Wall clock time and date at job start Sun Mar 7 2021 13:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47407 * 2 1 4 4 C 1.53000 * 109.47107 * 119.99735 * 2 1 3 5 5 C 1.53004 * 109.47297 * 239.99375 * 2 1 3 6 6 H 1.08999 * 112.85062 * 187.46668 * 5 2 1 7 7 C 1.53776 * 113.61584 * 318.66946 * 5 2 1 8 8 C 1.53953 * 87.02087 * 139.94690 * 7 5 2 9 9 H 1.09001 * 113.74742 * 220.05431 * 8 7 5 10 10 N 1.46502 * 113.53846 * 89.18551 * 8 7 5 11 11 C 1.34777 * 120.00071 * 107.50175 * 10 8 7 12 12 O 1.21593 * 119.99742 * 0.02562 * 11 10 8 13 13 C 1.47559 * 120.00201 * 180.02562 * 11 10 8 14 14 C 1.39829 * 120.00219 * 359.72638 * 13 11 10 15 15 C 1.36561 * 120.00101 * 179.78329 * 14 13 11 16 16 C 1.39818 * 119.99728 * 0.47162 * 15 14 13 17 17 C 1.47568 * 119.99906 * 179.75918 * 16 15 14 18 18 C 1.34974 * 125.27210 * 0.02784 * 17 16 15 19 19 C 1.37804 * 114.70109 * 179.97438 * 18 17 16 20 20 C 1.33735 * 115.07883 * 359.97438 * 19 18 17 21 21 C 1.50702 * 125.12039 * 180.02562 * 20 19 18 22 22 O 1.42903 * 109.47066 * 299.99974 * 21 20 19 23 23 Si 1.86298 * 109.47341 * 179.97438 * 21 20 19 24 24 S 1.75862 * 109.76306 * 359.77161 * 20 19 18 25 25 C 1.39827 * 120.00594 * 359.78315 * 16 15 14 26 26 C 1.36555 * 119.99775 * 359.97438 * 25 16 15 27 27 C 1.53781 * 113.61051 * 56.27876 * 5 2 1 28 28 H 1.09001 * 109.46571 * 66.49973 * 1 2 3 29 29 H 1.08999 * 109.47045 * 306.50197 * 1 2 3 30 30 H 1.08998 * 109.47159 * 186.49883 * 1 2 3 31 31 H 1.09000 * 109.47349 * 59.99591 * 3 2 1 32 32 H 1.09001 * 109.47068 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47115 * 299.99525 * 3 2 1 34 34 H 1.09007 * 109.46878 * 60.00015 * 4 2 1 35 35 H 1.09001 * 109.47392 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47448 * 300.00462 * 4 2 1 37 37 H 1.08996 * 113.61584 * 254.52360 * 7 5 2 38 38 H 1.08999 * 113.61397 * 25.42930 * 7 5 2 39 39 H 0.97000 * 120.00102 * 287.50916 * 10 8 7 40 40 H 1.08002 * 119.99650 * 0.02902 * 14 13 11 41 41 H 1.07994 * 119.99891 * 180.23550 * 15 14 13 42 42 H 1.08002 * 122.65313 * 359.93544 * 18 17 16 43 43 H 1.08000 * 122.45829 * 179.97438 * 19 18 17 44 44 H 1.09001 * 109.46948 * 59.99516 * 21 20 19 45 45 H 0.96711 * 113.99372 * 300.00145 * 22 21 20 46 46 H 1.48509 * 110.00053 * 58.67779 * 23 21 20 47 47 H 1.48497 * 109.99994 * 179.97438 * 23 21 20 48 48 H 1.08002 * 119.99937 * 180.02562 * 25 16 15 49 49 H 1.07999 * 120.00016 * 180.02562 * 26 25 16 50 50 H 1.09002 * 113.61394 * 334.55888 * 27 5 2 51 51 H 1.08999 * 113.62131 * 105.46760 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7214 -1.2492 6 1 3.1201 -0.8680 -1.2420 7 6 1.2479 -1.9940 -1.5922 8 6 1.3664 -1.5731 -3.0684 9 1 0.4599 -1.7466 -3.6484 10 7 2.5702 -2.0849 -3.7279 11 6 2.4717 -3.0769 -4.6349 12 8 1.3835 -3.5467 -4.9062 13 6 3.6843 -3.5928 -5.2988 14 6 4.9351 -3.0487 -4.9911 15 6 6.0578 -3.5291 -5.6023 16 6 5.9555 -4.5585 -6.5429 17 6 7.1682 -5.0741 -7.2073 18 6 8.4246 -4.6323 -6.9881 19 6 9.3965 -5.2698 -7.7284 20 6 8.9482 -6.2266 -8.5482 21 6 9.8109 -7.0642 -9.4567 22 8 10.5017 -6.2141 -10.3746 23 14 8.7396 -8.2595 -10.4022 24 16 7.2013 -6.3652 -8.4012 25 6 4.7042 -5.0991 -6.8546 26 6 3.5821 -4.6220 -6.2399 27 6 1.5079 -0.1273 -2.5640 28 1 -0.3632 0.4098 -0.9425 29 1 -0.3633 0.6113 0.8261 30 1 -0.3633 -1.0210 0.1163 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6766 -1.7489 1.2493 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -0.2074 2.1393 37 1 1.7792 -2.9160 -1.3562 38 1 0.2247 -1.9859 -1.2167 39 1 3.4383 -1.7100 -3.5117 40 1 5.0136 -2.2511 -4.2672 41 1 7.0242 -3.1114 -5.3618 42 1 8.6504 -3.8412 -6.2884 43 1 10.4433 -5.0155 -7.6520 44 1 10.5350 -7.6191 -8.8602 45 1 9.9183 -5.6888 -10.9393 46 1 7.7270 -7.5167 -11.1949 47 1 9.5785 -9.0910 -11.3023 48 1 4.6254 -5.8945 -7.5810 49 1 2.6156 -5.0399 -6.4803 50 1 0.5558 0.3920 -2.4546 51 1 2.2487 0.4556 -3.1113 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_13308390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:40:25 Heat of formation + Delta-G solvation = 15.283410 kcal Electronic energy + Delta-G solvation = -29988.754786 eV Core-core repulsion = 25946.859922 eV Total energy + Delta-G solvation = -4041.894865 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.155 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.78808 -40.74665 -39.69284 -38.99692 -37.48231 -36.54967 -34.22321 -33.14462 -32.16331 -30.45559 -28.43993 -28.19111 -27.42918 -26.23632 -25.92864 -24.62555 -23.95260 -23.40537 -21.88678 -21.20093 -20.28279 -19.23087 -19.06782 -18.63207 -17.69236 -17.16029 -16.66428 -16.47341 -16.33871 -16.21866 -16.16959 -16.02581 -15.54155 -15.48694 -15.10288 -15.02181 -14.57566 -14.45663 -14.35728 -14.16257 -13.80924 -13.78110 -13.63101 -13.52905 -13.33382 -13.14861 -13.08401 -12.75492 -12.68293 -12.54854 -12.42365 -12.38322 -12.10112 -11.99221 -11.83974 -11.52517 -11.33831 -11.10954 -11.08695 -10.88266 -10.85588 -10.65430 -10.19888 -10.10130 -9.55055 -9.03499 -5.09033 -0.89702 0.24590 0.33093 0.39033 0.76473 1.20187 1.52124 1.55380 1.84196 1.94782 2.01577 2.81677 3.30256 3.40626 3.53408 3.57511 3.64583 3.69631 3.73530 3.78517 3.83880 3.88629 4.09780 4.19055 4.28656 4.30879 4.31543 4.41132 4.51947 4.55391 4.57271 4.61649 4.74037 4.76078 4.80376 4.84690 4.85686 4.91381 4.98771 5.00797 5.01804 5.05571 5.10363 5.15626 5.17153 5.21163 5.24618 5.26444 5.28877 5.31787 5.43231 5.47834 5.48204 5.53289 5.69084 5.73058 6.36894 6.43706 7.10873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.088 4.088 6 H 0.097 0.903 7 C -0.150 4.150 8 C 0.110 3.890 9 H 0.079 0.921 10 N -0.693 5.693 11 C 0.558 3.442 12 O -0.581 6.581 13 C -0.151 4.151 14 C -0.068 4.068 15 C -0.108 4.108 16 C 0.007 3.993 17 C -0.160 4.160 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.218 4.218 21 C -0.033 4.033 22 O -0.539 6.539 23 Si 0.709 3.291 24 S 0.122 5.878 25 C -0.128 4.128 26 C -0.064 4.064 27 C -0.133 4.133 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.414 0.586 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.155 0.845 44 H 0.140 0.860 45 H 0.388 0.612 46 H -0.267 1.267 47 H -0.272 1.272 48 H 0.135 0.865 49 H 0.129 0.871 50 H 0.102 0.898 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 2.890 3.739 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.107 4.107 6 H 0.115 0.885 7 C -0.188 4.188 8 C 0.005 3.995 9 H 0.098 0.902 10 N -0.344 5.344 11 C 0.347 3.653 12 O -0.462 6.462 13 C -0.154 4.154 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.005 3.995 17 C -0.277 4.277 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.336 4.336 21 C -0.145 4.145 22 O -0.347 6.347 23 Si 0.611 3.389 24 S 0.390 5.610 25 C -0.147 4.147 26 C -0.083 4.083 27 C -0.170 4.170 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.253 0.747 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.184 0.816 43 H 0.172 0.828 44 H 0.157 0.843 45 H 0.237 0.763 46 H -0.192 1.192 47 H -0.197 1.197 48 H 0.152 0.848 49 H 0.146 0.854 50 H 0.121 0.879 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.993 1.095 2.349 3.269 hybrid contribution 1.271 1.722 0.016 2.140 sum 3.263 2.817 2.365 4.917 Atomic orbital electron populations 1.22047 0.94851 1.01720 1.02011 1.20414 0.95408 0.95474 0.94480 1.21833 1.01120 0.94953 1.01792 1.21847 1.01051 0.99998 0.96939 1.22591 0.99756 0.94809 0.93515 0.88470 1.23609 1.02091 0.98183 0.94924 1.21945 0.88163 0.96135 0.93308 0.90241 1.45470 1.10996 1.36796 1.41168 1.18508 0.88551 0.79355 0.78881 1.90779 1.30198 1.60007 1.65244 1.20007 0.93463 1.00645 1.01308 1.21243 0.90264 0.98666 0.98433 1.21191 1.00337 0.95749 0.95515 1.18463 0.90321 0.95442 0.95236 1.23170 0.96642 1.03266 1.04649 1.20640 0.90182 1.02151 1.01628 1.20189 1.01847 0.96132 0.95884 1.25099 0.96589 1.05482 1.06414 1.24453 1.00361 0.96422 0.93314 1.86603 1.36971 1.58873 1.52271 0.94477 0.78822 0.80906 0.84681 1.84219 1.03462 1.34682 1.38662 1.21033 0.91434 1.01107 1.01127 1.20942 0.99285 0.94339 0.93693 1.23407 1.03330 0.94228 0.96059 0.91941 0.92881 0.92554 0.93061 0.92392 0.92263 0.93083 0.92433 0.92933 0.92138 0.88503 0.74714 0.82149 0.82133 0.81606 0.82781 0.84261 0.76278 1.19237 1.19722 0.84768 0.85354 0.87949 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 7.49 71.98 0.54 0.99 16 2 C -0.06 0.22 0.68 -52.18 -0.04 0.19 16 3 C -0.14 0.59 8.31 71.98 0.60 1.19 16 4 C -0.14 0.40 8.43 71.98 0.61 1.01 16 5 C -0.09 0.42 2.91 -10.27 -0.03 0.39 16 6 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 7 C -0.15 0.18 7.09 31.18 0.22 0.40 16 8 C 0.11 0.02 4.33 45.58 0.20 0.22 16 9 H 0.08 0.43 7.46 -2.39 -0.02 0.41 16 10 N -0.69 0.41 5.21 -442.88 -2.31 -1.90 16 11 C 0.56 3.50 7.76 86.70 0.67 4.17 16 12 O -0.58 -8.88 15.93 -4.01 -0.06 -8.95 16 13 C -0.15 -0.41 5.88 -20.05 -0.12 -0.53 16 14 C -0.07 0.26 9.48 22.26 0.21 0.47 16 15 C -0.11 0.41 9.48 22.26 0.21 0.62 16 16 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 17 C -0.16 0.02 6.37 23.98 0.15 0.18 16 18 C -0.12 0.29 9.64 21.42 0.21 0.50 16 19 C -0.11 0.18 10.00 21.14 0.21 0.39 16 20 C -0.22 0.21 5.73 24.66 0.14 0.36 16 21 C -0.03 0.06 2.96 71.24 0.21 0.27 16 22 O -0.54 -0.47 12.86 -148.98 -1.92 -2.39 16 23 Si 0.71 -0.92 30.96 68.60 2.12 1.20 16 24 S 0.12 -0.03 19.46 -56.49 -1.10 -1.13 16 25 C -0.13 -0.26 9.54 22.26 0.21 -0.05 16 26 C -0.06 -0.28 9.53 22.26 0.21 -0.07 16 27 C -0.13 0.61 6.41 31.12 0.20 0.81 16 28 H 0.06 -0.23 6.05 -2.39 -0.01 -0.24 16 29 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.06 -0.12 6.46 -2.39 -0.02 -0.14 16 31 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.06 -0.27 7.57 -2.39 -0.02 -0.29 16 34 H 0.05 -0.09 8.10 -2.38 -0.02 -0.11 16 35 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.10 -0.09 5.69 -2.39 -0.01 -0.10 16 39 H 0.41 -2.94 6.71 -92.71 -0.62 -3.56 16 40 H 0.16 -1.74 6.38 -2.91 -0.02 -1.76 16 41 H 0.16 -1.51 6.74 -2.91 -0.02 -1.53 16 42 H 0.17 -1.25 6.88 -2.91 -0.02 -1.27 16 43 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 44 H 0.14 -0.57 7.96 -2.39 -0.02 -0.59 16 45 H 0.39 -1.64 8.70 -74.05 -0.64 -2.29 16 46 H -0.27 -0.78 7.11 99.48 0.71 -0.08 16 47 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 48 H 0.13 0.03 7.26 -2.91 -0.02 0.01 16 49 H 0.13 0.79 7.64 -2.91 -0.02 0.77 16 50 H 0.10 -0.49 6.09 -2.39 -0.01 -0.50 16 51 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: 0.00 -17.33 415.40 0.98 -16.36 By element: Atomic # 1 Polarization: -14.31 SS G_CDS: -0.27 Total: -14.57 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 4.50 Total: 11.38 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -2.31 Total: -1.90 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.98 Total: -11.34 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.12 Total: 1.20 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.10 Total: -1.13 kcal Total: -17.33 0.98 -16.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13308390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.639 kcal (2) G-P(sol) polarization free energy of solvation -17.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds