Wall clock time and date at job start Sun Mar 7 2021 10:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35658 * 117.00391 * 2 1 4 4 C 1.38408 * 120.11724 * 0.02562 * 3 2 1 5 5 C 1.38721 * 120.02721 * 179.70318 * 4 3 2 6 6 O 1.35721 * 119.85894 * 180.27351 * 5 4 3 7 7 C 1.42900 * 117.00338 * 0.27518 * 6 5 4 8 8 C 1.39143 * 120.27767 * 0.55082 * 5 4 3 9 9 C 1.50697 * 119.87908 * 179.72295 * 8 5 4 10 10 O 1.42905 * 109.46996 * 284.72424 * 9 8 5 11 11 Si 1.86299 * 109.47065 * 164.72805 * 9 8 5 12 12 C 1.37579 * 120.23771 * 359.44871 * 8 5 4 13 13 C 1.39817 * 119.96648 * 0.27362 * 12 8 5 14 14 C 1.47303 * 120.13696 * 179.97438 * 13 12 8 15 15 O 1.21625 * 119.99937 * 180.02562 * 14 13 12 16 16 N 1.34771 * 120.00157 * 359.97438 * 14 13 12 17 17 C 1.46501 * 120.00179 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46860 * 179.97438 * 17 16 14 19 19 F 1.39897 * 109.47428 * 304.99383 * 18 17 16 20 20 C 1.52996 * 109.47183 * 64.99972 * 18 17 16 21 21 C 1.53008 * 109.46847 * 179.97438 * 20 18 17 22 22 C 1.52993 * 109.47026 * 299.99460 * 21 20 18 23 23 H 1.09000 * 109.47890 * 300.00463 * 22 21 20 24 24 C 1.53008 * 109.47026 * 180.02562 * 22 21 20 25 25 O 1.42895 * 109.47030 * 65.00425 * 24 22 21 26 26 C 1.53004 * 109.47080 * 60.00445 * 22 21 20 27 27 C 1.52998 * 109.46883 * 299.99617 * 26 22 21 28 28 H 1.08996 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47128 * 300.00438 * 1 2 3 30 30 H 1.09007 * 109.46812 * 60.00199 * 1 2 3 31 31 H 1.08003 * 119.98011 * 359.97438 * 4 3 2 32 32 H 1.09003 * 109.46997 * 300.00577 * 7 6 5 33 33 H 1.08997 * 109.46673 * 59.99777 * 7 6 5 34 34 H 1.08996 * 109.47303 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47374 * 44.72581 * 9 8 5 36 36 H 0.96696 * 114.00036 * 60.00342 * 10 9 8 37 37 H 1.48504 * 109.99999 * 300.00000 * 11 9 8 38 38 H 1.48504 * 110.00212 * 61.31719 * 11 9 8 39 39 H 1.07999 * 120.01867 * 180.29524 * 12 8 5 40 40 H 0.97001 * 119.99829 * 0.02562 * 16 14 13 41 41 H 1.08999 * 109.46668 * 299.99962 * 17 16 14 42 42 H 1.08995 * 109.47284 * 59.99750 * 17 16 14 43 43 H 1.08997 * 109.47284 * 299.99467 * 20 18 17 44 44 H 1.08998 * 109.47414 * 59.99720 * 20 18 17 45 45 H 1.09009 * 109.46695 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47164 * 60.00367 * 21 20 18 47 47 H 1.08996 * 109.46964 * 185.00595 * 24 22 21 48 48 H 1.08999 * 109.47071 * 305.00438 * 24 22 21 49 49 H 0.96701 * 114.00848 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.47297 * 179.97438 * 26 22 21 51 51 H 1.09000 * 109.46745 * 59.99317 * 26 22 21 52 52 H 1.08998 * 109.47111 * 299.99967 * 27 26 22 53 53 H 1.09001 * 109.46778 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2936 2.3711 0.0005 5 6 1.9254 3.6060 0.0068 6 8 1.1853 4.7437 0.0129 7 6 -0.2358 4.5932 0.0186 8 6 3.3147 3.6834 0.0009 9 6 3.9916 5.0297 0.0014 10 8 3.8940 5.6124 -1.2997 11 14 5.7864 4.8222 0.4558 12 6 4.0725 2.5351 0.0004 13 6 3.4462 1.2850 -0.0001 14 6 4.2540 0.0532 -0.0012 15 8 3.7066 -1.0329 -0.0021 16 7 5.5995 0.1296 -0.0024 17 6 6.4028 -1.0955 -0.0041 18 6 7.8888 -0.7309 -0.0057 19 9 8.1601 0.1154 -1.0861 20 6 8.2405 -0.0181 1.3015 21 6 9.7266 0.3459 1.3001 22 6 10.5636 -0.9285 1.1730 23 1 10.3519 -1.5878 2.0147 24 6 12.0498 -0.5645 1.1722 25 8 12.4037 -0.0046 2.4383 26 6 10.2119 -1.6414 -0.1343 27 6 8.7259 -2.0054 -0.1329 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2150 2.3164 0.0005 32 1 -0.5468 4.0461 -0.8714 33 1 -0.5390 4.0416 0.9085 34 1 -0.7053 5.5768 0.0227 35 1 3.5057 5.6805 0.7284 36 1 2.9858 5.7499 -1.6020 37 1 5.9016 4.2169 1.8070 38 1 6.4678 3.9627 -0.5454 39 1 5.1506 2.5992 0.0007 40 1 6.0361 0.9959 -0.0020 41 1 6.1731 -1.6817 0.8856 42 1 6.1716 -1.6804 -0.8943 43 1 7.6439 0.8896 1.3923 44 1 8.0291 -0.6775 2.1433 45 1 9.9771 0.8542 2.2313 46 1 9.9384 1.0053 0.4584 47 1 12.6432 -1.4610 0.9926 48 1 12.2450 0.1640 0.3853 49 1 13.3338 0.2505 2.5095 50 1 10.8086 -2.5491 -0.2251 51 1 10.4237 -0.9820 -0.9760 52 1 8.5141 -2.6646 0.7089 53 1 8.4752 -2.5128 -1.0644 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17664722_12297780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:19:02 Heat of formation + Delta-G solvation = -219.547605 kcal Electronic energy + Delta-G solvation = -37601.633865 eV Core-core repulsion = 32547.807727 eV Total energy + Delta-G solvation = -5053.826138 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.187 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.92087 -42.25524 -40.77185 -40.05297 -39.56131 -38.47750 -37.39697 -37.06680 -35.96021 -33.02473 -32.35691 -32.02358 -31.71076 -29.07047 -28.70017 -27.91836 -26.16115 -25.31277 -24.48685 -23.92147 -22.87349 -21.88650 -21.63191 -20.77646 -20.20758 -19.02381 -18.66644 -18.26264 -18.00838 -17.49725 -17.33378 -17.27009 -16.92347 -16.68587 -16.59577 -16.39350 -16.17546 -16.10313 -15.84800 -15.74961 -15.53422 -15.45046 -15.02497 -14.65139 -14.40547 -14.32593 -14.26905 -14.05455 -13.98039 -13.74604 -13.62892 -13.41614 -13.24322 -13.05011 -12.75661 -12.70396 -12.61017 -12.60089 -12.27879 -12.27309 -12.14164 -11.80333 -11.60360 -11.45835 -11.32668 -11.20945 -11.14709 -10.95820 -10.83342 -10.40448 -10.07474 -9.34281 -4.87165 -0.46068 -0.08241 1.32069 1.51923 1.62556 1.84718 1.88507 1.95034 2.04451 2.42143 3.08293 3.22047 3.26779 3.32590 3.39446 3.46937 3.51514 3.53366 3.62029 3.87927 3.91475 3.94735 3.96868 4.02995 4.13743 4.18064 4.22079 4.22664 4.22770 4.27839 4.32525 4.34277 4.38041 4.48248 4.50592 4.55825 4.59522 4.61647 4.63355 4.65562 4.77268 4.78629 4.87061 4.88049 4.92835 4.95534 5.05359 5.09585 5.12209 5.19297 5.27688 5.41441 5.88679 6.11429 6.23413 6.62772 6.87846 6.96816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.304 6.304 3 C 0.220 3.780 4 C -0.302 4.302 5 C 0.214 3.786 6 O -0.310 6.310 7 C 0.011 3.989 8 C -0.199 4.199 9 C -0.074 4.074 10 O -0.546 6.546 11 Si 0.788 3.212 12 C -0.015 4.015 13 C -0.231 4.231 14 C 0.564 3.436 15 O -0.555 6.555 16 N -0.724 5.724 17 C 0.102 3.898 18 C 0.114 3.886 19 F -0.214 7.214 20 C -0.139 4.139 21 C -0.109 4.109 22 C -0.088 4.088 23 H 0.078 0.922 24 C 0.078 3.922 25 O -0.594 6.594 26 C -0.110 4.110 27 C -0.133 4.133 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.374 0.626 37 H -0.258 1.258 38 H -0.278 1.278 39 H 0.137 0.863 40 H 0.402 0.598 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.396 0.604 50 H 0.087 0.913 51 H 0.064 0.936 52 H 0.101 0.899 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 3.686 1.577 4.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.170 3.830 4 C -0.321 4.321 5 C 0.166 3.834 6 O -0.221 6.221 7 C -0.083 4.083 8 C -0.200 4.200 9 C -0.182 4.182 10 O -0.352 6.352 11 Si 0.689 3.311 12 C -0.033 4.033 13 C -0.235 4.235 14 C 0.353 3.647 15 O -0.434 6.434 16 N -0.377 5.377 17 C -0.022 4.022 18 C 0.096 3.904 19 F -0.194 7.194 20 C -0.177 4.177 21 C -0.146 4.146 22 C -0.107 4.107 23 H 0.097 0.903 24 C 0.000 4.000 25 O -0.402 6.402 26 C -0.148 4.148 27 C -0.171 4.171 28 H 0.133 0.867 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.190 0.810 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.223 0.777 37 H -0.183 1.183 38 H -0.205 1.205 39 H 0.154 0.846 40 H 0.239 0.761 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.246 0.754 50 H 0.106 0.894 51 H 0.083 0.917 52 H 0.119 0.881 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.809 2.232 1.919 3.052 hybrid contribution -1.326 -0.247 -0.570 1.464 sum -2.135 1.985 1.349 3.212 Atomic orbital electron populations 1.23533 0.76099 1.06027 1.02884 1.86366 1.23576 1.25589 1.85900 1.18893 0.90553 0.85194 0.88331 1.21488 1.02293 0.90438 1.17902 1.18770 0.90208 0.85460 0.88982 1.86052 1.21550 1.27952 1.86596 1.23550 0.75529 1.06423 1.02790 1.19662 0.91197 0.96949 1.12200 1.25233 1.14230 0.89959 0.88768 1.86684 1.33048 1.83201 1.32288 0.92425 0.74348 0.87237 0.77112 1.20817 0.99142 0.90257 0.93132 1.19131 0.91447 0.93374 1.19537 1.18033 0.82087 0.88650 0.75951 1.90810 1.72076 1.29827 1.50708 1.45771 1.05636 1.10301 1.76004 1.22035 0.88780 0.87129 1.04272 1.21301 0.93464 0.90953 0.84713 1.92841 1.94981 1.73494 1.58133 1.22169 0.97885 1.01397 0.96269 1.21464 0.92989 0.97655 1.02512 1.21185 0.93717 0.97055 0.98737 0.90349 1.22250 0.95280 0.97388 0.85072 1.86417 1.33860 1.84354 1.35602 1.21460 0.95188 1.01304 0.96807 1.22066 0.94898 0.95003 1.05171 0.86690 0.90685 0.90804 0.80951 0.91087 0.91217 0.85428 0.89308 0.77702 1.18330 1.20521 0.84605 0.76118 0.88767 0.90744 0.91387 0.88576 0.91131 0.92169 0.92424 0.93300 0.75449 0.89426 0.91679 0.88071 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.98 8.56 -68.77 -0.59 -3.57 16 3 C 0.22 1.89 6.70 22.82 0.15 2.05 16 4 C -0.30 -0.73 8.01 22.43 0.18 -0.55 16 5 C 0.21 0.60 6.63 22.60 0.15 0.75 16 6 O -0.31 0.36 9.38 -90.43 -0.85 -0.49 16 7 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 8 C -0.20 -1.00 5.27 -19.80 -0.10 -1.10 16 9 C -0.07 -0.16 2.33 71.23 0.17 0.01 16 10 O -0.55 -1.86 12.65 -148.98 -1.89 -3.75 16 11 Si 0.79 0.50 30.39 68.60 2.09 2.59 16 12 C -0.02 -0.11 8.14 22.50 0.18 0.08 16 13 C -0.23 -2.41 5.89 -20.00 -0.12 -2.53 16 14 C 0.56 7.38 7.76 86.63 0.67 8.05 16 15 O -0.55 -10.80 15.15 16.85 0.26 -10.54 16 16 N -0.72 -5.51 5.12 -466.50 -2.39 -7.90 16 17 C 0.10 0.46 4.84 86.38 0.42 0.87 16 18 C 0.11 0.18 0.84 -10.79 -0.01 0.17 16 19 F -0.21 -1.34 15.42 44.97 0.69 -0.65 16 20 C -0.14 -0.07 4.87 30.60 0.15 0.08 16 21 C -0.11 -0.14 4.98 30.59 0.15 0.02 16 22 C -0.09 0.06 2.43 -10.79 -0.03 0.03 16 23 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 24 C 0.08 -0.10 6.43 71.98 0.46 0.36 16 25 O -0.59 -0.62 13.19 -148.98 -1.97 -2.58 16 26 C -0.11 0.24 5.08 30.59 0.16 0.40 16 27 C -0.13 0.26 5.00 30.60 0.15 0.41 16 28 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 30 H 0.07 -0.33 7.66 -2.38 -0.02 -0.35 16 31 H 0.17 -0.71 4.50 -2.91 -0.01 -0.72 16 32 H 0.07 -0.69 7.64 -2.39 -0.02 -0.71 16 33 H 0.07 -0.66 7.66 -2.39 -0.02 -0.68 16 34 H 0.13 -1.49 8.14 -2.39 -0.02 -1.51 16 35 H 0.09 -0.04 7.81 -2.39 -0.02 -0.06 16 36 H 0.37 -0.33 8.62 -74.06 -0.64 -0.97 16 37 H -0.26 -0.67 7.11 99.48 0.71 0.03 16 38 H -0.28 -1.54 6.81 99.48 0.68 -0.87 16 39 H 0.14 0.74 3.24 -2.91 -0.01 0.73 16 40 H 0.40 2.15 5.47 -92.71 -0.51 1.64 16 41 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 0.08 7.18 -2.39 -0.02 0.06 16 44 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.07 0.21 7.82 -2.38 -0.02 0.19 16 46 H 0.06 0.17 7.80 -2.39 -0.02 0.16 16 47 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 49 H 0.40 -2.78 9.12 -74.06 -0.68 -3.46 16 50 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 51 H 0.06 -0.02 7.80 -2.39 -0.02 -0.04 16 52 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 53 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -23.32 418.13 -0.52 -23.85 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: -0.84 Total: -8.17 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.96 Total: 11.22 kcal Atomic # 7 Polarization: -5.51 SS G_CDS: -2.39 Total: -7.90 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -5.03 Total: -20.93 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.69 Total: -0.65 kcal Atomic # 14 Polarization: 0.50 SS G_CDS: 2.09 Total: 2.59 kcal Total: -23.32 -0.52 -23.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17664722_12297780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.701 kcal (2) G-P(sol) polarization free energy of solvation -23.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds