Wall clock time and date at job start Sun Mar 7 2021 13:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37785 * 119.84468 * 2 1 4 4 C 1.39710 * 119.90896 * 179.97438 * 3 2 1 5 5 C 1.47534 * 120.19581 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99839 * 179.97438 * 5 4 3 7 7 N 1.34779 * 119.99783 * 359.72828 * 5 4 3 8 8 C 1.46497 * 119.99854 * 180.27408 * 7 5 4 9 9 H 1.08999 * 112.85027 * 25.32946 * 8 7 5 10 10 C 1.53784 * 113.61528 * 156.52424 * 8 7 5 11 11 C 1.53787 * 87.07792 * 89.11714 * 10 8 7 12 12 H 1.09002 * 113.61338 * 270.80095 * 11 10 8 13 13 C 1.53001 * 113.61603 * 139.98616 * 11 10 8 14 14 C 1.52999 * 109.47131 * 63.64814 * 13 11 10 15 15 C 1.52990 * 109.47088 * 183.65258 * 13 11 10 16 16 C 1.53002 * 109.46577 * 303.65155 * 13 11 10 17 17 C 1.53777 * 113.61379 * 254.13240 * 8 7 5 18 18 C 1.40136 * 119.61221 * 0.27382 * 4 3 2 19 19 O 1.35660 * 120.14991 * 179.72362 * 18 4 3 20 20 C 1.38714 * 119.70116 * 359.44676 * 18 4 3 21 21 C 1.50701 * 119.95927 * 180.27291 * 20 18 4 22 22 O 1.42902 * 109.47141 * 285.28361 * 21 20 18 23 23 Si 1.86296 * 109.47247 * 165.28082 * 21 20 18 24 24 C 1.38054 * 120.08361 * 0.55909 * 20 18 4 25 25 H 1.09005 * 109.46521 * 90.00921 * 1 2 3 26 26 H 1.09001 * 109.46863 * 209.99849 * 1 2 3 27 27 H 1.08994 * 109.47328 * 330.00587 * 1 2 3 28 28 H 1.08004 * 120.04798 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99684 * 0.27037 * 7 5 4 30 30 H 1.08989 * 113.61741 * 203.66492 * 10 8 7 31 31 H 1.08999 * 113.61162 * 334.48853 * 10 8 7 32 32 H 1.08998 * 109.46982 * 60.00341 * 14 13 11 33 33 H 1.08999 * 109.46899 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47257 * 300.00345 * 14 13 11 35 35 H 1.09001 * 109.47366 * 59.99874 * 15 13 11 36 36 H 1.09003 * 109.47318 * 179.97438 * 15 13 11 37 37 H 1.08998 * 109.47650 * 299.99755 * 15 13 11 38 38 H 1.09000 * 109.47044 * 53.49732 * 16 13 11 39 39 H 1.08998 * 109.47026 * 173.49934 * 16 13 11 40 40 H 1.09001 * 109.46968 * 293.49731 * 16 13 11 41 41 H 1.09002 * 113.61712 * 25.43735 * 17 8 7 42 42 H 1.09000 * 113.61496 * 156.33258 * 17 8 7 43 43 H 0.96698 * 114.00151 * 89.99493 * 19 18 4 44 44 H 1.09001 * 109.47059 * 45.28152 * 21 20 18 45 45 H 0.96695 * 113.99543 * 299.99782 * 22 21 20 46 46 H 1.48499 * 110.00102 * 58.67987 * 23 21 20 47 47 H 1.48498 * 110.00289 * 180.02562 * 23 21 20 48 48 H 1.07991 * 119.80655 * 179.74466 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1951 0.0000 4 6 3.5898 1.1967 0.0005 5 6 4.3304 2.4727 0.0000 6 8 5.5463 2.4698 0.0009 7 7 3.6592 3.6414 -0.0066 8 6 4.3946 4.9084 -0.0132 9 1 5.3924 4.8164 -0.4421 10 6 3.5862 6.0869 -0.5812 11 6 3.0795 6.3272 0.8507 12 1 2.1719 5.7734 1.0914 13 6 2.9904 7.8070 1.2292 14 6 1.9588 8.5004 0.3371 15 6 2.5661 7.9342 2.6936 16 6 4.3575 8.4660 1.0352 17 6 4.3702 5.6419 1.3381 18 6 4.2836 -0.0209 -0.0047 19 8 5.6402 -0.0320 -0.0099 20 6 3.5771 -1.2146 0.0012 21 6 4.3174 -2.5272 0.0018 22 8 4.8556 -2.7711 -1.2993 23 14 3.1445 -3.9014 0.4563 24 6 2.1966 -1.2016 0.0006 25 1 -0.3632 -0.0002 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6510 2.1294 -0.0004 29 1 2.6892 3.6435 -0.0070 30 1 4.2062 6.8963 -0.9665 31 1 2.8041 5.7845 -1.2776 32 1 0.9849 8.0308 0.4753 33 1 1.8957 9.5547 0.6065 34 1 2.2611 8.4097 -0.7062 35 1 3.3011 7.4402 3.3291 36 1 2.5031 8.9884 2.9634 37 1 1.5922 7.4646 2.8318 38 1 4.7122 8.2757 0.0222 39 1 4.2684 9.5408 1.1930 40 1 5.0659 8.0510 1.7522 41 1 4.2197 4.9805 2.1913 42 1 5.2042 6.3298 1.4767 43 1 6.0369 -0.0371 0.8719 44 1 5.1285 -2.4866 0.7287 45 1 4.1888 -2.8199 -1.9979 46 1 2.0170 -3.9469 -0.5091 47 1 3.8625 -5.2013 0.4610 48 1 1.6511 -2.1336 0.0010 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_13422088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:40:33 Heat of formation + Delta-G solvation = -65.187369 kcal Electronic energy + Delta-G solvation = -27714.768023 eV Core-core repulsion = 23929.991426 eV Total energy + Delta-G solvation = -3784.776597 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.182 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.95108 -41.12004 -39.63499 -38.06840 -37.79064 -36.48655 -34.11730 -33.05793 -32.32555 -28.44819 -28.19727 -27.54969 -26.83666 -26.39826 -26.23232 -24.70794 -22.09498 -21.65564 -21.16676 -19.67840 -19.08148 -18.46191 -18.00339 -17.42786 -16.84543 -16.73338 -16.41224 -16.07446 -15.90964 -15.79998 -15.60532 -15.12512 -14.97403 -14.86373 -14.43207 -14.34384 -14.14525 -13.79228 -13.59365 -13.50365 -13.38746 -13.16642 -12.90337 -12.76615 -12.68857 -12.52830 -12.39086 -12.26008 -12.02458 -11.85121 -11.83533 -11.72283 -11.31176 -11.10450 -11.03053 -10.87170 -10.54309 -10.26095 -9.99855 -9.51577 -4.95300 -0.36531 0.06496 1.24582 1.54798 1.68780 1.92477 2.02114 2.54143 3.15672 3.33213 3.49959 3.51908 3.56852 3.59206 3.76190 3.77548 3.87045 4.08631 4.10912 4.16616 4.27740 4.30210 4.36942 4.49704 4.56407 4.62245 4.73165 4.74739 4.78907 4.81421 4.83548 4.84685 4.88795 4.96974 4.97478 5.00241 5.04628 5.14362 5.15951 5.17348 5.23348 5.24322 5.25831 5.41539 5.42608 5.47238 5.52582 5.66891 5.69183 6.44144 6.45780 6.72379 7.13967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.061 4.061 4 C -0.181 4.181 5 C 0.556 3.444 6 O -0.565 6.565 7 N -0.695 5.695 8 C 0.112 3.888 9 H 0.075 0.925 10 C -0.133 4.133 11 C -0.087 4.087 12 H 0.098 0.902 13 C -0.057 4.057 14 C -0.140 4.140 15 C -0.141 4.141 16 C -0.150 4.150 17 C -0.148 4.148 18 C 0.164 3.836 19 O -0.492 6.492 20 C -0.153 4.153 21 C -0.086 4.086 22 O -0.547 6.547 23 Si 0.786 3.214 24 C -0.079 4.079 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.412 0.588 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.402 0.598 44 H 0.114 0.886 45 H 0.383 0.617 46 H -0.266 1.266 47 H -0.305 1.305 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 1.827 3.374 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.079 4.079 4 C -0.184 4.184 5 C 0.345 3.655 6 O -0.444 6.444 7 N -0.347 5.347 8 C 0.006 3.994 9 H 0.093 0.907 10 C -0.171 4.171 11 C -0.105 4.105 12 H 0.116 0.884 13 C -0.057 4.057 14 C -0.197 4.197 15 C -0.198 4.198 16 C -0.207 4.207 17 C -0.186 4.186 18 C 0.118 3.882 19 O -0.304 6.304 20 C -0.154 4.154 21 C -0.193 4.193 22 O -0.355 6.355 23 Si 0.689 3.311 24 C -0.097 4.097 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.251 0.749 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.261 0.739 44 H 0.132 0.868 45 H 0.232 0.768 46 H -0.193 1.193 47 H -0.233 1.233 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.496 1.138 2.854 9.034 hybrid contribution 0.521 0.270 -0.757 0.958 sum -7.975 1.408 2.096 8.365 Atomic orbital electron populations 1.20928 0.87983 1.04861 1.03637 1.20111 0.98114 0.91694 0.99418 1.21412 0.90924 0.99873 0.95694 1.20407 0.95086 0.92448 1.10478 1.18358 0.86925 0.84390 0.75848 1.90805 1.15065 1.87901 1.50657 1.45460 1.10567 1.04225 1.74464 1.21867 0.96300 0.82791 0.98434 0.90716 1.23401 0.99895 0.96535 0.97252 1.22631 0.97451 0.95184 0.95248 0.88401 1.20406 0.95634 0.94110 0.95568 1.21838 0.98467 0.99998 0.99438 1.21843 1.01228 1.01553 0.95201 1.22053 0.96391 1.00266 1.01971 1.23607 0.99471 0.99028 0.96503 1.18561 0.83527 0.90828 0.95320 1.84766 1.15395 1.96064 1.34194 1.20653 0.94617 0.95003 1.05121 1.25329 1.05985 1.00118 0.87857 1.86641 1.38000 1.93495 1.17353 0.94053 0.75501 0.73064 0.88467 1.21415 0.92205 0.99752 0.96320 0.90178 0.89790 0.89616 0.82464 0.74931 0.88047 0.89942 0.92310 0.92998 0.92365 0.93051 0.92899 0.92341 0.92069 0.92826 0.92545 0.92077 0.88588 0.73902 0.86843 0.76808 1.19253 1.23342 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.17 10.00 71.24 0.71 1.88 16 2 C -0.09 0.43 5.87 -19.90 -0.12 0.32 16 3 C -0.06 0.19 9.18 22.52 0.21 0.40 16 4 C -0.18 -0.75 5.89 -20.01 -0.12 -0.87 16 5 C 0.56 4.34 7.76 86.69 0.67 5.01 16 6 O -0.56 -9.44 14.78 16.94 0.25 -9.19 16 7 N -0.69 -0.38 5.21 -443.21 -2.31 -2.69 16 8 C 0.11 0.13 4.29 45.52 0.20 0.33 16 9 H 0.07 0.52 7.50 -2.39 -0.02 0.51 16 10 C -0.13 0.50 6.40 31.12 0.20 0.70 16 11 C -0.09 0.38 2.93 -10.17 -0.03 0.35 16 12 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 13 C -0.06 0.21 0.68 -52.18 -0.04 0.18 16 14 C -0.14 0.57 8.31 71.98 0.60 1.17 16 15 C -0.14 0.41 8.43 71.98 0.61 1.02 16 16 C -0.15 0.39 7.48 71.98 0.54 0.93 16 17 C -0.15 0.11 7.11 31.21 0.22 0.33 16 18 C 0.16 1.06 6.69 22.84 0.15 1.22 16 19 O -0.49 -5.18 10.91 -68.84 -0.75 -5.93 16 20 C -0.15 -0.24 5.27 -19.79 -0.10 -0.35 16 21 C -0.09 -0.13 2.37 71.24 0.17 0.04 16 22 O -0.55 -3.64 12.88 -148.98 -1.92 -5.56 16 23 Si 0.79 -2.34 30.24 68.60 2.07 -0.27 16 24 C -0.08 0.24 8.30 22.30 0.19 0.43 16 25 H 0.08 -0.82 8.14 -2.38 -0.02 -0.84 16 26 H 0.08 -0.96 8.08 -2.39 -0.02 -0.98 16 27 H 0.08 -1.04 8.08 -2.39 -0.02 -1.06 16 28 H 0.16 -1.51 6.40 -2.91 -0.02 -1.53 16 29 H 0.41 -2.45 6.73 -92.71 -0.62 -3.07 16 30 H 0.10 -0.38 6.09 -2.39 -0.01 -0.40 16 31 H 0.08 -0.45 8.14 -2.39 -0.02 -0.46 16 32 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.06 -0.24 7.56 -2.39 -0.02 -0.26 16 35 H 0.05 -0.10 8.11 -2.39 -0.02 -0.12 16 36 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.06 -0.18 6.05 -2.39 -0.01 -0.20 16 39 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 -0.11 6.46 -2.39 -0.02 -0.12 16 41 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.10 -0.04 5.70 -2.39 -0.01 -0.05 16 43 H 0.40 1.49 9.06 -74.06 -0.67 0.81 16 44 H 0.11 0.12 7.84 -2.39 -0.02 0.11 16 45 H 0.38 0.10 8.70 -74.06 -0.64 -0.54 16 46 H -0.27 0.45 6.68 99.48 0.66 1.12 16 47 H -0.31 -1.66 7.11 99.48 0.71 -0.96 16 48 H 0.15 -1.09 4.83 -2.92 -0.01 -1.10 16 Total: 0.00 -21.70 375.27 0.45 -21.25 By element: Atomic # 1 Polarization: -9.74 SS G_CDS: -0.95 Total: -10.69 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 4.06 Total: 13.07 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.31 Total: -2.69 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -2.42 Total: -20.69 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.07 Total: -0.27 kcal Total: -21.70 0.45 -21.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_13422088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.937 kcal (2) G-P(sol) polarization free energy of solvation -21.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds