Wall clock time and date at job start Sun Mar 7 2021 10:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38246 * 119.93985 * 244.99781 * 4 2 1 6 6 C 1.38171 * 120.05565 * 180.02562 * 5 4 2 7 7 C 1.38711 * 119.94287 * 359.97438 * 6 5 4 8 8 O 1.35891 * 120.05941 * 180.02562 * 7 6 5 9 9 C 1.42908 * 116.99781 * 359.97438 * 8 7 6 10 10 C 1.50699 * 109.47146 * 180.02562 * 9 8 7 11 11 O 1.21276 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99983 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99948 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46889 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.85394 * 316.19566 * 14 13 12 16 16 C 1.53786 * 113.61546 * 87.50067 * 14 13 12 17 17 C 1.53788 * 87.07974 * 89.11701 * 16 14 13 18 18 O 1.42903 * 113.68602 * 270.87235 * 17 16 14 19 19 C 1.53001 * 113.61236 * 139.98223 * 17 16 14 20 20 F 1.39892 * 109.47326 * 322.50058 * 19 17 16 21 21 F 1.39894 * 109.46911 * 82.50349 * 19 17 16 22 22 F 1.39899 * 109.46645 * 202.50173 * 19 17 16 23 23 C 1.53779 * 113.61605 * 184.99891 * 14 13 12 24 24 C 1.38759 * 119.88574 * 0.02562 * 7 6 5 25 25 N 1.48003 * 120.02452 * 179.97438 * 24 7 6 26 26 O 1.21796 * 120.00043 * 180.02562 * 25 24 7 27 27 O 1.21803 * 120.00472 * 0.02562 * 25 24 7 28 28 C 1.38121 * 119.94744 * 359.72772 * 24 7 6 29 29 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 30 30 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 31 31 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 32 32 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 33 33 H 1.08002 * 119.97645 * 0.02562 * 5 4 2 34 34 H 1.07989 * 120.02539 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47020 * 300.00018 * 9 8 7 36 36 H 1.09001 * 109.46692 * 59.99856 * 9 8 7 37 37 H 0.96998 * 119.99936 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46769 * 299.99969 * 13 12 10 39 39 H 1.08993 * 109.46992 * 59.99937 * 13 12 10 40 40 H 1.08998 * 113.61408 * 203.66282 * 16 14 13 41 41 H 1.08996 * 113.61574 * 334.57013 * 16 14 13 42 42 H 0.96698 * 113.99777 * 277.53497 * 18 17 16 43 43 H 1.09002 * 113.61123 * 25.42959 * 23 14 13 44 44 H 1.08997 * 113.61715 * 156.25186 * 23 14 13 45 45 H 1.07999 * 119.97302 * 180.29068 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 2.6387 -0.0113 2.1905 6 6 3.1008 -0.6605 3.3192 7 6 2.8540 -2.0149 3.4888 8 8 3.3070 -2.6556 4.5982 9 6 4.0311 -1.8726 5.5494 10 6 4.4509 -2.7460 6.7035 11 8 4.1592 -3.9231 6.7106 12 7 5.1506 -2.2189 7.7278 13 6 5.5592 -3.0681 8.8495 14 6 6.3332 -2.2294 9.8685 15 1 7.0568 -1.5599 9.4034 16 6 5.4346 -1.5410 10.9095 17 6 5.5835 -2.8118 11.7627 18 8 4.5924 -3.8049 11.4912 19 6 5.7491 -2.5306 13.2574 20 9 6.5352 -1.3868 13.4325 21 9 4.4917 -2.3251 13.8353 22 9 6.3716 -3.6227 13.8712 23 6 6.9140 -3.0529 11.0301 24 6 2.1438 -2.7144 2.5236 25 7 1.8792 -4.1597 2.7011 26 8 1.2561 -4.7734 1.8534 27 8 2.2845 -4.7356 3.6949 28 6 1.6796 -2.0597 1.3994 29 1 -0.3934 0.4418 -0.7650 30 1 1.7923 -0.5137 -0.8901 31 1 1.5616 2.4678 1.2086 32 1 3.5346 1.7703 -0.0322 33 1 2.8303 1.0434 2.0582 34 1 3.6530 -0.1137 4.0691 35 1 4.9159 -1.4498 5.0736 36 1 3.3953 -1.0666 5.9157 37 1 5.3836 -1.2773 7.7223 38 1 4.6748 -3.4920 9.3252 39 1 6.1956 -3.8732 8.4826 40 1 5.8864 -0.6573 11.3600 41 1 4.4169 -1.3662 10.5605 42 1 3.7534 -3.6586 11.9491 43 1 7.0905 -4.0987 10.7784 44 1 7.7710 -2.5832 11.5127 45 1 1.1227 -2.6027 0.6502 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664666_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:17:18 Heat of formation + Delta-G solvation = -235.396638 kcal Electronic energy + Delta-G solvation = -38566.216958 eV Core-core repulsion = 32527.074217 eV Total energy + Delta-G solvation = -6039.142741 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.116 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -51.25975 -48.80301 -48.74512 -43.37418 -41.88664 -41.33635 -40.47728 -39.35687 -37.64594 -37.40293 -36.65849 -35.26611 -33.63918 -32.46042 -30.99692 -29.30147 -27.90569 -27.13860 -26.99831 -26.32402 -24.19644 -23.42907 -22.79618 -21.81742 -20.64276 -20.52109 -20.05933 -19.85511 -19.54438 -19.43412 -19.23720 -18.73846 -18.51871 -18.30615 -17.69604 -17.51670 -17.20111 -16.88770 -16.50792 -16.27849 -16.13703 -15.97957 -15.63381 -15.48023 -15.46823 -15.24376 -15.18716 -14.98253 -14.91893 -14.80185 -14.50373 -14.48682 -14.33230 -14.09730 -13.87353 -13.80912 -13.48194 -13.04265 -13.01325 -12.76034 -12.70983 -12.47430 -12.41860 -12.32283 -12.19066 -12.13395 -11.98077 -11.60992 -11.24073 -11.02462 -10.97857 -10.39711 -10.20207 -9.87599 -4.88852 -1.40825 -0.36220 0.05112 0.25552 1.12440 1.27876 1.41528 1.52240 1.69117 1.89889 1.91829 2.22878 2.46486 2.58579 2.68158 2.90889 2.97776 3.07961 3.25382 3.33076 3.39858 3.49398 3.50912 3.53505 3.62880 3.77785 3.83044 3.92163 3.93044 4.13389 4.23808 4.35893 4.39829 4.46660 4.49581 4.52508 4.69598 4.72425 4.77129 4.85711 4.88023 4.95555 5.10356 5.11045 5.32305 5.64216 6.26507 6.37596 6.40919 6.86320 7.11931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.088 4.088 3 Si 0.779 3.221 4 C -0.118 4.118 5 C -0.026 4.026 6 C -0.189 4.189 7 C 0.194 3.806 8 O -0.288 6.288 9 C 0.024 3.976 10 C 0.507 3.493 11 O -0.565 6.565 12 N -0.703 5.703 13 C 0.132 3.868 14 C -0.097 4.097 15 H 0.130 0.870 16 C -0.143 4.143 17 C 0.055 3.945 18 O -0.523 6.523 19 C 0.429 3.571 20 F -0.175 7.175 21 F -0.189 7.189 22 F -0.189 7.189 23 C -0.114 4.114 24 C -0.101 4.101 25 N 0.034 4.966 26 O -0.190 6.190 27 O -0.173 6.173 28 C 0.002 3.998 29 H 0.407 0.593 30 H 0.097 0.903 31 H -0.279 1.279 32 H -0.273 1.273 33 H 0.163 0.837 34 H 0.204 0.796 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.423 0.577 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.400 0.600 43 H 0.088 0.912 44 H 0.128 0.872 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 16.264 -3.924 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.196 4.196 3 Si 0.681 3.319 4 C -0.119 4.119 5 C -0.044 4.044 6 C -0.208 4.208 7 C 0.144 3.856 8 O -0.198 6.198 9 C -0.053 4.053 10 C 0.293 3.707 11 O -0.443 6.443 12 N -0.359 5.359 13 C 0.009 3.991 14 C -0.115 4.115 15 H 0.147 0.853 16 C -0.180 4.180 17 C 0.012 3.988 18 O -0.332 6.332 19 C 0.375 3.625 20 F -0.156 7.156 21 F -0.170 7.170 22 F -0.171 7.171 23 C -0.152 4.152 24 C -0.186 4.186 25 N 0.546 4.454 26 O -0.400 6.400 27 O -0.386 6.386 28 C -0.017 4.017 29 H 0.259 0.741 30 H 0.115 0.885 31 H -0.205 1.205 32 H -0.199 1.199 33 H 0.180 0.820 34 H 0.220 0.780 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.261 0.739 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.252 0.748 43 H 0.107 0.893 44 H 0.146 0.854 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.030 15.883 -3.278 16.980 hybrid contribution -0.635 -1.085 1.248 1.771 sum 4.396 14.798 -2.031 15.570 Atomic orbital electron populations 1.86449 1.17097 1.82698 1.51583 1.25023 0.86220 1.12391 0.95996 0.93427 0.78067 0.74367 0.86034 1.19677 1.01585 0.92025 0.98604 1.21524 0.91245 1.00657 0.90971 1.21686 1.06494 0.90416 1.02158 1.18859 0.89834 0.91781 0.85091 1.86476 1.67402 1.37750 1.28171 1.23135 1.00022 0.93872 0.88304 1.20411 0.78395 0.87979 0.83958 1.90862 1.55346 1.18857 1.79216 1.45550 1.55898 1.14515 1.19920 1.21233 0.99452 0.92776 0.85640 1.22266 0.98110 0.97646 0.93522 0.85252 1.23823 1.03255 0.95515 0.95413 1.23882 0.95460 0.94378 0.85090 1.86646 1.26314 1.48646 1.71591 1.21645 0.73715 0.74152 0.93009 1.93175 1.74959 1.51216 1.96285 1.93172 1.41805 1.94837 1.87222 1.93200 1.83040 1.55073 1.85748 1.23252 0.93336 1.03514 0.95111 1.20874 1.15306 0.80166 1.02276 1.43798 0.98062 1.03976 0.99610 1.94493 1.39736 1.67656 1.38101 1.94690 1.53894 1.70635 1.19425 1.20906 0.92662 0.94754 0.93382 0.74098 0.88511 1.20524 1.19919 0.82012 0.77962 0.83915 0.84103 0.73860 0.91099 0.92346 0.85894 0.88378 0.74756 0.89330 0.85436 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.53 12.81 -148.98 -1.91 0.62 16 2 C -0.09 0.56 2.79 71.23 0.20 0.75 16 3 Si 0.78 -7.91 29.85 68.60 2.05 -5.86 16 4 C -0.12 0.13 5.39 -19.85 -0.11 0.02 16 5 C -0.03 0.13 8.66 22.26 0.19 0.32 16 6 C -0.19 1.12 9.04 22.37 0.20 1.32 16 7 C 0.19 0.69 6.67 22.51 0.15 0.84 16 8 O -0.29 -1.83 7.68 -63.30 -0.49 -2.32 16 9 C 0.02 -0.14 5.22 71.24 0.37 0.23 16 10 C 0.51 0.83 7.91 87.66 0.69 1.52 16 11 O -0.57 -9.02 16.50 16.02 0.26 -8.75 16 12 N -0.70 4.79 5.56 -463.08 -2.57 2.22 16 13 C 0.13 -0.42 5.26 86.38 0.45 0.03 16 14 C -0.10 0.95 3.94 -10.27 -0.04 0.91 16 15 H 0.13 -1.94 8.14 -2.39 -0.02 -1.96 16 16 C -0.14 1.38 6.91 31.12 0.21 1.60 16 17 C 0.06 -0.24 1.36 -10.26 -0.01 -0.25 16 18 O -0.52 0.75 11.45 -148.98 -1.71 -0.95 16 19 C 0.43 -0.25 2.85 71.98 0.21 -0.04 16 20 F -0.17 0.19 15.76 44.97 0.71 0.90 16 21 F -0.19 -0.19 16.65 44.97 0.75 0.56 16 22 F -0.19 -0.74 17.18 44.97 0.77 0.03 16 23 C -0.11 0.73 6.86 31.12 0.21 0.94 16 24 C -0.10 -0.94 6.87 36.48 0.25 -0.69 16 25 N 0.03 0.60 4.45 -46.24 -0.21 0.39 16 26 O -0.19 -3.55 18.45 18.89 0.35 -3.20 16 27 O -0.17 -3.92 17.24 25.60 0.44 -3.48 16 28 C 0.00 0.01 9.18 22.25 0.20 0.21 16 29 H 0.41 -5.96 8.74 -74.05 -0.65 -6.61 16 30 H 0.10 -0.92 7.96 -2.38 -0.02 -0.94 16 31 H -0.28 1.36 7.05 99.48 0.70 2.06 16 32 H -0.27 1.73 7.11 99.48 0.71 2.44 16 33 H 0.16 -1.50 4.86 -2.91 -0.01 -1.51 16 34 H 0.20 -3.27 6.30 -2.92 -0.02 -3.29 16 35 H 0.14 -2.08 7.66 -2.39 -0.02 -2.10 16 36 H 0.14 -2.00 7.66 -2.39 -0.02 -2.02 16 37 H 0.42 -6.77 8.47 -92.71 -0.79 -7.55 16 38 H 0.07 0.14 6.12 -2.39 -0.01 0.12 16 39 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.12 -1.46 7.13 -2.39 -0.02 -1.48 16 41 H 0.10 -1.00 8.10 -2.39 -0.02 -1.02 16 42 H 0.40 -2.62 8.42 -74.06 -0.62 -3.24 16 43 H 0.09 -0.32 8.10 -2.39 -0.02 -0.34 16 44 H 0.13 -1.18 7.89 -2.39 -0.02 -1.19 16 45 H 0.16 0.66 7.61 -2.91 -0.02 0.64 16 Total: 0.00 -40.81 397.94 0.76 -40.06 By element: Atomic # 1 Polarization: -27.07 SS G_CDS: -0.89 Total: -27.95 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 3.19 Total: 7.73 kcal Atomic # 7 Polarization: 5.39 SS G_CDS: -2.78 Total: 2.61 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -3.05 Total: -18.08 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 2.23 Total: 1.50 kcal Atomic # 14 Polarization: -7.91 SS G_CDS: 2.05 Total: -5.86 kcal Total: -40.81 0.76 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664666_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.339 kcal (2) G-P(sol) polarization free energy of solvation -40.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds