Wall clock time and date at job start Sun Mar 7 2021 13:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46982 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00334 * 2 1 3 5 5 C 1.52992 * 109.47480 * 120.00345 * 2 1 3 6 6 H 1.09008 * 112.85110 * 292.52395 * 5 2 1 7 7 C 1.53788 * 113.61675 * 63.71659 * 5 2 1 8 8 C 1.53780 * 87.08087 * 139.98462 * 7 5 2 9 9 H 1.08999 * 113.61252 * 219.93711 * 8 7 5 10 10 N 1.46498 * 113.61820 * 89.11741 * 8 7 5 11 11 C 1.34773 * 120.00270 * 154.99884 * 10 8 7 12 12 O 1.21513 * 119.99705 * 0.02562 * 11 10 8 13 13 C 1.48164 * 120.00171 * 180.02562 * 11 10 8 14 14 N 1.32718 * 119.72438 * 359.97180 * 13 11 10 15 15 C 1.31524 * 121.64367 * 180.02562 * 14 13 11 16 16 C 1.38558 * 120.90380 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.32223 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46840 * 245.02592 * 17 16 15 19 19 Si 1.86302 * 109.47005 * 5.02656 * 17 16 15 20 20 C 1.38628 * 119.35194 * 0.02562 * 16 15 14 21 21 C 1.38591 * 118.48906 * 359.97438 * 20 16 15 22 22 C 1.53783 * 87.08362 * 334.56925 * 8 7 5 23 23 H 1.09004 * 109.47285 * 299.99328 * 1 2 3 24 24 H 1.08994 * 109.47807 * 59.99600 * 1 2 3 25 25 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47018 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47343 * 300.00393 * 3 2 1 28 28 H 1.09004 * 109.47086 * 60.00270 * 3 2 1 29 29 H 1.08994 * 109.46754 * 293.49279 * 4 2 1 30 30 H 1.09007 * 109.46935 * 53.48986 * 4 2 1 31 31 H 1.08995 * 109.47337 * 173.49192 * 4 2 1 32 32 H 1.08996 * 113.61158 * 25.43335 * 7 5 2 33 33 H 1.08999 * 113.61494 * 254.53337 * 7 5 2 34 34 H 0.97004 * 119.99582 * 335.00580 * 10 8 7 35 35 H 1.08001 * 119.54753 * 180.02562 * 15 14 13 36 36 H 1.09001 * 109.46954 * 125.02712 * 17 16 15 37 37 H 0.96696 * 113.99885 * 60.00184 * 18 17 16 38 38 H 1.48497 * 109.99813 * 180.02562 * 19 17 16 39 39 H 1.48507 * 109.99906 * 301.31461 * 19 17 16 40 40 H 1.07993 * 120.75373 * 179.97438 * 20 16 15 41 41 H 1.07992 * 120.46967 * 179.73055 * 21 20 16 42 42 H 1.08994 * 113.61675 * 139.98145 * 22 8 7 43 43 H 1.08997 * 113.61576 * 270.89150 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 1.8184 -0.1814 2.1698 7 6 1.6572 -2.2098 1.3005 8 6 3.0675 -2.4725 1.8545 9 1 3.5330 -3.3732 1.4543 10 7 3.1490 -2.3909 3.3149 11 6 4.1170 -3.0577 3.9742 12 8 4.9225 -3.7263 3.3572 13 6 4.1991 -2.9755 5.4513 14 7 3.3168 -2.2432 6.1197 15 6 3.3548 -2.1433 7.4306 16 6 4.3245 -2.8046 8.1668 17 6 4.3562 -2.6805 9.6684 18 8 5.5552 -2.0123 10.0659 19 14 2.8795 -1.6999 10.2417 20 6 5.2660 -3.5806 7.5086 21 6 5.2017 -3.6676 6.1270 22 6 3.5031 -1.1822 1.1401 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.7748 -1.7769 -1.1930 30 1 1.5846 -0.2789 -2.1355 31 1 3.1237 -0.6215 -1.3095 32 1 1.4847 -2.6504 0.3186 33 1 0.8608 -2.4316 2.0108 34 1 2.5061 -1.8569 3.8074 35 1 2.6195 -1.5382 7.9401 36 1 4.3286 -3.6741 10.1158 37 1 5.6469 -1.1204 9.7039 38 1 2.8994 -1.5699 11.7209 39 1 2.8886 -0.3541 9.6139 40 1 6.0320 -4.1055 8.0600 41 1 5.9215 -4.2596 5.5815 42 1 4.1968 -0.5745 1.7210 43 1 3.8352 -1.3419 0.1143 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:40:06 Heat of formation + Delta-G solvation = -8.848858 kcal Electronic energy + Delta-G solvation = -23185.674221 eV Core-core repulsion = 19812.134545 eV Total energy + Delta-G solvation = -3373.539676 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.03441 -41.24779 -39.82903 -38.01671 -36.57579 -34.30551 -33.30645 -32.88132 -28.45009 -28.22434 -28.00948 -26.24875 -25.90381 -25.04446 -23.86861 -22.12247 -21.18037 -19.35020 -19.08383 -18.66099 -17.75305 -16.97372 -16.65881 -16.56810 -16.33536 -16.19068 -15.99487 -15.72215 -15.18599 -15.09457 -14.50836 -14.43403 -14.37641 -14.17545 -13.78861 -13.55089 -13.44571 -13.18432 -12.77424 -12.69229 -12.63912 -12.39221 -12.15165 -12.01621 -11.85120 -11.52595 -11.24563 -11.10497 -11.09322 -10.88240 -10.69782 -10.67234 -10.40611 -10.06312 -4.92667 -0.62489 0.06334 1.23886 1.50210 1.58749 1.90418 1.96480 2.63163 2.91398 3.32996 3.48765 3.52604 3.56528 3.63943 3.75577 3.78385 3.86025 3.90926 4.08676 4.11015 4.27810 4.30685 4.46566 4.55516 4.58997 4.69698 4.74999 4.79459 4.82237 4.83674 4.89409 4.97512 4.98034 5.00140 5.04390 5.14618 5.15923 5.22791 5.25542 5.36210 5.41664 5.46688 5.52382 5.67715 6.25272 6.41489 6.59448 7.01585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.149 4.149 5 C -0.090 4.090 6 H 0.090 0.910 7 C -0.131 4.131 8 C 0.108 3.892 9 H 0.086 0.914 10 N -0.681 5.681 11 C 0.570 3.430 12 O -0.567 6.567 13 C 0.064 3.936 14 N -0.460 5.460 15 C 0.099 3.901 16 C -0.139 4.139 17 C -0.078 4.078 18 O -0.544 6.544 19 Si 0.766 3.234 20 C -0.052 4.052 21 C -0.116 4.116 22 C -0.148 4.148 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.419 0.581 35 H 0.186 0.814 36 H 0.137 0.863 37 H 0.388 0.612 38 H -0.299 1.299 39 H -0.274 1.274 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.057 0.943 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 1.050 1.342 4.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.206 4.206 5 C -0.109 4.109 6 H 0.109 0.891 7 C -0.169 4.169 8 C 0.003 3.997 9 H 0.105 0.895 10 N -0.331 5.331 11 C 0.355 3.645 12 O -0.446 6.446 13 C -0.074 4.074 14 N -0.171 5.171 15 C -0.060 4.060 16 C -0.141 4.141 17 C -0.188 4.188 18 O -0.352 6.352 19 Si 0.670 3.330 20 C -0.077 4.077 21 C -0.136 4.136 22 C -0.186 4.186 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.257 0.743 35 H 0.202 0.798 36 H 0.155 0.845 37 H 0.238 0.762 38 H -0.227 1.227 39 H -0.200 1.200 40 H 0.180 0.820 41 H 0.166 0.834 42 H 0.076 0.924 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.669 1.173 1.077 4.933 hybrid contribution 1.629 0.480 0.453 1.758 sum -3.040 1.653 1.530 3.784 Atomic orbital electron populations 1.21839 0.94139 1.02080 1.01693 1.20404 0.95699 0.95073 0.94516 1.21853 1.00789 0.95556 1.01695 1.22046 1.01036 1.00725 0.96779 1.22582 0.94871 0.95084 0.98342 0.89147 1.23404 0.94864 0.96155 1.02473 1.21989 0.99323 0.99294 0.79127 0.89540 1.45474 1.31347 1.49100 1.07212 1.18121 0.81033 0.79036 0.86266 1.90784 1.42184 1.42828 1.68772 1.21058 0.94871 0.97783 0.93645 1.67513 1.23519 1.15660 1.10406 1.23060 0.97176 0.96959 0.88819 1.21682 0.96410 0.97633 0.98379 1.25219 0.97348 1.05491 0.90699 1.86618 1.40055 1.33828 1.74676 0.94067 0.81744 0.79748 0.77397 1.21751 0.97625 0.95383 0.92989 1.22282 0.97885 0.98074 0.95403 1.23581 0.97214 0.96302 1.01535 0.92655 0.92865 0.92152 0.93061 0.92736 0.92722 0.91769 0.92745 0.92455 0.87481 0.90135 0.74336 0.79778 0.84516 0.76242 1.22697 1.20031 0.82026 0.83392 0.92448 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.41 8.32 71.98 0.60 1.01 16 2 C -0.06 0.15 0.68 -52.18 -0.04 0.11 16 3 C -0.14 0.21 8.43 71.98 0.61 0.81 16 4 C -0.15 0.38 7.49 71.98 0.54 0.92 16 5 C -0.09 0.24 2.91 -10.27 -0.03 0.21 16 6 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 7 C -0.13 0.39 6.40 31.12 0.20 0.59 16 8 C 0.11 0.17 4.32 45.52 0.20 0.37 16 9 H 0.09 0.46 7.46 -2.39 -0.02 0.44 16 10 N -0.68 -1.87 5.25 -442.61 -2.32 -4.20 16 11 C 0.57 4.45 7.81 86.88 0.68 5.13 16 12 O -0.57 -8.17 15.92 -3.76 -0.06 -8.23 16 13 C 0.06 0.30 6.75 41.91 0.28 0.58 16 14 N -0.46 -0.81 9.54 -184.91 -1.76 -2.58 16 15 C 0.10 -0.25 9.84 84.82 0.83 0.59 16 16 C -0.14 0.46 5.37 -19.69 -0.11 0.35 16 17 C -0.08 0.41 2.82 71.24 0.20 0.61 16 18 O -0.54 0.93 12.84 -148.98 -1.91 -0.99 16 19 Si 0.77 -4.76 29.91 68.60 2.05 -2.71 16 20 C -0.05 0.08 9.83 22.45 0.22 0.30 16 21 C -0.12 -0.30 9.63 22.61 0.22 -0.08 16 22 C -0.15 -0.02 7.09 31.12 0.22 0.20 16 23 H 0.05 -0.16 8.14 -2.38 -0.02 -0.17 16 24 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.06 -0.21 7.56 -2.39 -0.02 -0.23 16 26 H 0.05 -0.03 8.10 -2.39 -0.02 -0.05 16 27 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 28 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.06 -0.22 6.05 -2.39 -0.01 -0.23 16 30 H 0.05 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.06 -0.11 6.46 -2.39 -0.02 -0.13 16 32 H 0.11 -0.44 6.09 -2.39 -0.01 -0.46 16 33 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.42 -0.16 8.03 -92.71 -0.74 -0.91 16 35 H 0.19 -1.39 4.86 -2.91 -0.01 -1.40 16 36 H 0.14 -1.02 7.96 -2.39 -0.02 -1.04 16 37 H 0.39 -2.72 8.70 -74.06 -0.64 -3.37 16 38 H -0.30 -0.62 7.11 99.48 0.71 0.09 16 39 H -0.27 0.81 7.01 99.48 0.70 1.51 16 40 H 0.16 -0.77 8.06 -2.91 -0.02 -0.79 16 41 H 0.15 0.43 7.64 -2.91 -0.02 0.41 16 42 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.10 -0.06 5.69 -2.39 -0.01 -0.07 16 Total: 0.00 -14.59 343.07 0.28 -14.30 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -0.33 Total: -7.30 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 4.63 Total: 11.69 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -4.09 Total: -6.77 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -1.97 Total: -9.21 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.05 Total: -2.71 kcal Total: -14.59 0.28 -14.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.455 kcal (2) G-P(sol) polarization free energy of solvation -14.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds