Wall clock time and date at job start Sun Mar 7 2021 07:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47533 * 2 1 4 4 C 1.53007 * 109.47279 * 240.00165 * 2 1 3 5 5 C 1.53002 * 109.47362 * 119.99904 * 2 1 3 6 6 H 1.08999 * 112.85252 * 186.27632 * 5 2 1 7 7 C 1.54048 * 113.69629 * 317.55622 * 5 2 1 8 8 C 1.53782 * 86.98797 * 139.98516 * 7 5 2 9 9 H 1.09003 * 113.61278 * 219.98226 * 8 7 5 10 10 N 1.46501 * 113.61237 * 89.16070 * 8 7 5 11 11 C 1.34772 * 119.99645 * 105.86242 * 10 8 7 12 12 O 1.21616 * 120.00573 * 0.27534 * 11 10 8 13 13 C 1.47381 * 119.99821 * 179.97438 * 11 10 8 14 14 C 1.36419 * 127.19426 * 179.71310 * 13 11 10 15 15 C 1.50697 * 125.79883 * 359.97438 * 14 13 11 16 16 O 1.42892 * 109.47396 * 90.00067 * 15 14 13 17 17 C 1.35905 * 117.00296 * 179.97438 * 16 15 14 18 18 C 1.38729 * 120.05217 * 359.73552 * 17 16 15 19 19 C 1.38147 * 119.93927 * 179.74390 * 18 17 16 20 20 C 1.38268 * 120.05781 * 0.49562 * 19 18 17 21 21 C 1.50696 * 119.94528 * 179.74709 * 20 19 18 22 22 O 1.42895 * 109.47283 * 245.02707 * 21 20 19 23 23 Si 1.86301 * 109.47133 * 5.02682 * 21 20 19 24 24 C 1.38263 * 120.10878 * 359.77803 * 20 19 18 25 25 C 1.38142 * 120.05865 * 359.97314 * 24 20 19 26 26 O 1.33654 * 108.39643 * 179.83907 * 14 13 11 27 27 C 1.34215 * 110.90999 * 0.44344 * 26 14 13 28 28 C 1.34177 * 109.12354 * 359.72988 * 27 26 14 29 29 C 1.53783 * 87.17095 * 334.57060 * 8 7 5 30 30 H 1.09000 * 109.47013 * 306.28065 * 1 2 3 31 31 H 1.09002 * 109.47060 * 66.28248 * 1 2 3 32 32 H 1.08996 * 109.47364 * 186.28301 * 1 2 3 33 33 H 1.09002 * 109.47817 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46925 * 300.00329 * 3 2 1 35 35 H 1.09003 * 109.47221 * 60.00056 * 3 2 1 36 36 H 1.09004 * 109.46885 * 299.99894 * 4 2 1 37 37 H 1.08997 * 109.47122 * 60.00079 * 4 2 1 38 38 H 1.08995 * 109.47090 * 180.02562 * 4 2 1 39 39 H 1.08999 * 113.61326 * 25.47658 * 7 5 2 40 40 H 1.08999 * 113.69185 * 254.50289 * 7 5 2 41 41 H 0.96995 * 120.00244 * 285.86589 * 10 8 7 42 42 H 1.09002 * 109.46991 * 210.00608 * 15 14 13 43 43 H 1.09001 * 109.47417 * 329.99625 * 15 14 13 44 44 H 1.07996 * 120.03486 * 359.97438 * 18 17 16 45 45 H 1.08003 * 119.97369 * 180.22908 * 19 18 17 46 46 H 1.09004 * 109.46909 * 125.02609 * 21 20 19 47 47 H 0.96695 * 114.00271 * 60.00008 * 22 21 20 48 48 H 1.48505 * 109.99926 * 179.97438 * 23 21 20 49 49 H 1.48499 * 110.00041 * 301.31913 * 23 21 20 50 50 H 1.08002 * 119.96809 * 179.97438 * 24 20 19 51 51 H 1.07998 * 120.03179 * 179.97438 * 25 24 20 52 52 H 1.07996 * 125.43701 * 179.74773 * 27 26 14 53 53 H 1.07995 * 127.02344 * 180.02562 * 28 27 26 54 54 H 1.09001 * 113.61444 * 140.02436 * 29 8 7 55 55 H 1.09003 * 113.61124 * 270.84073 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1224 -0.6593 1.3615 7 6 1.2650 -0.3621 2.5312 8 6 1.3653 -1.8489 2.9112 9 1 0.4568 -2.2461 3.3640 10 7 2.5722 -2.1798 3.6729 11 6 2.4876 -2.4292 4.9946 12 8 1.4087 -2.3845 5.5541 13 6 3.7017 -2.7626 5.7608 14 6 3.7862 -3.0342 7.0950 15 6 2.6345 -3.0467 8.0667 16 8 2.0706 -4.3585 8.1204 17 6 1.0148 -4.5427 8.9560 18 6 0.5350 -3.4838 9.7130 19 6 -0.5417 -3.6723 10.5578 20 6 -1.1345 -4.9175 10.6569 21 6 -2.3053 -5.1217 11.5835 22 8 -1.9355 -6.0261 12.6262 23 14 -2.8017 -3.4869 12.3265 24 6 -0.6545 -5.9758 9.9077 25 6 0.4186 -5.7913 9.0576 26 8 5.0637 -3.2902 7.3932 27 6 5.8396 -3.1894 6.3027 28 6 5.0758 -2.8658 5.2481 29 6 1.4850 -2.1467 1.4073 30 1 -0.3633 0.6081 0.8284 31 1 -0.3633 0.4134 -0.9409 32 1 -0.3634 -1.0214 0.1125 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2490 39 1 0.2447 -0.0268 2.3452 40 1 1.8126 0.2983 3.2036 41 1 3.4322 -2.2193 3.2259 42 1 2.9916 -2.7638 9.0570 43 1 1.8744 -2.3376 7.7385 44 1 1.0004 -2.5120 9.6393 45 1 -0.9180 -2.8474 11.1446 46 1 -3.1438 -5.5359 11.0236 47 1 -1.1938 -5.7213 13.1665 48 1 -3.9559 -3.6746 13.2419 49 1 -1.6571 -2.8966 13.0658 50 1 -1.1191 -6.9476 9.9872 51 1 0.7935 -6.6183 8.4729 52 1 6.9081 -3.3443 6.2780 53 1 5.4033 -2.7130 4.2304 54 1 2.2101 -2.9261 1.1728 55 1 0.5247 -2.2999 0.9147 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:38:27 Heat of formation + Delta-G solvation = -33.914123 kcal Electronic energy + Delta-G solvation = -35519.341011 eV Core-core repulsion = 30877.022291 eV Total energy + Delta-G solvation = -4642.318720 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.73663 -41.52469 -41.31386 -39.89567 -39.26373 -37.32374 -36.53103 -34.44217 -33.35694 -32.78176 -32.00511 -31.41785 -28.43349 -28.20910 -28.02445 -26.39154 -26.23733 -26.03076 -24.46267 -23.81761 -22.52127 -22.29408 -21.28127 -20.82048 -19.53234 -19.23615 -19.01415 -18.38187 -17.51389 -17.26373 -17.08250 -16.97817 -16.71801 -16.44995 -16.32700 -16.13828 -15.88890 -15.79973 -15.62294 -15.33937 -15.05936 -14.78209 -14.64625 -14.40845 -14.30764 -14.19071 -13.87088 -13.78953 -13.65212 -13.50484 -13.45903 -13.19008 -13.09145 -12.75537 -12.66865 -12.38139 -12.34147 -12.15977 -12.09014 -12.00303 -11.83578 -11.63172 -11.34196 -11.12235 -11.09246 -10.98105 -10.85877 -10.59474 -10.11614 -10.07121 -9.83753 -9.27388 -4.91778 -0.05577 0.24639 0.27658 1.01763 1.31684 1.49744 1.58563 1.94118 2.02507 2.10942 2.45013 2.61714 3.32724 3.43878 3.52305 3.57742 3.59062 3.66676 3.69377 3.77123 3.78764 3.88341 3.88912 3.91866 4.09447 4.09998 4.27180 4.28868 4.31316 4.40297 4.44036 4.52882 4.53424 4.60238 4.67523 4.75405 4.77066 4.78752 4.80603 4.84455 4.87130 4.93722 4.98872 5.00992 5.05185 5.12383 5.15838 5.17183 5.23194 5.23498 5.25623 5.26936 5.43018 5.45398 5.48269 5.52980 5.66777 5.69809 5.87097 6.23726 6.43979 6.49545 7.10317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.088 4.088 6 H 0.095 0.905 7 C -0.147 4.147 8 C 0.113 3.887 9 H 0.080 0.920 10 N -0.689 5.689 11 C 0.585 3.415 12 O -0.570 6.570 13 C -0.223 4.223 14 C 0.040 3.960 15 C 0.135 3.865 16 O -0.322 6.322 17 C 0.124 3.876 18 C -0.206 4.206 19 C -0.077 4.077 20 C -0.157 4.157 21 C -0.077 4.077 22 O -0.549 6.549 23 Si 0.763 3.237 24 C -0.057 4.057 25 C -0.163 4.163 26 O -0.178 6.178 27 C -0.012 4.012 28 C -0.197 4.197 29 C -0.133 4.133 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.414 0.586 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.124 0.876 47 H 0.385 0.615 48 H -0.302 1.302 49 H -0.280 1.280 50 H 0.141 0.859 51 H 0.133 0.867 52 H 0.252 0.748 53 H 0.191 0.809 54 H 0.080 0.920 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 3.501 -5.269 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.106 4.106 6 H 0.113 0.887 7 C -0.185 4.185 8 C 0.008 3.992 9 H 0.098 0.902 10 N -0.340 5.340 11 C 0.373 3.627 12 O -0.451 6.451 13 C -0.228 4.228 14 C -0.013 4.013 15 C 0.061 3.939 16 O -0.237 6.237 17 C 0.080 3.920 18 C -0.224 4.224 19 C -0.095 4.095 20 C -0.158 4.158 21 C -0.186 4.186 22 O -0.357 6.357 23 Si 0.668 3.332 24 C -0.075 4.075 25 C -0.181 4.181 26 O -0.073 6.073 27 C -0.077 4.077 28 C -0.216 4.216 29 C -0.171 4.171 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.251 0.749 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.142 0.858 47 H 0.235 0.765 48 H -0.230 1.230 49 H -0.206 1.206 50 H 0.158 0.842 51 H 0.151 0.849 52 H 0.268 0.732 53 H 0.208 0.792 54 H 0.099 0.901 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.507 3.448 -4.280 6.519 hybrid contribution 1.217 -0.495 0.330 1.355 sum 4.723 2.952 -3.950 6.829 Atomic orbital electron populations 1.22047 0.94742 1.02181 1.01661 1.20408 0.95486 0.95190 0.94653 1.21843 1.00978 0.95479 1.01513 1.21836 1.01052 1.00333 0.96505 1.22626 0.99658 0.94873 0.93489 0.88717 1.23603 1.02107 0.95537 0.97281 1.21889 0.87919 0.96945 0.92489 0.90165 1.45331 1.11510 1.69869 1.07306 1.17431 0.87013 0.75813 0.82416 1.90774 1.30013 1.53923 1.70346 1.21380 0.95503 1.12303 0.93570 1.22055 0.83775 1.01351 0.94095 1.21142 0.90476 0.84420 0.97858 1.86049 1.44814 1.31899 1.60932 1.19192 0.87614 0.95030 0.90208 1.21404 1.00964 0.99219 1.00831 1.21050 0.94339 0.96799 0.97298 1.20271 1.00091 0.94182 1.01230 1.25152 0.97535 1.05624 0.90303 1.86564 1.55903 1.46988 1.46238 0.94044 0.77543 0.77432 0.84179 1.20961 0.94059 0.99427 0.93034 1.20632 0.98750 0.95596 1.03139 1.83794 1.16826 1.68319 1.38383 1.24910 0.98543 1.02009 0.82249 1.23246 0.89340 1.06685 1.02302 1.23411 1.03278 0.97572 0.92857 0.92438 0.92857 0.91924 0.92564 0.92892 0.92992 0.92320 0.92992 0.92510 0.88382 0.92151 0.74902 0.88268 0.87373 0.83546 0.83451 0.85822 0.76538 1.22979 1.20620 0.84162 0.84894 0.73186 0.79166 0.90121 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 7.53 71.98 0.54 1.02 16 2 C -0.06 0.22 0.68 -52.18 -0.04 0.18 16 3 C -0.14 0.41 8.42 71.98 0.61 1.01 16 4 C -0.14 0.56 8.33 71.98 0.60 1.16 16 5 C -0.09 0.40 2.92 -10.17 -0.03 0.37 16 6 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 7 C -0.15 0.22 7.06 31.21 0.22 0.44 16 8 C 0.11 0.02 4.30 45.52 0.20 0.22 16 9 H 0.08 0.41 7.50 -2.39 -0.02 0.40 16 10 N -0.69 -0.09 5.26 -443.33 -2.33 -2.42 16 11 C 0.58 3.91 7.81 86.65 0.68 4.59 16 12 O -0.57 -7.80 14.47 -4.08 -0.06 -7.86 16 13 C -0.22 -0.92 6.31 -18.99 -0.12 -1.04 16 14 C 0.04 0.22 7.00 25.26 0.18 0.40 16 15 C 0.14 0.73 4.73 71.24 0.34 1.07 16 16 O -0.32 -3.16 10.12 -92.48 -0.94 -4.09 16 17 C 0.12 0.99 6.69 22.51 0.15 1.14 16 18 C -0.21 -0.85 9.04 22.37 0.20 -0.65 16 19 C -0.08 -0.16 8.66 22.26 0.19 0.03 16 20 C -0.16 -0.47 5.35 -19.85 -0.11 -0.58 16 21 C -0.08 -0.10 2.80 71.23 0.20 0.10 16 22 O -0.55 -2.30 12.83 -148.98 -1.91 -4.22 16 23 Si 0.76 -0.32 29.88 68.60 2.05 1.73 16 24 C -0.06 -0.26 9.68 22.25 0.22 -0.05 16 25 C -0.16 -1.13 9.99 22.37 0.22 -0.90 16 26 O -0.18 -0.52 10.52 4.45 0.05 -0.48 16 27 C -0.01 0.05 12.03 66.89 0.80 0.85 16 28 C -0.20 0.66 10.60 23.65 0.25 0.91 16 29 C -0.13 0.56 6.45 31.12 0.20 0.76 16 30 H 0.06 -0.15 6.44 -2.39 -0.02 -0.17 16 31 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 -0.24 6.00 -2.39 -0.01 -0.25 16 33 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.05 -0.10 8.06 -2.39 -0.02 -0.12 16 36 H 0.06 -0.25 7.60 -2.38 -0.02 -0.27 16 37 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.10 -0.14 5.74 -2.39 -0.01 -0.16 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.41 -2.30 7.87 -92.71 -0.73 -3.03 16 42 H 0.10 0.07 7.65 -2.39 -0.02 0.05 16 43 H 0.11 0.69 6.03 -2.39 -0.01 0.67 16 44 H 0.15 0.03 6.30 -2.91 -0.02 0.01 16 45 H 0.15 -0.34 4.83 -2.91 -0.01 -0.35 16 46 H 0.12 -0.03 7.96 -2.38 -0.02 -0.04 16 47 H 0.39 -0.52 8.70 -74.06 -0.64 -1.16 16 48 H -0.30 -2.13 7.11 99.48 0.71 -1.42 16 49 H -0.28 -0.75 7.00 99.48 0.70 -0.06 16 50 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 51 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 52 H 0.25 -3.33 8.06 -2.91 -0.02 -3.35 16 53 H 0.19 -2.00 7.74 -2.91 -0.02 -2.02 16 54 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 55 H 0.10 -0.47 6.03 -2.39 -0.01 -0.48 16 Total: 0.00 -20.87 437.34 1.95 -18.93 By element: Atomic # 1 Polarization: -12.21 SS G_CDS: -0.42 Total: -12.63 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.50 Total: 11.04 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -2.33 Total: -2.42 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -2.86 Total: -16.64 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: 2.05 Total: 1.73 kcal Total: -20.87 1.95 -18.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.985 kcal (2) G-P(sol) polarization free energy of solvation -20.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds