Wall clock time and date at job start Sun Mar 7 2021 11:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47370 * 2 1 4 4 C 1.50703 * 109.47098 * 240.00049 * 2 1 3 5 5 C 1.38244 * 119.96967 * 120.02167 * 4 2 1 6 6 C 1.38292 * 120.10742 * 179.97438 * 5 4 2 7 7 C 1.38125 * 120.05664 * 359.76349 * 6 5 4 8 8 C 1.38748 * 119.94512 * 0.51061 * 7 6 5 9 9 O 1.35899 * 120.05890 * 179.73832 * 8 7 6 10 10 C 1.42897 * 116.99904 * 359.73333 * 9 8 7 11 11 C 1.52999 * 109.47261 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46924 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99843 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99996 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99767 * 179.97438 * 15 13 12 17 17 C 1.50690 * 112.90646 * 311.24538 * 16 15 13 18 18 C 1.38438 * 120.01294 * 168.75038 * 17 16 15 19 19 F 1.35105 * 120.02510 * 359.97438 * 18 17 16 20 20 C 1.38481 * 119.95250 * 180.02562 * 18 17 16 21 21 C 1.38179 * 119.97125 * 0.02562 * 20 18 17 22 22 C 1.38261 * 120.02733 * 359.97438 * 21 20 18 23 23 C 1.38223 * 120.01811 * 348.48062 * 17 16 15 24 24 C 1.53786 * 113.61079 * 179.97438 * 16 15 13 25 25 C 1.53781 * 87.17350 * 270.92464 * 24 16 15 26 26 H 1.09000 * 113.61379 * 219.89528 * 25 24 16 27 27 O 1.42900 * 113.61524 * 89.07583 * 25 24 16 28 28 C 1.53781 * 87.08070 * 334.52830 * 25 24 16 29 29 C 1.38167 * 119.97301 * 300.00349 * 4 2 1 30 30 H 0.96696 * 114.00086 * 300.00014 * 1 2 3 31 31 H 1.08996 * 109.47316 * 120.00197 * 2 1 3 32 32 H 1.48506 * 109.99956 * 300.00435 * 3 2 1 33 33 H 1.48504 * 109.99539 * 61.31923 * 3 2 1 34 34 H 1.07997 * 119.95053 * 359.97438 * 5 4 2 35 35 H 1.07999 * 119.96766 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.02693 * 180.28098 * 7 6 5 37 37 H 1.09001 * 109.47224 * 59.99620 * 10 9 8 38 38 H 1.09001 * 109.47102 * 300.00046 * 10 9 8 39 39 H 1.09001 * 109.46867 * 59.99946 * 11 10 9 40 40 H 1.08996 * 109.46992 * 299.99894 * 11 10 9 41 41 H 1.08992 * 109.47050 * 60.00420 * 12 11 10 42 42 H 1.08996 * 109.47335 * 299.99864 * 12 11 10 43 43 H 0.96995 * 119.99799 * 359.97438 * 15 13 12 44 44 H 1.08002 * 120.01159 * 179.97438 * 20 18 17 45 45 H 1.07998 * 119.98332 * 179.97438 * 21 20 18 46 46 H 1.07998 * 119.97619 * 180.02562 * 22 21 20 47 47 H 1.07999 * 119.98304 * 359.97438 * 23 17 16 48 48 H 1.09002 * 113.61357 * 156.33381 * 24 16 15 49 49 H 1.09002 * 113.61608 * 25.51543 * 24 16 15 50 50 H 0.96699 * 114.00447 * 180.02562 * 27 25 24 51 51 H 1.09005 * 113.61471 * 139.98321 * 28 25 24 52 52 H 1.08996 * 113.61178 * 270.79663 * 28 25 24 53 53 H 1.08000 * 120.02768 * 359.97438 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7264 -0.0381 -2.1398 6 6 3.1894 -0.6874 -3.2697 7 6 2.8623 -2.0112 -3.4898 8 6 2.0597 -2.6865 -2.5815 9 8 1.7320 -3.9874 -2.7984 10 6 2.2441 -4.5961 -3.9856 11 6 1.7737 -6.0502 -4.0569 12 6 2.3214 -6.7016 -5.3283 13 6 1.8576 -8.1338 -5.3988 14 8 1.1581 -8.5887 -4.5185 15 7 2.2207 -8.9093 -6.4395 16 6 1.7702 -10.3017 -6.5077 17 6 1.9948 -11.0545 -5.2218 18 6 1.4197 -12.3004 -5.0393 19 9 0.6564 -12.8419 -6.0137 20 6 1.6264 -12.9909 -3.8569 21 6 2.4060 -12.4354 -2.8604 22 6 2.9799 -11.1909 -3.0437 23 6 2.7797 -10.5038 -4.2262 24 6 2.2689 -11.0500 -7.7553 25 6 1.0019 -10.5493 -8.4686 26 1 0.5457 -11.2932 -9.1217 27 8 1.1664 -9.2797 -9.1036 28 6 0.3488 -10.4630 -7.0791 29 6 1.5971 -2.0332 -1.4486 30 1 -0.3933 0.4417 0.7650 31 1 1.7923 -0.5138 0.8899 32 1 1.5614 2.4679 -1.2085 33 1 1.5879 2.4585 1.2243 34 1 2.9865 0.9959 -1.9677 35 1 3.8107 -0.1601 -3.9784 36 1 3.2278 -2.5191 -4.3700 37 1 3.3336 -4.5674 -3.9678 38 1 1.8806 -4.0531 -4.8581 39 1 0.6842 -6.0791 -4.0746 40 1 2.1375 -6.5929 -3.1844 41 1 3.4108 -6.6727 -5.3110 42 1 1.9573 -6.1588 -6.2006 43 1 2.7804 -8.5455 -7.1433 44 1 1.1779 -13.9628 -3.7133 45 1 2.5671 -12.9735 -1.9380 46 1 3.5894 -10.7577 -2.2645 47 1 3.2324 -9.5339 -4.3702 48 1 2.3013 -12.1324 -7.6313 49 1 3.1921 -10.6435 -8.1684 50 1 0.3728 -8.9592 -9.5537 51 1 -0.2784 -9.5815 -6.9454 52 1 -0.1451 -11.3845 -6.7709 53 1 0.9765 -2.5582 -0.7376 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17639084_4549616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:57:52 Heat of formation + Delta-G solvation = -98.033023 kcal Electronic energy + Delta-G solvation = -37509.313040 eV Core-core repulsion = 32422.071418 eV Total energy + Delta-G solvation = -5087.241621 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.172 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -50.15408 -42.06908 -41.24425 -39.82160 -39.40266 -39.09668 -37.48842 -36.26774 -34.89936 -33.88852 -32.58573 -32.04244 -31.34512 -31.21373 -28.44790 -27.03020 -26.85955 -25.80680 -23.93336 -23.66207 -23.49683 -22.66819 -21.76470 -21.37784 -20.63813 -18.98142 -18.83573 -18.59380 -18.28016 -18.01223 -17.63469 -17.44783 -17.26219 -17.05370 -16.90176 -16.88319 -16.60641 -16.31986 -15.84051 -15.68707 -15.57335 -15.25142 -15.04076 -14.90080 -14.60837 -14.53710 -14.25447 -14.20422 -13.91663 -13.80390 -13.70639 -13.55898 -13.44681 -13.24403 -13.20704 -12.95562 -12.67202 -12.51702 -12.41046 -12.32620 -12.22094 -11.96698 -11.91381 -11.66459 -11.62904 -11.59230 -11.00461 -10.79979 -10.58405 -10.16444 -9.88559 -9.81501 -9.58964 -9.24128 -4.92474 0.12747 0.21538 0.24162 0.41154 1.27757 1.59928 1.61053 1.85502 1.95096 2.31274 2.56195 2.64597 3.02523 3.22115 3.35917 3.37106 3.45265 3.53965 3.66555 3.75182 3.76182 3.82982 3.87635 3.88268 3.99104 4.03687 4.12296 4.17695 4.26705 4.27749 4.32445 4.35221 4.37891 4.40621 4.41687 4.52696 4.60487 4.62951 4.68803 4.70112 4.83184 4.86345 4.88502 4.91848 4.98780 5.00565 5.01883 5.08986 5.16483 5.28146 5.31072 5.38621 5.43497 5.47133 5.58771 5.73947 5.89315 6.42770 6.52723 6.55528 6.79286 7.25683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.096 4.096 3 Si 0.779 3.221 4 C -0.049 4.049 5 C -0.162 4.162 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.338 6.338 10 C 0.057 3.943 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.507 3.493 14 O -0.566 6.566 15 N -0.689 5.689 16 C 0.193 3.807 17 C -0.112 4.112 18 C 0.082 3.918 19 F -0.137 7.137 20 C -0.163 4.163 21 C -0.096 4.096 22 C -0.138 4.138 23 C -0.070 4.070 24 C -0.121 4.121 25 C 0.094 3.906 26 H 0.087 0.913 27 O -0.557 6.557 28 C -0.191 4.191 29 C -0.153 4.153 30 H 0.395 0.605 31 H 0.092 0.908 32 H -0.296 1.296 33 H -0.286 1.286 34 H 0.146 0.854 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.420 0.580 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.143 0.857 47 H 0.125 0.875 48 H 0.110 0.890 49 H 0.097 0.903 50 H 0.398 0.602 51 H 0.060 0.940 52 H 0.108 0.892 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 1.380 -3.545 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.203 4.203 3 Si 0.684 3.316 4 C -0.049 4.049 5 C -0.180 4.180 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.071 3.929 9 O -0.252 6.252 10 C -0.017 4.017 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.295 3.705 14 O -0.444 6.444 15 N -0.342 5.342 16 C 0.105 3.895 17 C -0.114 4.114 18 C 0.063 3.937 19 F -0.116 7.116 20 C -0.182 4.182 21 C -0.113 4.113 22 C -0.156 4.156 23 C -0.088 4.088 24 C -0.158 4.158 25 C 0.034 3.966 26 H 0.105 0.895 27 O -0.365 6.365 28 C -0.230 4.230 29 C -0.172 4.172 30 H 0.245 0.755 31 H 0.110 0.890 32 H -0.224 1.224 33 H -0.213 1.213 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.258 0.742 44 H 0.167 0.833 45 H 0.172 0.828 46 H 0.161 0.839 47 H 0.143 0.857 48 H 0.128 0.872 49 H 0.115 0.885 50 H 0.248 0.752 51 H 0.079 0.921 52 H 0.126 0.874 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.098 1.363 -3.174 7.894 hybrid contribution -2.169 -0.237 0.052 2.182 sum 4.930 1.126 -3.121 5.942 Atomic orbital electron populations 1.86553 1.18645 1.80860 1.50985 1.25218 0.84083 1.12713 0.98327 0.93985 0.90125 0.71072 0.76453 1.19292 0.96949 0.92798 0.95832 1.21144 1.00888 1.00670 0.95269 1.21300 0.97509 0.93550 0.96610 1.21602 1.02698 0.96830 1.01340 1.19176 0.95194 0.83646 0.94894 1.86046 1.71699 1.22781 1.44697 1.22994 0.99811 0.93165 0.85722 1.21111 1.01363 0.92877 0.98197 1.21529 1.04661 0.90583 0.99892 1.21104 0.79610 0.88932 0.80879 1.90801 1.38631 1.75363 1.39645 1.45512 1.53594 1.09719 1.25384 1.19882 0.96240 0.82283 0.91059 1.19792 0.99922 0.93638 0.98024 1.17555 0.95474 0.93237 0.87460 1.91335 1.73371 1.85570 1.61329 1.21380 1.02069 1.01998 0.92706 1.21330 0.95398 0.95408 0.99203 1.21490 1.00854 0.95425 0.97848 1.20946 0.96212 0.98831 0.92785 1.23401 0.99111 1.01091 0.92212 1.22547 0.96025 0.86405 0.91609 0.89519 1.86330 1.41963 1.35428 1.72820 1.24524 0.96315 1.03824 0.98319 1.20319 1.03925 0.94999 0.97931 0.75472 0.89008 1.22362 1.21302 0.83644 0.82095 0.82735 0.89529 0.90277 0.92522 0.91687 0.85373 0.86013 0.74188 0.83267 0.82756 0.83923 0.85738 0.87180 0.88482 0.75155 0.92111 0.87402 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.04 12.74 -148.98 -1.90 -4.94 16 2 C -0.10 -0.21 2.81 71.24 0.20 -0.01 16 3 Si 0.78 -0.95 29.79 68.60 2.04 1.09 16 4 C -0.05 -0.26 5.42 -19.88 -0.11 -0.37 16 5 C -0.16 -0.25 8.67 22.28 0.19 -0.06 16 6 C -0.07 0.05 10.04 22.26 0.22 0.27 16 7 C -0.21 -0.20 9.04 22.36 0.20 0.00 16 8 C 0.12 0.77 6.69 22.51 0.15 0.92 16 9 O -0.34 -2.44 10.14 -92.41 -0.94 -3.37 16 10 C 0.06 -0.08 4.74 71.98 0.34 0.26 16 11 C -0.10 -0.05 4.87 30.59 0.15 0.10 16 12 C -0.13 0.69 5.70 29.85 0.17 0.86 16 13 C 0.51 1.03 5.81 87.66 0.51 1.53 16 14 O -0.57 -6.41 13.27 -3.06 -0.04 -6.45 16 15 N -0.69 0.65 4.40 -423.50 -1.86 -1.21 16 16 C 0.19 0.47 1.07 3.47 0.00 0.48 16 17 C -0.11 -0.69 4.51 -19.82 -0.09 -0.77 16 18 C 0.08 0.54 6.73 22.38 0.15 0.69 16 19 F -0.14 -0.84 12.95 44.97 0.58 -0.26 16 20 C -0.16 -0.68 10.03 22.31 0.22 -0.46 16 21 C -0.10 -0.24 10.04 22.26 0.22 -0.02 16 22 C -0.14 -0.52 10.04 22.27 0.22 -0.29 16 23 C -0.07 -0.40 7.42 22.26 0.17 -0.23 16 24 C -0.12 0.14 6.87 31.12 0.21 0.35 16 25 C 0.09 -0.16 5.28 31.12 0.16 0.00 16 26 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 27 O -0.56 1.86 12.91 -148.98 -1.92 -0.06 16 28 C -0.19 -0.63 6.92 31.21 0.22 -0.41 16 29 C -0.15 -1.32 9.55 22.37 0.21 -1.11 16 30 H 0.39 -1.24 8.74 -74.06 -0.65 -1.89 16 31 H 0.09 -0.12 7.96 -2.39 -0.02 -0.13 16 32 H -0.30 -1.66 7.11 99.48 0.71 -0.96 16 33 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 34 H 0.15 -0.43 4.87 -2.91 -0.01 -0.44 16 35 H 0.16 -1.15 8.06 -2.91 -0.02 -1.18 16 36 H 0.16 -0.76 6.30 -2.91 -0.02 -0.78 16 37 H 0.09 -0.51 7.65 -2.39 -0.02 -0.53 16 38 H 0.08 -0.36 7.67 -2.39 -0.02 -0.38 16 39 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 40 H 0.06 0.27 8.10 -2.39 -0.02 0.25 16 41 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 42 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 43 H 0.42 -2.38 8.42 -92.71 -0.78 -3.16 16 44 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 45 H 0.15 -0.43 8.06 -2.91 -0.02 -0.46 16 46 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 47 H 0.12 0.50 5.72 -2.91 -0.02 0.49 16 48 H 0.11 -0.11 7.07 -2.39 -0.02 -0.12 16 49 H 0.10 -0.31 8.12 -2.39 -0.02 -0.33 16 50 H 0.40 -3.81 9.12 -74.06 -0.68 -4.48 16 51 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 52 H 0.11 0.56 5.10 -2.39 -0.01 0.55 16 53 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 Total: 0.00 -26.85 428.49 -1.37 -28.23 By element: Atomic # 1 Polarization: -13.70 SS G_CDS: -1.08 Total: -14.78 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 3.74 Total: 1.75 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -1.86 Total: -1.21 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -4.80 Total: -14.83 kcal Atomic # 9 Polarization: -0.84 SS G_CDS: 0.58 Total: -0.26 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: 2.04 Total: 1.09 kcal Total: -26.85 -1.37 -28.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17639084_4549616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.808 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds