Wall clock time and date at job start Sun Mar 7 2021 13:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35714 * 117.00510 * 2 1 4 4 C 1.38687 * 119.85722 * 359.97438 * 3 2 1 5 5 C 1.38442 * 120.02963 * 179.97438 * 4 3 2 6 6 O 1.35662 * 120.12330 * 179.97438 * 5 4 3 7 7 C 1.42904 * 116.99370 * 0.02562 * 6 5 4 8 8 C 1.40306 * 119.75945 * 0.02562 * 5 4 3 9 9 C 1.47301 * 120.13125 * 179.97438 * 8 5 4 10 10 O 1.21618 * 120.00387 * 359.72863 * 9 8 5 11 11 N 1.34778 * 119.99672 * 179.97438 * 9 8 5 12 12 C 1.46499 * 120.00063 * 179.72162 * 11 9 8 13 13 H 1.08995 * 112.85155 * 336.20504 * 12 11 9 14 14 C 1.53783 * 113.60999 * 107.50633 * 12 11 9 15 15 C 1.53780 * 87.08065 * 89.11777 * 14 12 11 16 16 H 1.09003 * 113.61612 * 270.88420 * 15 14 12 17 17 C 1.53001 * 113.69044 * 139.99199 * 15 14 12 18 18 C 1.52994 * 109.47290 * 317.54215 * 17 15 14 19 19 C 1.52995 * 109.47102 * 77.54671 * 17 15 14 20 20 C 1.53006 * 109.46976 * 197.54162 * 17 15 14 21 21 C 1.53780 * 87.08449 * 25.43171 * 15 14 12 22 22 C 1.39851 * 119.73067 * 0.25313 * 8 5 4 23 23 C 1.37551 * 119.96139 * 359.46988 * 22 8 5 24 24 C 1.50694 * 119.87957 * 180.27136 * 23 22 8 25 25 O 1.42909 * 109.47160 * 105.25611 * 24 23 22 26 26 Si 1.86303 * 109.47485 * 345.26120 * 24 23 22 27 27 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47290 * 300.00886 * 1 2 3 29 29 H 1.09001 * 109.47111 * 60.00203 * 1 2 3 30 30 H 1.07994 * 119.99034 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.47296 * 60.00174 * 7 6 5 32 32 H 1.09003 * 109.46227 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47142 * 299.99212 * 7 6 5 34 34 H 0.97004 * 119.99814 * 359.73156 * 11 9 8 35 35 H 1.08999 * 113.61542 * 203.66127 * 14 12 11 36 36 H 1.09004 * 113.61548 * 334.57050 * 14 12 11 37 37 H 1.08997 * 109.47109 * 66.29031 * 18 17 15 38 38 H 1.09000 * 109.47356 * 186.29460 * 18 17 15 39 39 H 1.09004 * 109.46897 * 306.29169 * 18 17 15 40 40 H 1.09000 * 109.47753 * 60.00266 * 19 17 15 41 41 H 1.09004 * 109.47321 * 179.97438 * 19 17 15 42 42 H 1.09001 * 109.47238 * 299.99626 * 19 17 15 43 43 H 1.09007 * 109.46828 * 59.99850 * 20 17 15 44 44 H 1.09001 * 109.47336 * 179.97438 * 20 17 15 45 45 H 1.08997 * 109.47461 * 300.00286 * 20 17 15 46 46 H 1.08997 * 113.61775 * 220.02061 * 21 15 14 47 47 H 1.09001 * 113.61529 * 89.11299 * 21 15 14 48 48 H 1.08000 * 120.01943 * 179.74246 * 22 8 5 49 49 H 1.09001 * 109.47714 * 225.25589 * 24 23 22 50 50 H 0.96701 * 114.00327 * 180.02562 * 25 24 23 51 51 H 1.48501 * 109.99987 * 59.99110 * 26 24 23 52 52 H 1.48491 * 110.00300 * 181.31869 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2871 2.3705 -0.0005 5 6 1.9120 3.6058 0.0000 6 8 1.1722 4.7430 -0.0011 7 6 -0.2489 4.5924 -0.0021 8 6 3.3132 3.6775 0.0005 9 6 3.9866 4.9875 0.0005 10 8 3.3280 6.0099 -0.0049 11 7 5.3328 5.0532 0.0016 12 6 6.0026 6.3561 -0.0046 13 1 5.3793 7.1506 -0.4147 14 6 6.6598 6.7171 1.3381 15 6 7.9219 6.0061 0.8217 16 1 7.9483 4.9411 1.0521 17 6 9.2235 6.7246 1.1832 18 6 9.0494 8.2304 0.9762 19 6 9.5692 6.4476 2.6476 20 6 10.3537 6.2139 0.2871 21 6 7.4207 6.3169 -0.5985 22 6 4.0678 2.5001 -0.0048 23 6 3.4353 1.2786 0.0004 24 6 4.2503 0.0111 0.0008 25 8 4.2142 -0.5780 1.3023 26 14 6.0135 0.4062 -0.4531 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2087 2.3112 -0.0014 31 1 -0.5567 4.0435 0.8878 32 1 -0.7183 5.5761 -0.0024 33 1 -0.5553 4.0429 -0.8922 34 1 5.8581 4.2377 0.0063 35 1 6.7920 7.7890 1.4853 36 1 6.2010 6.2244 2.1953 37 1 8.3231 8.6140 1.6927 38 1 10.0062 8.7307 1.1254 39 1 8.6947 8.4192 -0.0371 40 1 9.6934 5.3748 2.7951 41 1 10.4967 6.9591 2.9050 42 1 8.7641 6.8114 3.2861 43 1 10.1074 6.4111 -0.7563 44 1 11.2809 6.7260 0.5442 45 1 10.4778 5.1411 0.4345 46 1 7.5759 5.5012 -1.3046 47 1 7.7606 7.2794 -0.9806 48 1 5.1467 2.5498 -0.0086 49 1 3.8359 -0.6877 -0.7259 50 1 4.7192 -1.3994 1.3764 51 1 6.5899 1.3582 0.5301 52 1 6.8206 -0.8397 -0.4873 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_12297780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:38:35 Heat of formation + Delta-G solvation = -83.882748 kcal Electronic energy + Delta-G solvation = -32509.596981 eV Core-core repulsion = 28249.789881 eV Total energy + Delta-G solvation = -4259.807101 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.197 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.15319 -41.37333 -40.23969 -39.58789 -38.40671 -37.16817 -36.47083 -33.81254 -32.38741 -31.54257 -28.98616 -28.42728 -28.25068 -28.15341 -26.26371 -26.17795 -25.95878 -24.49338 -22.86192 -21.59611 -21.12912 -19.99854 -19.06856 -18.66679 -18.55172 -18.11029 -17.30997 -17.10034 -16.79520 -16.54555 -16.44232 -16.29136 -15.85553 -15.79542 -15.75635 -15.48288 -15.17856 -15.05463 -14.45410 -14.24773 -14.10197 -13.88499 -13.78140 -13.76759 -13.51225 -13.42803 -13.13269 -12.80229 -12.73744 -12.65936 -12.54377 -12.51527 -12.37837 -12.15280 -11.99965 -11.90037 -11.81985 -11.64370 -11.30243 -11.07269 -10.94850 -10.83262 -10.42284 -10.07309 -9.92626 -9.20578 -4.93336 -0.27730 0.05761 1.28427 1.58128 1.70081 1.91850 2.07332 2.10203 2.17044 2.56153 3.31890 3.49229 3.57533 3.59861 3.67011 3.70204 3.79302 3.85475 3.91888 4.08151 4.10432 4.15769 4.22529 4.27395 4.27803 4.30302 4.30749 4.32051 4.43658 4.58051 4.63245 4.66997 4.75100 4.76183 4.77483 4.80416 4.84892 4.86302 4.93980 5.00291 5.02249 5.03327 5.06106 5.16362 5.18384 5.23858 5.27625 5.29656 5.42999 5.51291 5.53569 5.72923 6.01911 6.27338 6.51000 6.63773 7.22688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.215 3.785 4 C -0.310 4.310 5 C 0.219 3.781 6 O -0.304 6.304 7 C 0.010 3.990 8 C -0.228 4.228 9 C 0.566 3.434 10 O -0.562 6.562 11 N -0.703 5.703 12 C 0.114 3.886 13 H 0.083 0.917 14 C -0.151 4.151 15 C -0.093 4.093 16 H 0.089 0.911 17 C -0.057 4.057 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.140 4.140 21 C -0.131 4.131 22 C 0.000 4.000 23 C -0.162 4.162 24 C -0.073 4.073 25 O -0.556 6.556 26 Si 0.754 3.246 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.166 0.834 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.407 0.593 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.157 0.843 49 H 0.085 0.915 50 H 0.392 0.608 51 H -0.273 1.273 52 H -0.281 1.281 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -4.145 -3.410 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.222 6.222 3 C 0.167 3.833 4 C -0.329 4.329 5 C 0.169 3.831 6 O -0.215 6.215 7 C -0.085 4.085 8 C -0.233 4.233 9 C 0.355 3.645 10 O -0.442 6.442 11 N -0.355 5.355 12 C 0.009 3.991 13 H 0.101 0.899 14 C -0.190 4.190 15 C -0.111 4.111 16 H 0.107 0.893 17 C -0.057 4.057 18 C -0.205 4.205 19 C -0.199 4.199 20 C -0.197 4.197 21 C -0.169 4.169 22 C -0.018 4.018 23 C -0.163 4.163 24 C -0.181 4.181 25 O -0.365 6.365 26 Si 0.657 3.343 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.183 0.817 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.125 0.875 48 H 0.174 0.826 49 H 0.103 0.897 50 H 0.242 0.758 51 H -0.199 1.199 52 H -0.207 1.207 Dipole moment (debyes) X Y Z Total from point charges 0.422 -2.916 -3.056 4.245 hybrid contribution -0.651 -1.313 1.157 1.867 sum -0.229 -4.229 -1.899 4.642 Atomic orbital electron populations 1.23482 0.76040 1.06112 1.02624 1.86110 1.23666 1.25962 1.86498 1.18896 0.91573 0.84305 0.88570 1.21415 1.02162 0.90523 1.18799 1.18955 0.90153 0.85616 0.88359 1.86369 1.20783 1.28288 1.86014 1.23489 0.76607 1.05654 1.02707 1.19118 0.91031 0.93581 1.19531 1.18033 0.82421 0.88389 0.75650 1.90805 1.65547 1.36905 1.50942 1.45493 1.05431 1.09410 1.75150 1.21867 0.93873 0.85370 0.98037 0.89861 1.23593 0.96559 1.02074 0.96751 1.22598 0.93021 0.99458 0.96063 0.89265 1.20405 0.94523 0.95452 0.95326 1.22038 1.01611 0.94695 1.02183 1.21854 1.01130 1.01365 0.95577 1.21837 0.97298 1.00921 0.99642 1.23428 0.92351 1.04255 0.96847 1.20927 0.99909 0.89286 0.91723 1.18589 0.90757 0.94622 1.12344 1.24840 1.11009 0.94427 0.87851 1.86570 1.75305 1.44175 1.30488 0.94389 0.71588 0.80660 0.87624 0.86046 0.91714 0.90819 0.81662 0.91234 0.86837 0.90690 0.75530 0.88268 0.92773 0.92658 0.92744 0.91623 0.92851 0.92696 0.93206 0.91893 0.92906 0.92658 0.89490 0.87487 0.82635 0.89732 0.75774 1.19949 1.20748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.80 113.37 1.11 1.06 16 2 O -0.31 -0.84 9.80 -90.36 -0.89 -1.73 16 3 C 0.21 0.93 6.67 22.60 0.15 1.08 16 4 C -0.31 -1.03 8.01 22.43 0.18 -0.85 16 5 C 0.22 1.78 6.70 22.82 0.15 1.93 16 6 O -0.30 -3.01 8.56 -68.81 -0.59 -3.60 16 7 C 0.01 0.00 9.81 113.37 1.11 1.11 16 8 C -0.23 -1.81 5.89 -20.00 -0.12 -1.93 16 9 C 0.57 6.04 7.76 86.63 0.67 6.72 16 10 O -0.56 -10.54 14.75 16.88 0.25 -10.29 16 11 N -0.70 -2.63 5.21 -443.41 -2.31 -4.94 16 12 C 0.11 0.33 4.32 45.52 0.20 0.52 16 13 H 0.08 0.61 7.46 -2.39 -0.02 0.59 16 14 C -0.15 -0.27 7.04 31.12 0.22 -0.05 16 15 C -0.09 0.17 2.90 -10.27 -0.03 0.14 16 16 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 17 C -0.06 0.10 0.68 -52.18 -0.04 0.07 16 18 C -0.15 0.26 7.53 71.98 0.54 0.80 16 19 C -0.14 0.06 8.42 71.98 0.61 0.66 16 20 C -0.14 0.38 8.33 71.98 0.60 0.98 16 21 C -0.13 0.36 6.46 31.12 0.20 0.56 16 22 C 0.00 0.00 8.14 22.50 0.18 0.18 16 23 C -0.16 -0.61 5.31 -19.80 -0.11 -0.72 16 24 C -0.07 -0.04 2.36 71.23 0.17 0.13 16 25 O -0.56 -1.82 12.86 -148.98 -1.92 -3.74 16 26 Si 0.75 -2.65 30.18 68.60 2.07 -0.57 16 27 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.06 -0.38 7.65 -2.39 -0.02 -0.40 16 29 H 0.07 -0.56 7.65 -2.39 -0.02 -0.57 16 30 H 0.17 -0.37 4.50 -2.91 -0.01 -0.39 16 31 H 0.07 -0.22 7.66 -2.39 -0.02 -0.24 16 32 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.07 -0.30 7.66 -2.39 -0.02 -0.32 16 34 H 0.41 -0.62 6.72 -92.70 -0.62 -1.24 16 35 H 0.10 0.12 5.73 -2.39 -0.01 0.11 16 36 H 0.05 0.26 8.14 -2.39 -0.02 0.25 16 37 H 0.05 -0.04 6.44 -2.39 -0.02 -0.06 16 38 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.06 -0.19 6.00 -2.38 -0.01 -0.20 16 40 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.05 0.04 8.06 -2.39 -0.02 0.02 16 43 H 0.06 -0.23 7.60 -2.38 -0.02 -0.25 16 44 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.11 -0.41 6.02 -2.39 -0.01 -0.42 16 48 H 0.16 -0.30 3.20 -2.91 -0.01 -0.31 16 49 H 0.08 -0.13 7.82 -2.39 -0.02 -0.14 16 50 H 0.39 -1.88 8.74 -74.06 -0.65 -2.53 16 51 H -0.27 0.00 6.75 99.48 0.67 0.67 16 52 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 Total: 0.00 -21.88 401.65 2.11 -19.77 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -0.31 Total: -7.28 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.81 Total: 12.38 kcal Atomic # 7 Polarization: -2.63 SS G_CDS: -2.31 Total: -4.94 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -3.14 Total: -19.36 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 2.07 Total: -0.57 kcal Total: -21.88 2.11 -19.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_12297780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.115 kcal (2) G-P(sol) polarization free energy of solvation -21.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds