Wall clock time and date at job start Sun Mar 7 2021 07:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46810 * 2 1 4 4 C 1.52993 * 109.47690 * 239.99750 * 2 1 3 5 5 C 1.53001 * 109.47069 * 119.99125 * 2 1 3 6 6 H 1.09005 * 112.84988 * 186.27400 * 5 2 1 7 7 C 1.53773 * 113.69378 * 317.54843 * 5 2 1 8 8 C 1.53782 * 87.08192 * 139.98962 * 7 5 2 9 9 H 1.09000 * 113.61899 * 220.02059 * 8 7 5 10 10 N 1.46497 * 113.61587 * 89.11757 * 8 7 5 11 11 C 1.34780 * 120.00284 * 107.50256 * 10 8 7 12 12 O 1.21277 * 119.99819 * 0.02562 * 11 10 8 13 13 C 1.50702 * 119.99911 * 180.02562 * 11 10 8 14 14 C 1.53005 * 109.46989 * 180.02562 * 13 11 10 15 15 O 1.42890 * 109.47131 * 179.97438 * 14 13 11 16 16 C 1.35902 * 116.99917 * 179.97438 * 15 14 13 17 17 C 1.38729 * 120.05589 * 359.73083 * 16 15 14 18 18 C 1.38147 * 119.94161 * 179.74100 * 17 16 15 19 19 C 1.38259 * 120.05625 * 0.51062 * 18 17 16 20 20 C 1.50706 * 119.94317 * 179.74450 * 19 18 17 21 21 O 1.42899 * 109.47078 * 245.01962 * 20 19 18 22 22 Si 1.86300 * 109.47058 * 5.02003 * 20 19 18 23 23 C 1.38265 * 120.11645 * 359.76411 * 19 18 17 24 24 C 1.38146 * 120.05066 * 359.97438 * 23 19 18 25 25 C 1.53783 * 87.08066 * 334.56687 * 8 7 5 26 26 H 1.09000 * 109.47166 * 306.29100 * 1 2 3 27 27 H 1.08998 * 109.47269 * 66.29502 * 1 2 3 28 28 H 1.08997 * 109.46709 * 186.29293 * 1 2 3 29 29 H 1.09004 * 109.47231 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46774 * 299.99463 * 3 2 1 31 31 H 1.08996 * 109.47597 * 59.99566 * 3 2 1 32 32 H 1.09002 * 109.46907 * 299.99683 * 4 2 1 33 33 H 1.08998 * 109.47247 * 59.99708 * 4 2 1 34 34 H 1.08995 * 109.47638 * 179.97438 * 4 2 1 35 35 H 1.08995 * 113.61706 * 25.44456 * 7 5 2 36 36 H 1.08999 * 113.62030 * 254.53666 * 7 5 2 37 37 H 0.97005 * 120.00142 * 287.50463 * 10 8 7 38 38 H 1.09000 * 109.46972 * 299.99306 * 13 11 10 39 39 H 1.08997 * 109.47524 * 59.99729 * 13 11 10 40 40 H 1.09003 * 109.46601 * 299.99911 * 14 13 11 41 41 H 1.08998 * 109.46831 * 59.99525 * 14 13 11 42 42 H 1.07997 * 120.02857 * 359.97438 * 17 16 15 43 43 H 1.08003 * 119.96938 * 180.26895 * 18 17 16 44 44 H 1.09004 * 109.47145 * 125.02050 * 20 19 18 45 45 H 0.96703 * 113.99687 * 59.99851 * 21 20 19 46 46 H 1.48500 * 110.00153 * 58.68017 * 22 20 19 47 47 H 1.48504 * 109.99956 * 180.02562 * 22 20 19 48 48 H 1.07991 * 119.97547 * 179.97438 * 23 19 18 49 49 H 1.08000 * 120.02753 * 179.97438 * 24 23 19 50 50 H 1.09001 * 113.61186 * 139.97431 * 25 8 7 51 51 H 1.08997 * 113.61625 * 270.88176 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0400 -0.7211 1.2494 6 1 3.1225 -0.6591 1.3616 7 6 1.2664 -0.3622 2.5290 8 6 1.3653 -1.8484 2.9115 9 1 0.4562 -2.2443 3.3641 10 7 2.5722 -2.1794 3.6731 11 6 2.4834 -2.4589 4.9886 12 8 1.4043 -2.4369 5.5417 13 6 3.7250 -2.7987 5.7722 14 6 3.3492 -3.0720 7.2300 15 8 4.5263 -3.3948 7.9729 16 6 4.3665 -3.6663 9.2949 17 6 3.1034 -3.6175 9.8665 18 6 2.9429 -3.8992 11.2094 19 6 4.0412 -4.2192 11.9858 20 6 3.8640 -4.5204 13.4518 21 8 4.5272 -3.5200 14.2272 22 14 2.0483 -4.5273 13.8693 23 6 5.3020 -4.2630 11.4198 24 6 5.4670 -3.9875 10.0763 25 6 1.4849 -2.1465 1.4075 26 1 -0.3633 0.6083 0.8283 27 1 -0.3634 0.4131 -0.9409 28 1 -0.3632 -1.0215 0.1126 29 1 3.1300 1.4427 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9565 0.8899 32 1 1.6768 -1.7490 -1.2490 33 1 1.6768 -0.2075 -2.1391 34 1 3.1301 -0.7208 -1.2493 35 1 0.2463 -0.0263 2.3429 36 1 1.8149 0.2987 3.2001 37 1 3.4353 -2.1973 3.2307 38 1 4.1924 -3.6862 5.3455 39 1 4.4232 -1.9630 5.7271 40 1 2.8815 -2.1848 7.6570 41 1 2.6511 -3.9079 7.2746 42 1 2.2458 -3.3632 9.2613 43 1 1.9592 -3.8655 11.6539 44 1 4.2922 -5.4974 13.6764 45 1 4.1967 -2.6235 14.0781 46 1 1.3418 -5.5417 13.0464 47 1 1.8601 -4.8226 15.3124 48 1 6.1583 -4.5129 12.0285 49 1 6.4520 -4.0214 9.6346 50 1 2.2100 -2.9259 1.1732 51 1 0.5246 -2.2983 0.9148 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_4549602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:38:04 Heat of formation + Delta-G solvation = -63.625295 kcal Electronic energy + Delta-G solvation = -27983.217802 eV Core-core repulsion = 24042.971322 eV Total energy + Delta-G solvation = -3940.246480 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.67747 -41.25968 -40.12679 -39.12701 -37.18214 -36.53553 -33.99454 -33.03100 -32.01283 -31.37863 -28.44249 -28.20207 -26.91762 -26.24177 -26.08847 -25.14431 -23.53997 -22.26431 -21.56342 -21.15918 -19.55277 -19.05541 -18.33739 -17.80529 -17.49160 -17.15240 -16.84600 -16.52002 -16.37292 -15.97865 -15.89148 -15.81295 -15.50971 -15.13924 -14.80943 -14.70070 -14.45250 -14.30468 -14.25051 -14.05741 -13.79804 -13.58875 -13.46481 -13.18654 -12.90603 -12.84525 -12.72287 -12.66442 -12.39260 -12.21724 -12.04896 -12.01267 -11.83899 -11.79129 -11.72232 -11.33297 -11.09123 -11.03839 -10.85619 -10.42000 -10.07468 -10.05352 -9.22913 -5.01706 0.27112 0.29320 1.31555 1.49782 1.61883 1.68759 1.94347 2.47352 2.64764 3.52600 3.54967 3.56679 3.58060 3.71241 3.77631 3.82668 3.84048 3.88458 3.92341 4.01718 4.09252 4.25034 4.28448 4.30819 4.33139 4.42914 4.49522 4.57418 4.64404 4.67516 4.74534 4.75771 4.76893 4.79832 4.83615 4.87430 4.96571 4.98241 5.00729 5.04633 5.15243 5.16664 5.17849 5.22781 5.26668 5.27780 5.42382 5.48163 5.48455 5.51799 5.70273 5.70854 6.30891 6.45808 6.77893 7.15069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.090 4.090 6 H 0.096 0.904 7 C -0.149 4.149 8 C 0.112 3.888 9 H 0.080 0.920 10 N -0.698 5.698 11 C 0.521 3.479 12 O -0.583 6.583 13 C -0.132 4.132 14 C 0.073 3.927 15 O -0.321 6.321 16 C 0.123 3.877 17 C -0.210 4.210 18 C -0.078 4.078 19 C -0.162 4.162 20 C -0.066 4.066 21 O -0.556 6.556 22 Si 0.768 3.232 23 C -0.060 4.060 24 C -0.159 4.159 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.107 0.893 45 H 0.395 0.605 46 H -0.290 1.290 47 H -0.298 1.298 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.081 0.919 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 2.562 -5.378 6.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.108 4.108 6 H 0.114 0.886 7 C -0.188 4.188 8 C 0.006 3.994 9 H 0.098 0.902 10 N -0.350 5.350 11 C 0.309 3.691 12 O -0.463 6.463 13 C -0.172 4.172 14 C -0.003 4.003 15 O -0.235 6.235 16 C 0.077 3.923 17 C -0.228 4.228 18 C -0.095 4.095 19 C -0.163 4.163 20 C -0.176 4.176 21 O -0.364 6.364 22 Si 0.674 3.326 23 C -0.078 4.078 24 C -0.177 4.177 25 C -0.172 4.172 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.124 0.876 45 H 0.245 0.755 46 H -0.217 1.217 47 H -0.226 1.226 48 H 0.157 0.843 49 H 0.159 0.841 50 H 0.100 0.900 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.490 1.614 -4.622 4.921 hybrid contribution 0.517 -0.323 -0.352 0.704 sum 1.007 1.292 -4.975 5.237 Atomic orbital electron populations 1.22045 0.94808 1.02145 1.01603 1.20418 0.95435 0.95208 0.94783 1.21844 1.00999 0.95500 1.01483 1.21831 1.01057 1.00326 0.96505 1.22588 0.99747 0.94996 0.93446 0.88580 1.23560 1.02000 0.95832 0.97358 1.21848 0.88374 0.96668 0.92473 0.90222 1.45547 1.11190 1.69701 1.08515 1.20658 0.90387 0.75431 0.82648 1.90734 1.31460 1.53768 1.70326 1.21433 0.96284 1.06963 0.92478 1.22451 0.85683 1.01191 0.90935 1.85955 1.35276 1.83888 1.18379 1.19188 0.94309 0.95632 0.83138 1.21428 0.96750 1.07738 0.96902 1.20990 0.98459 0.96844 0.93251 1.20329 0.94052 1.05259 0.96661 1.25042 1.10305 0.94169 0.88075 1.86460 1.64332 1.20324 1.65264 0.93808 0.74038 0.88449 0.76256 1.20982 0.97420 0.95919 0.93494 1.20669 0.98230 1.05240 0.93578 1.23411 1.03143 0.97516 0.93151 0.92481 0.92945 0.91928 0.92533 0.92989 0.92971 0.92300 0.93087 0.92502 0.88690 0.92007 0.74514 0.85570 0.85473 0.91399 0.91739 0.84178 0.83698 0.87566 0.75542 1.21669 1.22566 0.84293 0.84050 0.89998 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 7.53 71.98 0.54 1.06 16 2 C -0.06 0.25 0.68 -52.18 -0.04 0.21 16 3 C -0.14 0.44 8.42 71.98 0.61 1.05 16 4 C -0.14 0.59 8.33 71.98 0.60 1.19 16 5 C -0.09 0.49 2.90 -10.27 -0.03 0.46 16 6 H 0.10 -0.65 8.14 -2.38 -0.02 -0.67 16 7 C -0.15 0.40 7.04 31.12 0.22 0.62 16 8 C 0.11 -0.21 4.32 45.52 0.20 -0.02 16 9 H 0.08 0.25 7.47 -2.39 -0.02 0.23 16 10 N -0.70 2.78 5.26 -440.04 -2.32 0.47 16 11 C 0.52 0.33 7.83 87.66 0.69 1.01 16 12 O -0.58 -5.69 15.58 -3.02 -0.05 -5.74 16 13 C -0.13 0.59 6.07 29.85 0.18 0.77 16 14 C 0.07 0.04 4.03 71.98 0.29 0.33 16 15 O -0.32 -1.03 10.14 -92.45 -0.94 -1.97 16 16 C 0.12 0.52 6.69 22.51 0.15 0.67 16 17 C -0.21 -0.59 9.04 22.37 0.20 -0.39 16 18 C -0.08 -0.09 8.66 22.25 0.19 0.10 16 19 C -0.16 -0.31 5.35 -19.85 -0.11 -0.41 16 20 C -0.07 -0.06 2.80 71.24 0.20 0.14 16 21 O -0.56 -0.73 12.83 -148.98 -1.91 -2.64 16 22 Si 0.77 -0.38 29.80 68.60 2.04 1.67 16 23 C -0.06 -0.15 9.68 22.25 0.22 0.06 16 24 C -0.16 -0.51 9.99 22.37 0.22 -0.28 16 25 C -0.13 0.75 6.46 31.12 0.20 0.95 16 26 H 0.06 -0.16 6.44 -2.39 -0.02 -0.18 16 27 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 -0.26 6.00 -2.39 -0.01 -0.27 16 29 H 0.06 -0.20 8.14 -2.38 -0.02 -0.21 16 30 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.05 -0.12 8.06 -2.39 -0.02 -0.14 16 32 H 0.06 -0.27 7.60 -2.39 -0.02 -0.29 16 33 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.09 -0.20 5.73 -2.39 -0.01 -0.22 16 36 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.42 -4.12 8.70 -92.70 -0.81 -4.93 16 38 H 0.13 -1.02 8.14 -2.39 -0.02 -1.03 16 39 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.07 0.11 7.61 -2.39 -0.02 0.09 16 41 H 0.06 0.14 7.63 -2.39 -0.02 0.12 16 42 H 0.14 0.15 6.30 -2.91 -0.02 0.13 16 43 H 0.15 -0.45 4.90 -2.91 -0.01 -0.46 16 44 H 0.11 0.19 7.96 -2.38 -0.02 0.17 16 45 H 0.39 -2.59 8.70 -74.06 -0.64 -3.23 16 46 H -0.29 -1.37 7.11 99.48 0.71 -0.67 16 47 H -0.30 -2.00 7.11 99.48 0.71 -1.29 16 48 H 0.14 0.09 8.06 -2.92 -0.02 0.06 16 49 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 50 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 51 H 0.10 -0.54 6.02 -2.39 -0.01 -0.55 16 Total: 0.00 -17.32 400.30 0.89 -16.43 By element: Atomic # 1 Polarization: -15.26 SS G_CDS: -0.48 Total: -15.74 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.53 Total: 7.53 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.32 Total: 0.47 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -2.90 Total: -10.36 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: 2.04 Total: 1.67 kcal Total: -17.32 0.89 -16.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_4549602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.194 kcal (2) G-P(sol) polarization free energy of solvation -17.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds