Wall clock time and date at job start Sun Mar 7 2021 13:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47121 * 2 1 4 4 C 1.53001 * 109.47139 * 239.99491 * 2 1 3 5 5 C 1.53002 * 109.46847 * 119.99797 * 2 1 3 6 6 H 1.09000 * 112.90647 * 186.26890 * 5 2 1 7 7 C 1.53781 * 113.61761 * 317.52229 * 5 2 1 8 8 C 1.53776 * 87.08099 * 139.98213 * 7 5 2 9 9 H 1.09004 * 113.61542 * 220.01874 * 8 7 5 10 10 N 1.46501 * 113.61745 * 89.12146 * 8 7 5 11 11 C 1.34775 * 120.00290 * 107.49805 * 10 8 7 12 12 O 1.21583 * 119.99841 * 0.02562 * 11 10 8 13 13 C 1.47568 * 119.99733 * 180.02562 * 11 10 8 14 14 C 1.40213 * 120.11833 * 180.02562 * 13 11 10 15 15 O 1.35645 * 120.00323 * 359.97438 * 14 13 11 16 16 C 1.38810 * 119.99284 * 180.02562 * 14 13 11 17 17 C 1.37771 * 120.24885 * 359.97438 * 16 14 13 18 18 C 1.39841 * 120.24016 * 0.02602 * 17 16 14 19 19 C 1.47826 * 119.99766 * 180.02562 * 18 17 16 20 20 C 1.35932 * 125.93004 * 359.71173 * 19 18 17 21 21 C 1.40968 * 106.74250 * 179.91456 * 20 19 18 22 22 C 1.34707 * 107.02547 * 0.35123 * 21 20 19 23 23 C 1.50698 * 125.66201 * 179.78564 * 22 21 20 24 24 O 1.42900 * 109.47262 * 64.97394 * 23 22 21 25 25 Si 1.86298 * 109.47274 * 184.97687 * 23 22 21 26 26 O 1.34337 * 108.67148 * 359.78254 * 22 21 20 27 27 C 1.39178 * 120.00330 * 359.67641 * 18 17 16 28 28 C 1.53780 * 87.08390 * 334.56574 * 8 7 5 29 29 H 1.09004 * 109.47155 * 306.30420 * 1 2 3 30 30 H 1.09004 * 109.47137 * 66.30397 * 1 2 3 31 31 H 1.09005 * 109.47105 * 186.30113 * 1 2 3 32 32 H 1.09005 * 109.47197 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47494 * 299.99552 * 3 2 1 34 34 H 1.09004 * 109.47561 * 60.00021 * 3 2 1 35 35 H 1.08999 * 109.47168 * 300.00096 * 4 2 1 36 36 H 1.08999 * 109.47067 * 60.00351 * 4 2 1 37 37 H 1.09005 * 109.46871 * 180.02562 * 4 2 1 38 38 H 1.08998 * 113.61574 * 254.53596 * 7 5 2 39 39 H 1.09007 * 113.61098 * 25.34785 * 7 5 2 40 40 H 0.97000 * 119.99465 * 287.50214 * 10 8 7 41 41 H 0.96703 * 114.00042 * 90.00368 * 15 14 13 42 42 H 1.08005 * 119.87883 * 179.97438 * 16 14 13 43 43 H 1.07997 * 119.88095 * 180.02562 * 17 16 14 44 44 H 1.08007 * 126.62935 * 0.02562 * 20 19 18 45 45 H 1.07996 * 126.48460 * 180.13468 * 21 20 19 46 46 H 1.09002 * 109.46972 * 304.97298 * 23 22 21 47 47 H 0.96699 * 114.00159 * 60.00251 * 24 23 22 48 48 H 1.48503 * 110.00135 * 179.97438 * 25 23 22 49 49 H 1.48505 * 109.99733 * 301.31723 * 25 23 22 50 50 H 1.07998 * 120.12339 * 180.31647 * 27 18 17 51 51 H 1.09000 * 113.61848 * 270.88368 * 28 8 7 52 52 H 1.09001 * 113.61227 * 139.97841 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1223 -0.6600 1.3625 7 6 1.2655 -0.3608 2.5280 8 6 1.3630 -1.8467 2.9118 9 1 0.4531 -2.2415 3.3640 10 7 2.5689 -2.1779 3.6748 11 6 2.4788 -2.4562 4.9904 12 8 1.3965 -2.4329 5.5439 13 6 3.6936 -2.7893 5.7591 14 6 3.6027 -3.0798 7.1277 15 8 2.3965 -3.0545 7.7478 16 6 4.7472 -3.3922 7.8484 17 6 5.9749 -3.4188 7.2238 18 6 6.0773 -3.1308 5.8592 19 6 7.3972 -3.1615 5.1943 20 6 8.5845 -3.4477 5.7911 21 6 9.5731 -3.3638 4.7897 22 6 8.9476 -3.0264 3.6453 23 6 9.6123 -2.8196 2.3088 24 8 10.1699 -4.0556 1.8577 25 14 8.3522 -2.2197 1.0747 26 8 7.6329 -2.9049 3.8934 27 6 4.9355 -2.8223 5.1255 28 6 1.4836 -2.1461 1.4082 29 1 -0.3634 0.6085 0.8282 30 1 -0.3633 0.4130 -0.9411 31 1 -0.3633 -1.0215 0.1128 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.8139 0.3004 3.1989 39 1 0.2463 -0.0228 2.3405 40 1 3.4323 -2.1968 3.2331 41 1 1.9316 -3.9024 7.7385 42 1 4.6751 -3.6153 8.9027 43 1 6.8615 -3.6631 7.7901 44 1 8.7401 -3.6937 6.8312 45 1 10.6319 -3.5340 4.9167 46 1 10.4050 -2.0781 2.4081 47 1 9.5200 -4.7630 1.7467 48 1 8.9953 -2.0113 -0.2475 49 1 7.2497 -3.2073 0.9537 50 1 5.0117 -2.6045 4.0704 51 1 0.5236 -2.2976 0.9147 52 1 2.2083 -2.9262 1.1752 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:39:58 Heat of formation + Delta-G solvation = -39.206538 kcal Electronic energy + Delta-G solvation = -34254.232900 eV Core-core repulsion = 29767.222302 eV Total energy + Delta-G solvation = -4487.010597 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.182 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.69971 -41.86506 -40.91542 -39.38156 -38.21122 -37.84317 -36.48640 -34.35230 -33.90052 -32.73505 -32.04286 -30.04897 -28.44206 -28.19068 -26.42576 -26.36614 -26.23537 -24.99074 -23.57051 -22.96607 -21.96619 -21.26853 -21.13738 -19.63990 -19.20093 -19.03284 -18.38504 -17.69132 -17.47280 -17.10708 -16.81456 -16.51026 -16.42729 -16.19832 -15.87509 -15.79373 -15.65800 -15.39845 -15.06633 -14.70485 -14.48788 -14.35974 -14.19260 -13.95310 -13.80596 -13.79344 -13.62439 -13.44080 -13.25817 -13.14767 -13.11684 -12.88667 -12.75895 -12.68212 -12.38650 -12.14003 -12.03618 -11.87755 -11.84674 -11.30522 -11.10244 -11.06529 -10.93962 -10.85329 -10.79194 -10.48465 -10.31956 -10.03405 -8.91057 -4.96303 -0.56810 -0.22115 0.76878 1.15640 1.46633 1.49053 1.70801 1.85222 1.91726 1.98552 2.61556 3.10320 3.21276 3.29997 3.46698 3.52907 3.56587 3.65060 3.76878 3.86675 3.90011 4.01953 4.05488 4.08952 4.20132 4.27552 4.30487 4.35154 4.45161 4.56159 4.63454 4.65542 4.72951 4.74447 4.79225 4.80535 4.83334 4.84654 4.89166 4.98074 4.99629 5.02219 5.04697 5.13348 5.14923 5.16295 5.19934 5.23574 5.25938 5.42351 5.44620 5.47293 5.50334 5.52522 5.68832 5.98428 6.34636 6.40239 6.71507 7.10385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.091 4.091 6 H 0.095 0.905 7 C -0.148 4.148 8 C 0.113 3.887 9 H 0.082 0.918 10 N -0.698 5.698 11 C 0.558 3.442 12 O -0.559 6.559 13 C -0.179 4.179 14 C 0.164 3.836 15 O -0.495 6.495 16 C -0.146 4.146 17 C -0.044 4.044 18 C -0.041 4.041 19 C 0.023 3.977 20 C -0.189 4.189 21 C -0.181 4.181 22 C -0.054 4.054 23 C -0.038 4.038 24 O -0.536 6.536 25 Si 0.766 3.234 26 O -0.173 6.173 27 C -0.051 4.051 28 C -0.134 4.134 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.410 0.590 41 H 0.410 0.590 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.174 0.826 45 H 0.162 0.838 46 H 0.152 0.848 47 H 0.390 0.610 48 H -0.285 1.285 49 H -0.283 1.283 50 H 0.147 0.853 51 H 0.104 0.896 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -0.500 -1.112 3.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 C -0.199 4.199 4 C -0.198 4.198 5 C -0.109 4.109 6 H 0.114 0.886 7 C -0.187 4.187 8 C 0.008 3.992 9 H 0.101 0.899 10 N -0.350 5.350 11 C 0.347 3.653 12 O -0.438 6.438 13 C -0.183 4.183 14 C 0.117 3.883 15 O -0.308 6.308 16 C -0.164 4.164 17 C -0.062 4.062 18 C -0.041 4.041 19 C -0.026 4.026 20 C -0.208 4.208 21 C -0.200 4.200 22 C -0.103 4.103 23 C -0.147 4.147 24 O -0.344 6.344 25 Si 0.669 3.331 26 O -0.071 6.071 27 C -0.070 4.070 28 C -0.172 4.172 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.247 0.753 41 H 0.271 0.729 42 H 0.182 0.818 43 H 0.184 0.816 44 H 0.192 0.808 45 H 0.180 0.820 46 H 0.169 0.831 47 H 0.240 0.760 48 H -0.212 1.212 49 H -0.209 1.209 50 H 0.165 0.835 51 H 0.123 0.877 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.705 0.350 -1.587 3.155 hybrid contribution 0.344 -1.655 -0.051 1.691 sum 3.049 -1.305 -1.638 3.699 Atomic orbital electron populations 1.22052 0.94772 1.02151 1.01664 1.20396 0.95455 0.95261 0.94532 1.21851 1.01165 0.95359 1.01522 1.21847 1.01108 1.00295 0.96578 1.22610 0.99756 0.94935 0.93614 0.88639 1.23565 1.02134 0.95663 0.97311 1.21876 0.88043 0.96908 0.92410 0.89933 1.45529 1.11141 1.70028 1.08338 1.18276 0.88351 0.76484 0.82228 1.90803 1.29887 1.53006 1.70076 1.20246 0.93654 1.09943 0.94445 1.18890 0.86840 0.94005 0.88544 1.84706 1.29883 1.39335 1.76903 1.21578 0.90784 1.01863 1.02200 1.21425 0.98774 0.94034 0.92000 1.17700 0.88209 1.04594 0.93600 1.20421 0.94514 1.06160 0.81525 1.22158 0.90646 1.05920 1.02061 1.21799 1.01680 1.04813 0.91725 1.23039 0.80566 1.07546 0.99179 1.24530 1.05787 0.90685 0.93706 1.86643 1.38608 1.21823 1.87368 0.93701 0.75321 0.88129 0.75917 1.83903 1.26512 1.69703 1.26962 1.21384 0.89916 0.95302 1.00397 1.23425 1.03237 0.97529 0.93004 0.92469 0.92810 0.91949 0.92323 0.92843 0.93013 0.92416 0.92894 0.92461 0.92237 0.88362 0.75261 0.72908 0.81807 0.81646 0.80813 0.82046 0.83062 0.76048 1.21156 1.20946 0.83530 0.87739 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 7.53 71.98 0.54 0.91 16 2 C -0.06 0.17 0.68 -52.18 -0.04 0.14 16 3 C -0.14 0.32 8.42 71.98 0.61 0.93 16 4 C -0.14 0.46 8.33 71.98 0.60 1.06 16 5 C -0.09 0.31 2.91 -10.27 -0.03 0.28 16 6 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 7 C -0.15 0.03 7.04 31.12 0.22 0.25 16 8 C 0.11 0.13 4.32 45.52 0.20 0.33 16 9 H 0.08 0.46 7.47 -2.38 -0.02 0.45 16 10 N -0.70 -0.82 5.21 -443.18 -2.31 -3.13 16 11 C 0.56 3.95 7.76 86.71 0.67 4.62 16 12 O -0.56 -8.19 14.74 17.01 0.25 -7.94 16 13 C -0.18 -0.64 5.88 -20.04 -0.12 -0.76 16 14 C 0.16 0.54 6.72 22.89 0.15 0.69 16 15 O -0.49 -2.78 11.55 -68.61 -0.79 -3.57 16 16 C -0.15 0.31 9.96 22.30 0.22 0.54 16 17 C -0.04 0.17 9.54 22.55 0.22 0.39 16 18 C -0.04 0.04 5.87 -20.13 -0.12 -0.08 16 19 C 0.02 0.00 7.03 24.27 0.17 0.17 16 20 C -0.19 0.33 10.26 22.40 0.23 0.56 16 21 C -0.18 0.13 10.78 22.13 0.24 0.37 16 22 C -0.05 0.04 6.20 24.87 0.15 0.19 16 23 C -0.04 0.11 2.98 71.24 0.21 0.33 16 24 O -0.54 0.22 12.88 -148.98 -1.92 -1.70 16 25 Si 0.77 -2.65 32.11 68.60 2.20 -0.45 16 26 O -0.17 -0.06 8.80 -6.44 -0.06 -0.11 16 27 C -0.05 0.02 9.20 22.79 0.21 0.23 16 28 C -0.13 0.44 6.46 31.12 0.20 0.65 16 29 H 0.06 -0.10 6.43 -2.39 -0.02 -0.12 16 30 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.06 -0.19 6.00 -2.38 -0.01 -0.21 16 32 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 33 H 0.05 -0.10 8.14 -2.39 -0.02 -0.11 16 34 H 0.05 -0.06 8.05 -2.39 -0.02 -0.08 16 35 H 0.06 -0.20 7.61 -2.39 -0.02 -0.22 16 36 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.10 -0.03 5.72 -2.38 -0.01 -0.05 16 40 H 0.41 -1.54 6.73 -92.71 -0.62 -2.16 16 41 H 0.41 -0.63 9.06 -74.06 -0.67 -1.30 16 42 H 0.16 -1.03 8.06 -2.91 -0.02 -1.05 16 43 H 0.17 -1.56 6.96 -2.91 -0.02 -1.58 16 44 H 0.17 -1.17 7.25 -2.91 -0.02 -1.19 16 45 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 46 H 0.15 -0.94 7.96 -2.39 -0.02 -0.96 16 47 H 0.39 -2.16 8.70 -74.06 -0.64 -2.81 16 48 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 49 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 50 H 0.15 -0.58 6.24 -2.91 -0.02 -0.60 16 51 H 0.10 -0.41 6.02 -2.39 -0.01 -0.42 16 52 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: 0.00 -20.12 418.80 1.00 -19.12 By element: Atomic # 1 Polarization: -13.08 SS G_CDS: -0.92 Total: -13.99 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 4.54 Total: 11.79 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -2.31 Total: -3.13 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -2.52 Total: -13.33 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 2.20 Total: -0.45 kcal Total: -20.12 1.00 -19.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.088 kcal (2) G-P(sol) polarization free energy of solvation -20.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds