Wall clock time and date at job start Sun Mar 7 2021 13:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 C 1.53004 * 109.46938 * 119.99524 * 2 1 3 5 5 C 1.53001 * 109.47639 * 239.99756 * 2 1 3 6 6 H 1.09001 * 112.84494 * 292.52400 * 5 2 1 7 7 C 1.53776 * 113.61073 * 63.71378 * 5 2 1 8 8 C 1.53789 * 87.07890 * 139.98768 * 7 5 2 9 9 H 1.09003 * 113.61350 * 220.02512 * 8 7 5 10 10 N 1.46493 * 113.61479 * 89.20064 * 8 7 5 11 11 C 1.34778 * 119.99867 * 155.00235 * 10 8 7 12 12 O 1.21587 * 120.00225 * 0.02562 * 11 10 8 13 13 C 1.47538 * 119.99865 * 179.97438 * 11 10 8 14 14 C 1.40137 * 120.18659 * 179.72310 * 13 11 10 15 15 O 1.35648 * 120.15620 * 0.02562 * 14 13 11 16 16 C 1.38712 * 119.69332 * 179.77587 * 14 13 11 17 17 C 1.38052 * 120.08623 * 0.50176 * 16 14 13 18 18 C 1.50705 * 119.80575 * 179.72372 * 17 16 14 19 19 O 1.42901 * 109.46997 * 65.02300 * 18 17 16 20 20 Si 1.86299 * 109.47155 * 185.02520 * 18 17 16 21 21 C 1.38550 * 120.38859 * 359.75135 * 17 16 14 22 22 C 1.37778 * 120.30318 * 359.97438 * 21 17 16 23 23 C 1.53778 * 113.61729 * 161.21425 * 5 2 1 24 24 H 1.08993 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47197 * 60.00247 * 1 2 3 26 26 H 1.09001 * 109.47516 * 300.00256 * 1 2 3 27 27 H 1.08997 * 109.47510 * 53.48571 * 3 2 1 28 28 H 1.09002 * 109.47666 * 173.48706 * 3 2 1 29 29 H 1.08997 * 109.47019 * 293.48686 * 3 2 1 30 30 H 1.09004 * 109.47004 * 60.00031 * 4 2 1 31 31 H 1.08999 * 109.47092 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47197 * 300.00416 * 4 2 1 33 33 H 1.08998 * 113.61851 * 254.53131 * 7 5 2 34 34 H 1.08994 * 113.61725 * 25.35717 * 7 5 2 35 35 H 0.96997 * 120.00240 * 334.99459 * 10 8 7 36 36 H 0.96696 * 114.00090 * 89.99758 * 15 14 13 37 37 H 1.08003 * 119.95702 * 180.22816 * 16 14 13 38 38 H 1.09004 * 109.46774 * 305.02716 * 18 17 16 39 39 H 0.96702 * 113.99821 * 60.00369 * 19 18 17 40 40 H 1.48506 * 110.00068 * 58.68132 * 20 18 17 41 41 H 1.48500 * 110.00120 * 180.02562 * 20 18 17 42 42 H 1.07998 * 119.84350 * 180.02562 * 21 17 16 43 43 H 1.07999 * 120.04849 * 179.97438 * 22 21 17 44 44 H 1.09000 * 113.61433 * 334.56919 * 23 5 2 45 45 H 1.09004 * 113.61326 * 105.46700 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 1 1.8184 -1.7885 -1.2418 7 6 1.6571 -0.0216 -2.5639 8 6 3.0675 -0.3701 -3.0685 9 1 3.5336 0.4273 -3.6472 10 7 3.1485 -1.6749 -3.7296 11 6 4.1167 -1.9118 -4.6367 12 8 4.9232 -1.0427 -4.9061 13 6 4.1986 -3.2260 -5.3021 14 6 5.2002 -3.4746 -6.2502 15 8 6.0999 -2.5080 -6.5605 16 6 5.2705 -4.7155 -6.8661 17 6 4.3511 -5.6966 -6.5532 18 6 4.4296 -7.0404 -7.2308 19 8 5.6423 -7.6947 -6.8521 20 14 2.9743 -8.0824 -6.7142 21 6 3.3562 -5.4528 -5.6203 22 6 3.2748 -4.2280 -4.9947 23 6 3.5031 -0.3964 -1.5939 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 1.5846 1.9889 0.8259 28 1 3.1237 1.4448 0.1166 29 1 1.7750 1.9215 -0.9425 30 1 1.6765 -1.7489 1.2494 31 1 3.1299 -0.7216 1.2491 32 1 1.6765 -0.2073 2.1393 33 1 0.8607 -0.5260 -3.1111 34 1 1.4833 1.0488 -2.4544 35 1 2.5054 -2.3684 -3.5144 36 1 6.8947 -2.5191 -6.0099 37 1 6.0430 -4.9130 -7.5947 38 1 4.4130 -6.9036 -8.3121 39 1 5.7254 -7.8493 -5.9011 40 1 1.7064 -7.3981 -7.0739 41 1 3.0404 -9.4106 -7.3751 42 1 2.6417 -6.2268 -5.3818 43 1 2.4973 -4.0423 -4.2684 44 1 3.8353 0.5719 -1.2194 45 1 4.1969 -1.2033 -1.3578 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:40:30 Heat of formation + Delta-G solvation = -62.238558 kcal Electronic energy + Delta-G solvation = -25439.465523 eV Core-core repulsion = 21810.354415 eV Total energy + Delta-G solvation = -3629.111108 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88922 -41.01678 -39.57829 -38.43462 -37.14927 -36.46205 -34.04956 -32.33107 -31.12100 -28.42939 -28.18843 -27.68190 -26.22061 -25.80900 -23.91002 -23.56913 -21.81829 -21.17994 -19.44949 -19.05963 -18.71357 -18.16983 -17.26898 -16.77948 -16.63616 -16.33802 -16.16266 -15.89484 -15.75648 -15.54097 -15.21339 -15.04044 -14.80566 -14.49214 -14.17697 -13.85318 -13.77115 -13.49928 -13.29353 -13.10109 -12.94408 -12.73479 -12.67435 -12.37209 -12.31267 -12.20373 -11.98948 -11.82610 -11.70317 -11.28639 -11.07686 -10.95967 -10.83894 -10.49065 -10.21155 -9.99646 -9.78592 -4.98927 -0.43203 0.13244 1.28277 1.64410 1.70985 1.99950 2.01646 2.55831 3.10326 3.43227 3.52010 3.57003 3.58958 3.67913 3.78123 3.79570 3.90060 4.07330 4.11030 4.25403 4.30186 4.32455 4.36499 4.57973 4.59409 4.74454 4.75161 4.76868 4.81655 4.85729 4.86727 4.99724 5.01142 5.02732 5.06731 5.12649 5.16759 5.18925 5.23054 5.25399 5.28007 5.44576 5.49100 5.54402 5.58604 5.71299 6.46859 6.69138 6.74977 7.15944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.087 4.087 6 H 0.100 0.900 7 C -0.134 4.134 8 C 0.112 3.888 9 H 0.075 0.925 10 N -0.694 5.694 11 C 0.556 3.444 12 O -0.565 6.565 13 C -0.180 4.180 14 C 0.152 3.848 15 O -0.499 6.499 16 C -0.141 4.141 17 C -0.073 4.073 18 C -0.085 4.085 19 O -0.554 6.554 20 Si 0.791 3.209 21 C -0.129 4.129 22 C -0.053 4.053 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.414 0.586 36 H 0.407 0.593 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.397 0.603 40 H -0.278 1.278 41 H -0.303 1.303 42 H 0.167 0.833 43 H 0.169 0.831 44 H 0.095 0.905 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 -4.079 6.435 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.207 4.207 4 C -0.198 4.198 5 C -0.106 4.106 6 H 0.118 0.882 7 C -0.172 4.172 8 C 0.006 3.994 9 H 0.094 0.906 10 N -0.346 5.346 11 C 0.345 3.655 12 O -0.445 6.445 13 C -0.183 4.183 14 C 0.105 3.895 15 O -0.312 6.312 16 C -0.160 4.160 17 C -0.074 4.074 18 C -0.194 4.194 19 O -0.362 6.362 20 Si 0.696 3.304 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.186 4.186 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.267 0.733 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.248 0.752 40 H -0.205 1.205 41 H -0.231 1.231 42 H 0.183 0.817 43 H 0.186 0.814 44 H 0.113 0.887 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.064 -3.678 4.949 7.979 hybrid contribution 0.805 0.325 -0.340 0.933 sum -4.259 -3.353 4.608 7.114 Atomic orbital electron populations 1.21838 0.94185 1.02022 1.01720 1.20408 0.95639 0.95107 0.94579 1.22054 1.01012 0.95714 1.01926 1.21848 1.00820 1.00335 0.96834 1.22592 0.94659 0.99983 0.93317 0.88180 1.23412 0.94999 1.02551 0.96247 1.21861 0.99009 0.85203 0.93318 0.90631 1.45442 1.31906 1.15991 1.41269 1.18347 0.81012 0.87177 0.78982 1.90806 1.41981 1.47267 1.64433 1.20444 1.01400 0.95336 1.01151 1.18768 0.90839 0.87416 0.92438 1.84713 1.33060 1.52171 1.61283 1.21345 1.01346 0.91351 1.01920 1.20580 0.94507 0.96102 0.96193 1.25431 0.98785 0.93324 1.01869 1.86506 1.39102 1.79267 1.31357 0.93696 0.72615 0.74806 0.89294 1.21235 0.98611 0.98079 0.96648 1.21499 0.96456 0.91175 0.97964 1.23564 0.97373 1.02906 0.94768 0.92248 0.92399 0.93097 0.92925 0.92519 0.92085 0.92261 0.93007 0.93008 0.89920 0.88179 0.74753 0.73311 0.84932 0.87609 0.75225 1.20474 1.23131 0.81656 0.81374 0.88668 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.64 8.31 71.98 0.60 1.24 16 2 C -0.06 0.25 0.68 -52.18 -0.04 0.22 16 3 C -0.15 0.47 7.48 71.98 0.54 1.01 16 4 C -0.14 0.51 8.43 71.98 0.61 1.12 16 5 C -0.09 0.48 2.92 -10.27 -0.03 0.45 16 6 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 7 C -0.13 0.63 6.40 31.12 0.20 0.83 16 8 C 0.11 -0.01 4.32 45.52 0.20 0.19 16 9 H 0.08 0.44 7.46 -2.39 -0.02 0.42 16 10 N -0.69 0.78 5.22 -443.19 -2.31 -1.53 16 11 C 0.56 3.41 7.76 86.70 0.67 4.08 16 12 O -0.57 -8.58 14.76 16.93 0.25 -8.33 16 13 C -0.18 -0.45 5.89 -20.01 -0.12 -0.57 16 14 C 0.15 0.83 6.72 22.84 0.15 0.98 16 15 O -0.50 -4.35 11.58 -68.71 -0.80 -5.15 16 16 C -0.14 -0.34 9.60 22.34 0.21 -0.13 16 17 C -0.07 0.16 5.35 -19.83 -0.11 0.05 16 18 C -0.09 0.24 2.79 71.24 0.20 0.44 16 19 O -0.55 1.01 12.83 -148.98 -1.91 -0.90 16 20 Si 0.79 -4.62 29.78 68.60 2.04 -2.58 16 21 C -0.13 0.81 8.64 22.24 0.19 1.00 16 22 C -0.05 0.28 9.53 22.52 0.21 0.50 16 23 C -0.15 0.29 7.09 31.12 0.22 0.51 16 24 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.06 -0.27 7.56 -2.39 -0.02 -0.29 16 26 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.06 -0.14 6.46 -2.39 -0.02 -0.16 16 29 H 0.06 -0.21 6.05 -2.39 -0.01 -0.23 16 30 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.05 -0.14 8.10 -2.39 -0.02 -0.16 16 32 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.10 -0.45 6.09 -2.39 -0.01 -0.46 16 35 H 0.41 -3.32 6.73 -92.71 -0.62 -3.94 16 36 H 0.41 0.69 9.06 -74.06 -0.67 0.02 16 37 H 0.13 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.11 -0.08 7.96 -2.38 -0.02 -0.10 16 39 H 0.40 -4.20 8.70 -74.06 -0.64 -4.85 16 40 H -0.28 0.52 7.11 99.48 0.71 1.22 16 41 H -0.30 -0.82 7.11 99.48 0.71 -0.12 16 42 H 0.17 -2.07 4.88 -2.91 -0.01 -2.08 16 43 H 0.17 -2.19 6.40 -2.91 -0.02 -2.21 16 44 H 0.10 -0.13 5.69 -2.39 -0.01 -0.14 16 45 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 Total: 0.00 -21.86 354.66 0.12 -21.74 By element: Atomic # 1 Polarization: -14.30 SS G_CDS: -0.87 Total: -15.17 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 3.72 Total: 11.92 kcal Atomic # 7 Polarization: 0.78 SS G_CDS: -2.31 Total: -1.53 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -2.46 Total: -14.38 kcal Atomic # 14 Polarization: -4.62 SS G_CDS: 2.04 Total: -2.58 kcal Total: -21.86 0.12 -21.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.503 kcal (2) G-P(sol) polarization free energy of solvation -21.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds