Wall clock time and date at job start Sun Mar 7 2021 07:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33818 * 122.44971 * 2 1 4 4 C 1.50701 * 124.51835 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47523 * 329.99921 * 4 3 2 6 6 Si 1.86299 * 109.46817 * 209.99938 * 4 3 2 7 7 S 1.70609 * 110.95641 * 180.02562 * 3 2 1 8 8 C 1.75829 * 91.56472 * 359.97438 * 7 3 2 9 9 C 1.46578 * 125.46026 * 179.97438 * 8 7 3 10 10 O 1.21702 * 120.00438 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99980 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00167 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.84886 * 23.79531 * 12 11 9 14 14 C 1.53774 * 113.61594 * 155.00187 * 12 11 9 15 15 C 1.53782 * 87.08495 * 89.19622 * 14 12 11 16 16 H 1.08997 * 113.61674 * 270.88475 * 15 14 12 17 17 C 1.52995 * 113.61540 * 139.97797 * 15 14 12 18 18 C 1.52998 * 109.47080 * 63.71946 * 17 15 14 19 19 C 1.53005 * 109.47293 * 183.72006 * 17 15 14 20 20 C 1.53002 * 109.47252 * 303.71956 * 17 15 14 21 21 C 1.53784 * 87.08070 * 25.43172 * 15 14 12 22 22 C 1.36648 * 109.08287 * 0.24077 * 8 7 3 23 23 H 1.08999 * 109.47391 * 90.00462 * 1 2 3 24 24 H 1.09000 * 109.47348 * 209.99928 * 1 2 3 25 25 H 1.08994 * 109.47626 * 330.00281 * 1 2 3 26 26 H 1.08995 * 109.47122 * 90.00200 * 4 3 2 27 27 H 0.96702 * 114.00231 * 300.00250 * 5 4 3 28 28 H 1.48501 * 109.99980 * 180.02562 * 6 4 3 29 29 H 1.48497 * 110.00311 * 301.31695 * 6 4 3 30 30 H 0.96998 * 119.99960 * 0.02562 * 11 9 8 31 31 H 1.08996 * 113.61505 * 334.64783 * 14 12 11 32 32 H 1.09000 * 113.68991 * 203.75637 * 14 12 11 33 33 H 1.09004 * 109.47400 * 59.99632 * 18 17 15 34 34 H 1.09003 * 109.47399 * 180.02562 * 18 17 15 35 35 H 1.09005 * 109.47365 * 299.99995 * 18 17 15 36 36 H 1.08995 * 109.46879 * 59.99666 * 19 17 15 37 37 H 1.08995 * 109.47294 * 180.02562 * 19 17 15 38 38 H 1.09004 * 109.46548 * 299.99976 * 19 17 15 39 39 H 1.08996 * 109.47394 * 53.49074 * 20 17 15 40 40 H 1.09000 * 109.47002 * 173.48933 * 20 17 15 41 41 H 1.08997 * 109.46973 * 293.48973 * 20 17 15 42 42 H 1.09003 * 113.61596 * 89.11454 * 21 15 14 43 43 H 1.08999 * 113.61914 * 220.02377 * 21 15 14 44 44 H 1.08003 * 123.35110 * 179.75410 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5161 -0.0006 5 8 0.3755 2.4979 -0.6746 6 14 2.7927 3.6825 -0.8786 7 16 3.8969 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0002 9 6 4.6231 -1.9861 -0.0010 10 8 4.3002 -3.1595 -0.0011 11 7 5.9273 -1.6461 -0.0017 12 6 6.9562 -2.6890 -0.0031 13 1 6.5989 -3.6355 -0.4087 14 6 8.2975 -2.2304 -0.5992 15 6 8.6839 -1.7792 0.8193 16 1 8.3912 -0.7542 1.0464 17 6 10.1402 -2.0769 1.1817 18 6 11.0677 -1.2796 0.2625 19 6 10.3960 -1.6764 2.6361 20 6 10.4133 -3.5724 1.0090 21 6 7.6919 -2.8328 1.3397 22 6 2.2446 -1.1601 -0.0050 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 1.4929 2.8507 1.0269 27 1 0.4266 2.2093 -1.5962 28 1 2.2230 5.0538 -0.8855 29 1 4.1166 3.6865 -0.2061 30 1 6.1847 -0.7109 -0.0013 31 1 8.2018 -1.4079 -1.3080 32 1 8.9101 -3.0478 -0.9795 33 1 10.8731 -0.2142 0.3855 34 1 12.1053 -1.4920 0.5203 35 1 10.8855 -1.5649 -0.7737 36 1 9.7352 -2.2444 3.2909 37 1 11.4336 -1.8881 2.8941 38 1 10.2015 -0.6110 2.7590 39 1 10.1216 -3.8815 0.0053 40 1 11.4759 -3.7669 1.1545 41 1 9.8371 -4.1342 1.7441 42 1 8.1380 -3.8160 1.4900 43 1 7.1073 -2.4968 2.1960 44 1 1.8020 -2.1452 -0.0096 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664192_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:39:27 Heat of formation + Delta-G solvation = -18.191269 kcal Electronic energy + Delta-G solvation = -23664.312286 eV Core-core repulsion = 20289.408031 eV Total energy + Delta-G solvation = -3374.904255 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67994 -40.43084 -39.63215 -37.32251 -36.54662 -33.92927 -31.99336 -30.21874 -28.46215 -28.20933 -27.11725 -26.26120 -25.51365 -24.37953 -22.05363 -21.28447 -20.13484 -19.52231 -19.04026 -17.67897 -17.41056 -16.95273 -16.53596 -16.35134 -16.12438 -16.00957 -15.54223 -15.22706 -15.10421 -14.58532 -14.47125 -14.31611 -13.96511 -13.80577 -13.59262 -13.45258 -13.21687 -13.10850 -12.97879 -12.79034 -12.69354 -12.44823 -12.40376 -12.25567 -12.03375 -11.86594 -11.78752 -11.41170 -11.20916 -11.12721 -10.89282 -10.68008 -10.22781 -9.70338 -9.44558 -5.07337 -0.70374 0.24329 0.67067 1.09247 1.30718 1.53492 1.88744 1.91719 2.01918 3.35683 3.48776 3.54012 3.58250 3.68363 3.75491 3.84603 4.07091 4.07842 4.24553 4.25820 4.29113 4.43566 4.53164 4.58207 4.68350 4.73772 4.77768 4.79398 4.82362 4.85322 4.90767 4.96099 4.98287 5.00769 5.02878 5.11530 5.13923 5.21436 5.23638 5.37783 5.39979 5.44381 5.47328 5.51250 5.65858 6.28577 6.66361 6.96685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.233 4.233 4 C -0.031 4.031 5 O -0.539 6.539 6 Si 0.729 3.271 7 S 0.234 5.766 8 C -0.284 4.284 9 C 0.591 3.409 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.110 3.890 13 H 0.086 0.914 14 C -0.132 4.132 15 C -0.092 4.092 16 H 0.092 0.908 17 C -0.057 4.057 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.054 4.054 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.396 0.604 28 H -0.273 1.273 29 H -0.254 1.254 30 H 0.409 0.591 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.678 3.833 -2.769 5.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.353 4.353 4 C -0.143 4.143 5 O -0.347 6.347 6 Si 0.631 3.369 7 S 0.502 5.498 8 C -0.404 4.404 9 C 0.379 3.621 10 O -0.451 6.451 11 N -0.347 5.347 12 C 0.005 3.995 13 H 0.104 0.896 14 C -0.169 4.169 15 C -0.110 4.110 16 H 0.110 0.890 17 C -0.057 4.057 18 C -0.198 4.198 19 C -0.199 4.199 20 C -0.206 4.206 21 C -0.188 4.188 22 C -0.088 4.088 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.140 0.860 27 H 0.246 0.754 28 H -0.198 1.198 29 H -0.180 1.180 30 H 0.245 0.755 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.105 4.839 -2.141 6.697 hybrid contribution -1.493 -0.971 0.791 1.948 sum 2.612 3.868 -1.350 4.859 Atomic orbital electron populations 1.20628 0.87795 1.02994 1.03618 1.18772 0.99021 0.90175 1.03169 1.24692 0.98647 1.01288 1.10657 1.24601 0.92660 0.94724 1.02335 1.86508 1.27536 1.90057 1.30580 0.93978 0.75926 0.77813 0.89147 1.82813 1.02788 0.95960 1.68198 1.24529 0.97734 0.98256 1.19888 1.17194 0.82428 0.87134 0.75358 1.90824 1.82299 1.20013 1.51967 1.45462 1.04393 1.10507 1.74365 1.21950 0.87504 0.91478 0.98540 0.89604 1.23418 0.93853 1.02625 0.97035 1.22603 0.93859 0.98826 0.95708 0.88973 1.20399 0.94062 0.95753 0.95439 1.21843 0.98723 0.99791 0.99412 1.21856 1.01376 1.01211 0.95493 1.22048 1.01441 0.94974 1.02166 1.23602 0.97517 1.01209 0.96498 1.20821 0.91212 1.00419 0.96358 0.89620 0.92166 0.90120 0.86050 0.75359 1.19821 1.18009 0.75461 0.89863 0.87443 0.92573 0.92910 0.92094 0.93074 0.92766 0.92648 0.91755 0.92759 0.92511 0.88050 0.92360 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.14 8.67 71.24 0.62 0.76 16 2 C -0.10 -0.08 5.75 -21.05 -0.12 -0.20 16 3 C -0.23 0.31 5.53 24.68 0.14 0.45 16 4 C -0.03 0.11 2.76 71.24 0.20 0.30 16 5 O -0.54 2.07 9.85 -148.98 -1.47 0.60 16 6 Si 0.73 -3.55 31.32 68.60 2.15 -1.40 16 7 S 0.23 -0.43 19.78 -56.49 -1.12 -1.54 16 8 C -0.28 -1.18 6.45 24.07 0.16 -1.02 16 9 C 0.59 4.57 7.78 86.42 0.67 5.25 16 10 O -0.57 -9.08 16.44 -4.36 -0.07 -9.16 16 11 N -0.70 -1.09 5.26 -444.08 -2.34 -3.43 16 12 C 0.11 0.11 4.32 45.52 0.20 0.31 16 13 H 0.09 0.45 7.46 -2.39 -0.02 0.44 16 14 C -0.13 0.52 6.40 31.12 0.20 0.72 16 15 C -0.09 0.33 2.92 -10.27 -0.03 0.30 16 16 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 17 C -0.06 0.18 0.68 -52.18 -0.04 0.15 16 18 C -0.14 0.51 8.31 71.98 0.60 1.11 16 19 C -0.14 0.29 8.43 71.98 0.61 0.89 16 20 C -0.15 0.43 7.48 71.98 0.54 0.97 16 21 C -0.15 0.05 7.09 31.12 0.22 0.27 16 22 C -0.05 -0.23 9.80 21.72 0.21 -0.02 16 23 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 24 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 25 H 0.08 -0.03 6.42 -2.39 -0.02 -0.04 16 26 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 27 H 0.40 -4.29 8.66 -74.06 -0.64 -4.93 16 28 H -0.27 -0.47 7.11 99.48 0.71 0.23 16 29 H -0.25 0.50 7.09 99.48 0.71 1.20 16 30 H 0.41 -1.33 7.82 -92.71 -0.72 -2.06 16 31 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.11 -0.52 6.09 -2.39 -0.01 -0.54 16 33 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 -0.26 7.57 -2.38 -0.02 -0.28 16 36 H 0.05 -0.05 8.10 -2.39 -0.02 -0.07 16 37 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.06 -0.24 6.05 -2.39 -0.01 -0.26 16 40 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.06 -0.12 6.46 -2.39 -0.02 -0.14 16 42 H 0.10 -0.08 5.69 -2.39 -0.01 -0.09 16 43 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.15 0.78 8.06 -2.91 -0.02 0.75 16 Total: 0.00 -13.88 356.98 1.00 -12.88 By element: Atomic # 1 Polarization: -7.85 SS G_CDS: -0.32 Total: -8.17 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.17 Total: 10.22 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -2.34 Total: -3.43 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -1.54 Total: -8.56 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.15 Total: -1.40 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.12 Total: -1.54 kcal Total: -13.88 1.00 -12.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664192_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.309 kcal (2) G-P(sol) polarization free energy of solvation -13.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds