Wall clock time and date at job start Sun Mar 7 2021 07:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46874 * 2 1 4 4 C 1.52997 * 109.46995 * 240.00391 * 2 1 3 5 5 C 1.52991 * 109.47156 * 120.00343 * 2 1 3 6 6 H 1.09007 * 112.84726 * 292.45526 * 5 2 1 7 7 C 1.53781 * 113.61879 * 63.65093 * 5 2 1 8 8 C 1.53779 * 87.08066 * 139.98244 * 7 5 2 9 9 H 1.09006 * 113.61608 * 219.93754 * 8 7 5 10 10 N 1.46500 * 113.61506 * 89.12162 * 8 7 5 11 11 C 1.34777 * 119.99949 * 156.52989 * 10 8 7 12 12 O 1.21278 * 120.00232 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99658 * 180.02562 * 11 10 8 14 14 C 1.50705 * 109.47130 * 179.97438 * 13 11 10 15 15 C 1.34858 * 125.88749 * 84.97079 * 14 13 11 16 16 C 1.40886 * 107.41073 * 180.02562 * 15 14 13 17 17 C 1.34843 * 107.42122 * 0.02562 * 16 15 14 18 18 C 1.50707 * 125.88787 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46990 * 245.02070 * 18 17 16 20 20 Si 1.86294 * 109.47388 * 5.02145 * 18 17 16 21 21 N 1.36339 * 108.22185 * 0.26078 * 17 16 15 22 22 C 1.53779 * 87.17507 * 334.52842 * 8 7 5 23 23 H 1.09001 * 109.47306 * 300.00110 * 1 2 3 24 24 H 1.09002 * 109.47115 * 59.99858 * 1 2 3 25 25 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46826 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47365 * 299.99988 * 3 2 1 28 28 H 1.08998 * 109.47182 * 60.00388 * 3 2 1 29 29 H 1.09001 * 109.47515 * 293.49275 * 4 2 1 30 30 H 1.09001 * 109.47657 * 53.49773 * 4 2 1 31 31 H 1.09007 * 109.47110 * 173.49817 * 4 2 1 32 32 H 1.08997 * 113.61127 * 25.43788 * 7 5 2 33 33 H 1.08991 * 113.61837 * 254.53120 * 7 5 2 34 34 H 0.96997 * 120.00055 * 336.52514 * 10 8 7 35 35 H 1.08996 * 109.47255 * 59.99817 * 13 11 10 36 36 H 1.09004 * 109.46913 * 299.99262 * 13 11 10 37 37 H 1.07998 * 126.28893 * 0.02562 * 15 14 13 38 38 H 1.08004 * 126.28466 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.47022 * 125.02876 * 18 17 16 40 40 H 0.96693 * 114.00477 * 179.97438 * 19 18 17 41 41 H 1.48503 * 110.00178 * 300.00068 * 20 18 17 42 42 H 1.48502 * 109.99771 * 61.32244 * 20 18 17 43 43 H 0.96998 * 125.64200 * 179.73446 * 21 17 16 44 44 H 1.09002 * 113.61517 * 140.02271 * 22 8 7 45 45 H 1.09000 * 113.61574 * 270.92514 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 1.8193 -0.1808 2.1697 7 6 1.6558 -2.2094 1.3013 8 6 3.0661 -2.4732 1.8547 9 1 3.5306 -3.3745 1.4546 10 7 3.1483 -2.3911 3.3151 11 6 4.1345 -3.0336 3.9716 12 8 4.9536 -3.6801 3.3536 13 6 4.2188 -2.9495 5.4740 14 6 5.4011 -3.7498 5.9564 15 6 6.6740 -3.3111 6.0342 16 6 7.4557 -4.3718 6.5330 17 6 6.6310 -5.4183 6.7404 18 6 7.0350 -6.7698 7.2709 19 8 6.8268 -7.7595 6.2612 20 14 8.8359 -6.7373 7.7465 21 7 5.3697 -5.0446 6.3824 22 6 3.5051 -1.1845 1.1395 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7749 -1.7769 -1.1931 30 1 1.5848 -0.2789 -2.1355 31 1 3.1238 -0.6215 -1.3094 32 1 1.4825 -2.6502 0.3197 33 1 0.8595 -2.4301 2.0121 34 1 2.4931 -1.8743 3.8094 35 1 3.3053 -3.3515 5.9121 36 1 4.3379 -1.9082 5.7735 37 1 7.0287 -2.3275 5.7639 38 1 8.5200 -4.3505 6.7156 39 1 6.4322 -7.0115 8.1463 40 1 7.0665 -8.6558 6.5336 41 1 9.6685 -6.4089 6.5614 42 1 9.0601 -5.7344 8.8185 43 1 4.5799 -5.6060 6.4264 44 1 4.2008 -0.5784 1.7198 45 1 3.8364 -1.3457 0.1137 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:37:43 Heat of formation + Delta-G solvation = -9.469682 kcal Electronic energy + Delta-G solvation = -23602.202462 eV Core-core repulsion = 20201.324387 eV Total energy + Delta-G solvation = -3400.878075 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.47581 -41.51618 -39.93289 -37.68854 -36.52929 -34.00313 -32.89366 -32.11608 -29.54981 -28.46777 -28.21981 -26.26854 -26.10807 -24.96084 -22.33863 -21.52316 -21.22451 -21.09046 -19.09276 -18.48957 -18.33434 -18.09174 -16.90448 -16.57419 -16.20741 -15.93032 -15.64195 -15.25879 -15.20059 -15.02898 -14.93697 -14.59013 -14.26324 -14.12728 -13.81093 -13.63560 -13.52355 -13.45998 -13.13764 -12.92932 -12.75410 -12.69995 -12.54606 -12.41625 -12.05292 -12.03347 -11.86710 -11.34659 -11.11430 -11.03741 -10.88172 -10.44103 -10.07113 -9.98685 -9.10784 -4.98632 0.92627 1.25400 1.54509 1.64691 1.72199 2.05247 2.19163 2.37762 3.45846 3.51411 3.55801 3.57558 3.75138 3.83865 3.90561 3.96439 4.06921 4.13010 4.22118 4.26110 4.28119 4.29692 4.51429 4.55767 4.63483 4.72141 4.73400 4.77069 4.81874 4.84490 4.95385 4.98716 5.02651 5.03782 5.10373 5.12412 5.16119 5.20911 5.24463 5.40490 5.46837 5.50171 5.68600 5.81194 5.93892 6.47081 6.57338 6.85097 7.21967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.087 4.087 6 H 0.099 0.901 7 C -0.131 4.131 8 C 0.112 3.888 9 H 0.071 0.929 10 N -0.698 5.698 11 C 0.511 3.489 12 O -0.580 6.580 13 C -0.064 4.064 14 C 0.039 3.961 15 C -0.202 4.202 16 C -0.228 4.228 17 C 0.020 3.980 18 C -0.061 4.061 19 O -0.570 6.570 20 Si 0.816 3.184 21 N -0.530 5.530 22 C -0.151 4.151 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.418 0.582 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.406 0.594 41 H -0.308 1.308 42 H -0.288 1.288 43 H 0.423 0.577 44 H 0.059 0.941 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -0.347 4.023 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.206 4.206 5 C -0.105 4.105 6 H 0.117 0.883 7 C -0.169 4.169 8 C 0.006 3.994 9 H 0.089 0.911 10 N -0.350 5.350 11 C 0.298 3.702 12 O -0.459 6.459 13 C -0.104 4.104 14 C -0.075 4.075 15 C -0.226 4.226 16 C -0.253 4.253 17 C -0.094 4.094 18 C -0.170 4.170 19 O -0.381 6.381 20 Si 0.722 3.278 21 N -0.126 5.126 22 C -0.190 4.190 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.256 0.744 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.257 0.743 41 H -0.236 1.236 42 H -0.215 1.215 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.987 0.068 3.318 5.991 hybrid contribution -0.633 0.475 -0.274 0.837 sum -5.620 0.543 3.045 6.415 Atomic orbital electron populations 1.21833 0.94040 1.02017 1.01786 1.20414 0.95745 0.95122 0.94531 1.21848 1.00726 0.95476 1.01798 1.22049 1.00901 1.00634 0.97059 1.22626 0.94487 0.94933 0.98447 0.88316 1.23371 0.94992 0.96230 1.02290 1.21809 0.98796 0.98436 0.80322 0.91123 1.45534 1.30604 1.52192 1.06688 1.21052 0.80315 0.78026 0.90797 1.90771 1.41721 1.42982 1.70416 1.20268 0.96736 1.03256 0.90167 1.19933 0.96610 0.85420 1.05552 1.20794 0.92704 1.00530 1.08610 1.20723 0.98603 0.95540 1.10394 1.20146 0.85029 0.96138 1.08132 1.24622 1.14495 0.84610 0.93248 1.86473 1.90033 1.21001 1.40561 0.94475 0.71038 0.85957 0.76377 1.41847 1.09204 1.11160 1.50381 1.23616 0.97383 0.96736 1.01237 0.92324 0.93031 0.92264 0.93184 0.92904 0.92354 0.92031 0.92817 0.92728 0.88330 0.89669 0.74427 0.84643 0.83648 0.84154 0.85649 0.88382 0.74256 1.23638 1.21525 0.73799 0.92249 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.50 8.31 71.98 0.60 1.10 16 2 C -0.06 0.18 0.68 -52.19 -0.04 0.14 16 3 C -0.14 0.28 8.43 71.98 0.61 0.89 16 4 C -0.15 0.28 7.48 71.98 0.54 0.82 16 5 C -0.09 0.35 2.93 -10.18 -0.03 0.32 16 6 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 7 C -0.13 0.54 6.40 31.12 0.20 0.73 16 8 C 0.11 0.08 4.29 45.52 0.20 0.28 16 9 H 0.07 0.50 7.50 -2.38 -0.02 0.48 16 10 N -0.70 1.37 5.26 -440.04 -2.32 -0.95 16 11 C 0.51 2.17 7.82 87.66 0.69 2.85 16 12 O -0.58 -9.48 15.65 -3.02 -0.05 -9.52 16 13 C -0.06 0.15 6.24 29.10 0.18 0.33 16 14 C 0.04 0.25 5.66 41.08 0.23 0.49 16 15 C -0.20 -2.22 10.77 22.14 0.24 -1.98 16 16 C -0.23 -2.90 9.37 22.14 0.21 -2.70 16 17 C 0.02 0.18 6.53 41.08 0.27 0.45 16 18 C -0.06 -0.13 3.07 71.24 0.22 0.09 16 19 O -0.57 -1.54 12.86 -148.98 -1.92 -3.46 16 20 Si 0.82 0.47 30.60 68.60 2.10 2.57 16 21 N -0.53 -3.37 6.07 -171.11 -1.04 -4.41 16 22 C -0.15 0.01 7.11 31.21 0.22 0.23 16 23 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.06 -0.24 7.56 -2.39 -0.02 -0.25 16 26 H 0.05 -0.04 8.11 -2.38 -0.02 -0.06 16 27 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.06 -0.15 6.05 -2.39 -0.01 -0.16 16 30 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.05 -0.04 6.46 -2.38 -0.02 -0.06 16 32 H 0.10 -0.37 6.09 -2.39 -0.01 -0.38 16 33 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.42 -3.79 8.70 -92.71 -0.81 -4.60 16 35 H 0.14 -1.25 8.14 -2.39 -0.02 -1.27 16 36 H 0.15 -1.14 8.14 -2.38 -0.02 -1.16 16 37 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.13 1.57 6.24 -2.91 -0.02 1.55 16 39 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 40 H 0.41 -3.61 8.74 -74.06 -0.65 -4.25 16 41 H -0.31 -3.11 7.11 99.48 0.71 -2.41 16 42 H -0.29 -1.69 7.11 99.48 0.71 -0.98 16 43 H 0.42 0.48 8.96 -92.71 -0.83 -0.35 16 44 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 45 H 0.09 0.08 5.70 -2.39 -0.01 0.07 16 Total: 0.00 -26.45 357.32 -0.13 -26.58 By element: Atomic # 1 Polarization: -13.62 SS G_CDS: -1.24 Total: -14.86 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.33 Total: 4.05 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: -3.36 Total: -5.36 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.96 Total: -12.98 kcal Atomic # 14 Polarization: 0.47 SS G_CDS: 2.10 Total: 2.57 kcal Total: -26.45 -0.13 -26.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.109 kcal (2) G-P(sol) polarization free energy of solvation -26.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds