 0.99536 0.94107 1.20552 0.79706 0.87344 0.81929 1.90808 1.59165 1.18574 1.75501 1.45437 1.51136 1.16185 1.21070 1.19867 0.88740 0.92931 0.87828 1.19790 0.97530 0.98874 0.95451 1.17525 0.98351 0.98892 0.78661 1.91360 1.92861 1.93446 1.33891 1.21385 0.98381 1.01790 0.96527 1.21334 0.99614 0.97004 0.93253 1.21483 0.95823 0.97179 1.01257 1.20955 0.95874 0.99019 0.92929 1.24410 1.00920 0.99523 0.97669 1.22558 0.87405 0.88823 0.97833 0.89361 1.86337 1.21937 1.50181 1.78185 1.23429 0.97722 1.01772 0.92995 1.21304 1.06067 0.95003 1.00544 1.20802 0.98285 0.98677 0.94332 0.74518 0.88395 1.21857 1.23125 0.82884 0.82967 0.91502 0.92191 0.85775 0.85312 0.74056 0.83149 0.82730 0.84042 0.85924 0.91893 0.87487 0.75089 0.86961 0.88523 0.84747 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.26 12.74 -148.98 -1.90 -2.15 16 2 C -0.07 -0.05 2.81 71.24 0.20 0.15 16 3 Si 0.77 0.07 29.78 68.60 2.04 2.12 16 4 C -0.13 -0.86 5.42 -19.85 -0.11 -0.97 16 5 C -0.05 -0.27 9.60 22.26 0.21 -0.05 16 6 C -0.15 -0.82 9.99 22.37 0.22 -0.60 16 7 C 0.12 0.95 6.69 22.50 0.15 1.10 16 8 O -0.32 -1.79 10.14 -92.41 -0.94 -2.72 16 9 C 0.08 0.23 4.03 71.98 0.29 0.52 16 10 C -0.13 0.29 6.07 29.85 0.18 0.47 16 11 C 0.52 1.25 5.76 87.66 0.50 1.76 16 12 O -0.56 -5.71 13.17 -3.04 -0.04 -5.75 16 13 N -0.69 0.32 4.42 -423.93 -1.87 -1.55 16 14 C 0.19 0.44 1.07 3.38 0.00 0.45 16 15 C -0.11 -0.66 4.57 -19.82 -0.09 -0.75 16 16 C 0.09 0.51 6.71 22.38 0.15 0.66 16 17 F -0.14 -0.74 12.93 44.97 0.58 -0.16 16 18 C -0.16 -0.59 10.03 22.31 0.22 -0.36 16 19 C -0.09 -0.20 10.04 22.26 0.22 0.03 16 20 C -0.14 -0.49 10.04 22.27 0.22 -0.27 16 21 C -0.07 -0.39 7.39 22.26 0.16 -0.22 16 22 C -0.19 -0.52 6.92 31.12 0.22 -0.30 16 23 C 0.09 -0.17 5.28 31.12 0.16 -0.01 16 24 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 25 O -0.56 1.68 12.91 -148.98 -1.92 -0.25 16 26 C -0.12 0.14 6.87 31.12 0.21 0.35 16 27 C -0.21 -1.81 9.04 22.37 0.20 -1.61 16 28 C -0.10 -0.93 8.66 22.25 0.19 -0.74 16 29 H 0.40 -4.14 8.74 -74.06 -0.65 -4.79 16 30 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H -0.29 -1.66 7.11 99.48 0.71 -0.95 16 32 H -0.30 -2.58 7.11 99.48 0.71 -1.88 16 33 H 0.15 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.15 0.20 8.06 -2.91 -0.02 0.18 16 35 H 0.07 0.27 7.61 -2.39 -0.02 0.25 16 36 H 0.06 0.33 7.63 -2.39 -0.02 0.31 16 37 H 0.12 -0.62 8.14 -2.38 -0.02 -0.64 16 38 H 0.13 -0.83 8.14 -2.39 -0.02 -0.84 16 39 H 0.42 -1.97 8.42 -92.71 -0.78 -2.75 16 40 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 41 H 0.16 -0.49 8.06 -2.91 -0.02 -0.52 16 42 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 43 H 0.12 0.53 5.55 -2.91 -0.02 0.51 16 44 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.11 0.48 5.25 -2.39 -0.01 0.47 16 46 H 0.40 -3.70 9.12 -74.06 -0.68 -4.38 16 47 H 0.11 -0.12 6.91 -2.39 -0.02 -0.14 16 48 H 0.10 -0.28 8.12 -2.38 -0.02 -0.29 16 49 H 0.13 0.96 6.30 -2.91 -0.02 0.94 16 50 H 0.12 0.98 4.87 -2.91 -0.01 0.97 16 Total: 0.00 -23.35 406.63 -1.54 -24.89 By element: Atomic # 1 Polarization: -13.00 SS G_CDS: -1.04 Total: -14.03 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 3.54 Total: -0.39 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -1.87 Total: -1.55 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -4.80 Total: -10.87 kcal Atomic # 9 Polarization: -0.74 SS G_CDS: 0.58 Total: -0.16 kcal Atomic # 14 Polarization: 0.07 SS G_CDS: 2.04 Total: 2.12 kcal Total: -23.35 -1.54 -24.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_4549602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.008 kcal (2) G-P(sol) polarization free energy of solvation -23.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds