Wall clock time and date at job start Sun Mar 7 2021 07:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33818 * 122.44971 * 2 1 4 4 C 1.50701 * 124.51835 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47523 * 329.99921 * 4 3 2 6 6 Si 1.86299 * 109.46817 * 209.99938 * 4 3 2 7 7 S 1.70609 * 110.95641 * 180.02562 * 3 2 1 8 8 C 1.75829 * 91.56472 * 359.97438 * 7 3 2 9 9 C 1.46578 * 125.46026 * 179.97438 * 8 7 3 10 10 O 1.21702 * 120.00438 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99980 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00167 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.84886 * 23.79531 * 12 11 9 14 14 C 1.53774 * 113.61594 * 155.00187 * 12 11 9 15 15 C 1.53782 * 87.08495 * 89.19622 * 14 12 11 16 16 H 1.08997 * 113.61674 * 270.88475 * 15 14 12 17 17 C 1.52995 * 113.61540 * 139.97797 * 15 14 12 18 18 C 1.52998 * 109.47080 * 63.71946 * 17 15 14 19 19 C 1.53005 * 109.47293 * 183.72006 * 17 15 14 20 20 C 1.53002 * 109.47252 * 303.71956 * 17 15 14 21 21 C 1.53784 * 87.08070 * 25.43172 * 15 14 12 22 22 C 1.36648 * 109.08287 * 0.24077 * 8 7 3 23 23 H 1.08999 * 109.47391 * 90.00462 * 1 2 3 24 24 H 1.09000 * 109.47348 * 209.99928 * 1 2 3 25 25 H 1.08994 * 109.47626 * 330.00281 * 1 2 3 26 26 H 1.08995 * 109.47122 * 90.00200 * 4 3 2 27 27 H 0.96702 * 114.00231 * 300.00250 * 5 4 3 28 28 H 1.48501 * 109.99980 * 180.02562 * 6 4 3 29 29 H 1.48497 * 110.00311 * 301.31695 * 6 4 3 30 30 H 0.96998 * 119.99960 * 0.02562 * 11 9 8 31 31 H 1.08996 * 113.61505 * 334.64783 * 14 12 11 32 32 H 1.09000 * 113.68991 * 203.75637 * 14 12 11 33 33 H 1.09004 * 109.47400 * 59.99632 * 18 17 15 34 34 H 1.09003 * 109.47399 * 180.02562 * 18 17 15 35 35 H 1.09005 * 109.47365 * 299.99995 * 18 17 15 36 36 H 1.08995 * 109.46879 * 59.99666 * 19 17 15 37 37 H 1.08995 * 109.47294 * 180.02562 * 19 17 15 38 38 H 1.09004 * 109.46548 * 299.99976 * 19 17 15 39 39 H 1.08996 * 109.47394 * 53.49074 * 20 17 15 40 40 H 1.09000 * 109.47002 * 173.48933 * 20 17 15 41 41 H 1.08997 * 109.46973 * 293.48973 * 20 17 15 42 42 H 1.09003 * 113.61596 * 89.11454 * 21 15 14 43 43 H 1.08999 * 113.61914 * 220.02377 * 21 15 14 44 44 H 1.08003 * 123.35110 * 179.75410 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5161 -0.0006 5 8 0.3755 2.4979 -0.6746 6 14 2.7927 3.6825 -0.8786 7 16 3.8969 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0002 9 6 4.6231 -1.9861 -0.0010 10 8 4.3002 -3.1595 -0.0011 11 7 5.9273 -1.6461 -0.0017 12 6 6.9562 -2.6890 -0.0031 13 1 6.5989 -3.6355 -0.4087 14 6 8.2975 -2.2304 -0.5992 15 6 8.6839 -1.7792 0.8193 16 1 8.3912 -0.7542 1.0464 17 6 10.1402 -2.0769 1.1817 18 6 11.0677 -1.2796 0.2625 19 6 10.3960 -1.6764 2.6361 20 6 10.4133 -3.5724 1.0090 21 6 7.6919 -2.8328 1.3397 22 6 2.2446 -1.1601 -0.0050 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 1.4929 2.8507 1.0269 27 1 0.4266 2.2093 -1.5962 28 1 2.2230 5.0538 -0.8855 29 1 4.1166 3.6865 -0.2061 30 1 6.1847 -0.7109 -0.0013 31 1 8.2018 -1.4079 -1.3080 32 1 8.9101 -3.0478 -0.9795 33 1 10.8731 -0.2142 0.3855 34 1 12.1053 -1.4920 0.5203 35 1 10.8855 -1.5649 -0.7737 36 1 9.7352 -2.2444 3.2909 37 1 11.4336 -1.8881 2.8941 38 1 10.2015 -0.6110 2.7590 39 1 10.1216 -3.8815 0.0053 40 1 11.4759 -3.7669 1.1545 41 1 9.8371 -4.1342 1.7441 42 1 8.1380 -3.8160 1.4900 43 1 7.1073 -2.4968 2.1960 44 1 1.8020 -2.1452 -0.0096 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17664192_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:39:28 Heat of formation + Delta-G solvation = -24.140489 kcal Electronic energy + Delta-G solvation = -23664.570263 eV Core-core repulsion = 20289.408031 eV Total energy + Delta-G solvation = -3375.162232 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63351 -40.38694 -39.56887 -37.39051 -36.51104 -33.81902 -31.98153 -30.26761 -28.55921 -28.30099 -27.09015 -26.32360 -25.54792 -24.36774 -21.96169 -21.25709 -20.14745 -19.48104 -19.08478 -17.70934 -17.37547 -16.93902 -16.50026 -16.41095 -16.12209 -15.92429 -15.55971 -15.21369 -15.10440 -14.60499 -14.48069 -14.34494 -14.00104 -13.89018 -13.61963 -13.47490 -13.26296 -13.10894 -13.01081 -12.82580 -12.76007 -12.49903 -12.46809 -12.27497 -12.10264 -11.93677 -11.79117 -11.42386 -11.18549 -11.03920 -10.93289 -10.75056 -10.11431 -9.69167 -9.46169 -5.21914 -0.63322 0.26491 0.68680 1.05258 1.31874 1.42840 1.79790 2.00354 2.18130 3.20977 3.44848 3.47959 3.52575 3.66820 3.71495 3.83053 3.98712 4.08876 4.18750 4.20618 4.23342 4.40400 4.46997 4.56885 4.63423 4.68213 4.69742 4.73027 4.75889 4.79910 4.86664 4.88694 4.92196 4.96402 5.02797 5.04972 5.06277 5.12324 5.17666 5.31868 5.37740 5.39820 5.41174 5.44595 5.61634 6.35003 6.37567 7.11833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.090 4.090 3 C -0.237 4.237 4 C -0.027 4.027 5 O -0.529 6.529 6 Si 0.659 3.341 7 S 0.192 5.808 8 C -0.262 4.262 9 C 0.595 3.405 10 O -0.524 6.524 11 N -0.709 5.709 12 C 0.119 3.881 13 H 0.105 0.895 14 C -0.144 4.144 15 C -0.100 4.100 16 H 0.087 0.913 17 C -0.059 4.059 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.046 4.046 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.381 0.619 28 H -0.234 1.234 29 H -0.237 1.237 30 H 0.398 0.602 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 2.641 -2.225 4.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.356 4.356 4 C -0.140 4.140 5 O -0.335 6.335 6 Si 0.558 3.442 7 S 0.460 5.540 8 C -0.382 4.382 9 C 0.381 3.619 10 O -0.401 6.401 11 N -0.360 5.360 12 C 0.014 3.986 13 H 0.123 0.877 14 C -0.181 4.181 15 C -0.118 4.118 16 H 0.105 0.895 17 C -0.059 4.059 18 C -0.199 4.199 19 C -0.199 4.199 20 C -0.205 4.205 21 C -0.190 4.190 22 C -0.079 4.079 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.141 0.859 27 H 0.229 0.771 28 H -0.157 1.157 29 H -0.162 1.162 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.550 3.638 -1.588 5.325 hybrid contribution -1.315 -0.657 0.600 1.588 sum 2.235 2.980 -0.987 3.854 Atomic orbital electron populations 1.20643 0.88496 1.03388 1.02891 1.18723 0.98474 0.90459 1.02647 1.24469 0.98353 1.00958 1.11805 1.24463 0.92245 0.95295 1.02011 1.86531 1.27684 1.90030 1.29256 0.94803 0.78190 0.80758 0.90438 1.83024 1.03366 0.98377 1.69209 1.24562 0.97998 0.96979 1.18648 1.16930 0.81540 0.87429 0.75992 1.90858 1.81538 1.18166 1.49522 1.45532 1.05054 1.09777 1.75640 1.21871 0.86952 0.92070 0.97683 0.87665 1.23461 0.95500 1.02208 0.96970 1.22655 0.94256 0.99021 0.95886 0.89495 1.20423 0.94053 0.95759 0.95653 1.21854 0.98977 0.99748 0.99293 1.21852 1.01578 1.01202 0.95256 1.22040 1.01588 0.94945 1.01964 1.23615 0.97387 1.00606 0.97358 1.20750 0.90893 1.00190 0.96060 0.90882 0.91906 0.89686 0.85891 0.77089 1.15708 1.16159 0.76761 0.90880 0.88071 0.92756 0.92647 0.92510 0.92597 0.92627 0.92786 0.92222 0.92597 0.92203 0.88238 0.91206 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.07 8.67 36.00 0.31 0.38 16 2 C -0.09 -0.03 5.75 -106.45 -0.61 -0.65 16 3 C -0.24 0.09 5.53 -35.86 -0.20 -0.11 16 4 C -0.03 0.04 2.76 36.01 0.10 0.14 16 5 O -0.53 0.78 9.85 -35.23 -0.35 0.43 16 6 Si 0.66 -1.32 31.32 -169.99 -5.32 -6.65 16 7 S 0.19 -0.12 19.78 -107.50 -2.13 -2.24 16 8 C -0.26 -0.44 6.45 -36.79 -0.24 -0.68 16 9 C 0.59 1.88 7.78 -12.90 -0.10 1.78 16 10 O -0.52 -3.53 16.44 5.19 0.09 -3.45 16 11 N -0.71 -0.34 5.26 -54.35 -0.29 -0.63 16 12 C 0.12 0.02 4.32 -67.12 -0.29 -0.27 16 13 H 0.11 0.18 7.46 -51.93 -0.39 -0.21 16 14 C -0.14 0.24 6.40 -25.92 -0.17 0.08 16 15 C -0.10 0.16 2.92 -89.81 -0.26 -0.11 16 16 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 17 C -0.06 0.08 0.68 -154.51 -0.11 -0.02 16 18 C -0.14 0.20 8.31 37.16 0.31 0.51 16 19 C -0.14 0.13 8.43 37.16 0.31 0.45 16 20 C -0.15 0.20 7.48 37.16 0.28 0.48 16 21 C -0.15 0.07 7.09 -25.91 -0.18 -0.11 16 22 C -0.05 -0.07 9.80 -40.43 -0.40 -0.47 16 23 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 25 H 0.08 0.00 6.42 -51.93 -0.33 -0.34 16 26 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.38 -1.82 8.66 45.56 0.39 -1.43 16 28 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 29 H -0.24 0.09 7.09 56.52 0.40 0.49 16 30 H 0.40 -0.59 7.82 -40.82 -0.32 -0.91 16 31 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 32 H 0.10 -0.21 6.09 -51.93 -0.32 -0.52 16 33 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.06 -0.09 7.57 -51.93 -0.39 -0.48 16 36 H 0.05 -0.03 8.10 -51.93 -0.42 -0.45 16 37 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 38 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 39 H 0.06 -0.10 6.05 -51.93 -0.31 -0.41 16 40 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 41 H 0.06 -0.07 6.46 -51.93 -0.34 -0.41 16 42 H 0.10 -0.08 5.69 -51.93 -0.30 -0.37 16 43 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.16 0.24 8.06 -52.48 -0.42 -0.18 16 LS Contribution 356.98 15.07 5.38 5.38 Total: 0.00 -5.42 356.98 -10.84 -16.26 By element: Atomic # 1 Polarization: -3.52 SS G_CDS: -6.98 Total: -10.50 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.24 Total: 1.39 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -0.29 Total: -0.63 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -0.26 Total: -3.02 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.32 Total: -6.65 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.13 Total: -2.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -5.42 -10.84 -16.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.877 kcal (2) G-P(sol) polarization free energy of solvation -5.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds