Wall clock time and date at job start Sun Mar 7 2021 08:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33816 * 122.44593 * 2 1 4 4 C 1.50707 * 124.52339 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.46907 * 313.67831 * 4 3 2 6 6 Si 1.86295 * 109.47222 * 193.68018 * 4 3 2 7 7 S 1.70616 * 110.95332 * 179.84916 * 3 2 1 8 8 C 1.75832 * 91.56247 * 0.34136 * 7 3 2 9 9 C 1.46583 * 125.45461 * 179.79244 * 8 7 3 10 10 O 1.21700 * 119.99521 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00120 * 0.02562 * 9 8 7 12 12 C 1.47117 * 136.09755 * 0.02562 * 11 9 8 13 13 C 1.53531 * 88.04607 * 206.83947 * 12 11 9 14 14 C 1.46751 * 136.08900 * 179.63367 * 11 9 8 15 15 C 1.52840 * 113.47454 * 38.25561 * 14 11 9 16 16 C 1.53122 * 109.22408 * 172.71812 * 15 14 11 17 17 C 1.52968 * 109.44533 * 58.00510 * 16 15 14 18 18 C 1.53004 * 109.39825 * 178.33588 * 17 16 15 19 19 C 1.52990 * 109.46867 * 180.19692 * 18 17 16 20 20 C 1.53002 * 109.47265 * 300.19947 * 18 17 16 21 21 C 1.52992 * 109.46754 * 60.19826 * 18 17 16 22 22 C 1.52967 * 109.68550 * 298.38223 * 17 16 15 23 23 C 1.52850 * 113.46160 * 267.95897 * 14 11 9 24 24 C 1.36648 * 109.08235 * 359.80429 * 8 7 3 25 25 H 1.08993 * 109.47698 * 275.52714 * 1 2 3 26 26 H 1.09001 * 109.47228 * 35.53131 * 1 2 3 27 27 H 1.09007 * 109.46437 * 155.52687 * 1 2 3 28 28 H 1.08998 * 109.46738 * 73.67381 * 4 3 2 29 29 H 0.96702 * 114.00345 * 300.00057 * 5 4 3 30 30 H 1.48494 * 110.00219 * 180.02562 * 6 4 3 31 31 H 1.48508 * 110.00004 * 301.31845 * 6 4 3 32 32 H 1.09005 * 113.45481 * 321.64032 * 12 11 9 33 33 H 1.09001 * 113.45452 * 92.03987 * 12 11 9 34 34 H 1.08996 * 114.22439 * 87.73938 * 13 12 11 35 35 H 1.09006 * 114.21847 * 220.40780 * 13 12 11 36 36 H 1.08999 * 109.51190 * 292.64273 * 15 14 11 37 37 H 1.09003 * 109.51267 * 52.79075 * 15 14 11 38 38 H 1.08997 * 109.47162 * 298.01147 * 16 15 14 39 39 H 1.09002 * 109.47492 * 177.99964 * 16 15 14 40 40 H 1.09010 * 109.43385 * 58.44939 * 17 16 15 41 41 H 1.09007 * 109.47468 * 60.00583 * 19 18 17 42 42 H 1.09005 * 109.47043 * 180.02562 * 19 18 17 43 43 H 1.08998 * 109.47393 * 300.00226 * 19 18 17 44 44 H 1.08997 * 109.46822 * 59.99951 * 20 18 17 45 45 H 1.08993 * 109.47051 * 179.97438 * 20 18 17 46 46 H 1.09000 * 109.46808 * 299.99687 * 20 18 17 47 47 H 1.09006 * 109.47306 * 59.99801 * 21 18 17 48 48 H 1.09001 * 109.47135 * 179.97438 * 21 18 17 49 49 H 1.09004 * 109.47707 * 299.99862 * 21 18 17 50 50 H 1.08996 * 109.47707 * 301.62837 * 22 17 16 51 51 H 1.09003 * 109.47678 * 181.61048 * 22 17 16 52 52 H 1.09002 * 109.51546 * 307.21563 * 23 14 11 53 53 H 1.09001 * 109.51404 * 67.31182 * 23 14 11 54 54 H 1.08002 * 123.34799 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 -0.0006 5 8 0.5931 2.5903 -0.9754 6 14 2.9631 3.7553 -0.4157 7 16 3.8969 0.7893 0.0042 8 6 3.5937 -0.9426 -0.0045 9 6 4.6232 -1.9860 -0.0099 10 8 4.3003 -3.1594 -0.0163 11 7 5.9274 -1.6459 -0.0079 12 6 6.6957 -0.3914 -0.0006 13 6 7.8360 -1.1470 -0.6977 14 6 7.2073 -2.3640 -0.0050 15 6 7.2011 -3.6227 -0.8720 16 6 8.6209 -4.1913 -0.9456 17 6 9.1219 -4.4945 0.4676 18 6 10.5244 -5.1010 0.3903 19 6 11.0251 -5.4095 1.8027 20 6 10.4769 -6.3932 -0.4275 21 6 11.4736 -4.1069 -0.2815 22 6 9.1703 -3.2026 1.2853 23 6 7.7599 -2.6171 1.3974 24 6 2.2446 -1.1600 -0.0057 25 1 -0.3634 0.0990 1.0228 26 1 -0.3634 0.8363 -0.5972 27 1 -0.3632 -0.9354 -0.4258 28 1 1.2270 2.7377 0.9855 29 1 0.8850 2.4040 -1.8782 30 1 2.3946 5.1271 -0.4189 31 1 4.0679 3.6662 0.5726 32 1 6.2537 0.3917 -0.6167 33 1 6.9526 -0.0458 1.0007 34 1 7.7643 -1.1606 -1.7852 35 1 8.8310 -0.8891 -0.3346 36 1 6.5342 -4.3644 -0.4323 37 1 6.8568 -3.3720 -1.8754 38 1 9.2803 -3.4621 -1.4163 39 1 8.6149 -5.1090 -1.5338 40 1 8.4464 -5.2026 0.9477 41 1 10.3488 -6.1178 2.2814 42 1 12.0245 -5.8412 1.7477 43 1 11.0589 -4.4889 2.3853 44 1 10.1202 -6.1734 -1.4338 45 1 11.4761 -6.8251 -0.4829 46 1 9.8007 -7.1015 0.0511 47 1 11.5074 -3.1862 0.3011 48 1 12.4729 -4.5388 -0.3362 49 1 11.1169 -3.8870 -1.2878 50 1 9.8239 -2.4839 0.7911 51 1 9.5546 -3.4178 2.2824 52 1 7.7985 -1.6775 1.9486 53 1 7.1134 -3.3206 1.9220 54 1 1.8020 -2.1451 -0.0110 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17760998_6739946.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:01:24 Heat of formation + Delta-G solvation = -8.242731 kcal Electronic energy + Delta-G solvation = -32073.245603 eV Core-core repulsion = 28103.933752 eV Total energy + Delta-G solvation = -3969.311851 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.186 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.37459 -40.40728 -39.77737 -38.82998 -37.32596 -35.19991 -32.48514 -32.13292 -30.72288 -30.14266 -29.14194 -28.16110 -28.09049 -26.46496 -24.61735 -24.54797 -23.51312 -22.86243 -21.61222 -20.16332 -19.82935 -19.20460 -18.35968 -17.85584 -17.29680 -17.06140 -16.89821 -16.43172 -16.19963 -15.74201 -15.61457 -15.31283 -15.01955 -14.92209 -14.71888 -14.67949 -14.60902 -14.42873 -14.10216 -13.96253 -13.67819 -13.52720 -13.42591 -13.25699 -13.13580 -12.95029 -12.74846 -12.70155 -12.64357 -12.55909 -12.47206 -12.43097 -12.22840 -12.08667 -12.01795 -11.68693 -11.65612 -11.33456 -11.23408 -10.98726 -10.87086 -10.78933 -10.59038 -9.97852 -9.63857 -9.46296 -5.10802 -0.70039 0.25262 0.68278 1.11989 1.25377 1.54924 1.61088 1.88660 2.04406 3.18764 3.35939 3.42274 3.62678 3.64593 3.66532 3.75715 3.93623 3.96767 4.02695 4.07881 4.19821 4.27156 4.28534 4.33314 4.36396 4.40073 4.46752 4.49509 4.53443 4.54569 4.57478 4.64808 4.77054 4.79743 4.81778 4.87088 4.88674 4.92261 4.94935 4.96580 4.98054 5.01961 5.12478 5.15393 5.17390 5.18435 5.21193 5.25210 5.28596 5.35984 5.37995 5.42708 5.43764 5.49669 5.62502 5.69387 6.56385 6.64513 6.93181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.247 4.247 4 C -0.032 4.032 5 O -0.540 6.540 6 Si 0.724 3.276 7 S 0.258 5.742 8 C -0.277 4.277 9 C 0.608 3.392 10 O -0.577 6.577 11 N -0.643 5.643 12 C 0.082 3.918 13 C -0.126 4.126 14 C 0.159 3.841 15 C -0.110 4.110 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.060 4.060 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.064 4.064 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.397 0.603 30 H -0.268 1.268 31 H -0.249 1.249 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.085 0.915 53 H 0.040 0.960 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 6.143 -2.402 9.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.366 4.366 4 C -0.144 4.144 5 O -0.348 6.348 6 Si 0.626 3.374 7 S 0.528 5.472 8 C -0.397 4.397 9 C 0.399 3.601 10 O -0.459 6.459 11 N -0.376 5.376 12 C -0.040 4.040 13 C -0.163 4.163 14 C 0.075 3.925 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.093 4.093 18 C -0.060 4.060 19 C -0.202 4.202 20 C -0.204 4.204 21 C -0.201 4.201 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.098 4.098 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.247 0.753 30 H -0.193 1.193 31 H -0.174 1.174 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.110 0.890 51 H 0.092 0.908 52 H 0.104 0.896 53 H 0.059 0.941 54 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.318 7.245 -1.617 10.424 hybrid contribution -2.461 -2.012 0.729 3.261 sum 4.857 5.233 -0.888 7.195 Atomic orbital electron populations 1.20748 0.88450 1.04220 1.02958 1.18738 0.98740 0.90447 1.03058 1.24845 0.99777 1.01111 1.10890 1.24648 0.98532 0.95151 0.96075 1.86444 1.35119 1.92603 1.20675 0.94103 0.76732 0.77499 0.89078 1.82675 1.01567 0.95648 1.67339 1.24576 0.97360 0.98716 1.19055 1.16754 0.80758 0.86823 0.75745 1.90808 1.81565 1.20298 1.53243 1.49881 1.02994 1.12985 1.71709 1.23485 0.89863 0.87788 1.02832 1.23532 0.99188 0.92326 1.01266 1.22112 0.79646 0.94486 0.96245 1.21586 0.98173 0.96294 0.98749 1.21631 0.94271 1.01314 0.97027 1.21129 0.95547 0.96911 0.95715 1.20493 0.94612 0.95389 0.95542 1.21950 1.00646 1.01690 0.95953 1.21962 1.01458 0.96869 1.00114 1.21976 0.98299 0.98927 1.00889 1.21665 0.94908 0.96756 1.00991 1.21683 0.97376 1.01773 0.94145 1.20777 0.91390 1.00200 0.97474 0.91682 0.88318 0.91619 0.86357 0.75292 1.19306 1.17421 0.88831 0.87308 0.87718 0.85810 0.94455 0.92395 0.89359 0.91875 0.93531 0.93734 0.92725 0.91555 0.92134 0.92637 0.93778 0.91289 0.93092 0.91851 0.88968 0.90779 0.89646 0.94136 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.17 9.75 71.24 0.69 0.52 16 2 C -0.10 -0.34 5.75 -21.05 -0.12 -0.46 16 3 C -0.25 -0.05 5.61 24.68 0.14 0.08 16 4 C -0.03 0.08 2.68 71.24 0.19 0.27 16 5 O -0.54 1.42 10.27 -148.98 -1.53 -0.11 16 6 Si 0.72 -3.50 30.97 68.60 2.12 -1.38 16 7 S 0.26 -0.26 17.08 -56.49 -0.97 -1.23 16 8 C -0.28 -1.87 6.45 24.08 0.16 -1.72 16 9 C 0.61 6.62 7.94 86.42 0.69 7.30 16 10 O -0.58 -11.30 16.66 -4.35 -0.07 -11.37 16 11 N -0.64 -2.22 3.37 -818.95 -2.76 -4.98 16 12 C 0.08 -0.45 6.86 82.86 0.57 0.12 16 13 C -0.13 0.93 7.17 30.94 0.22 1.16 16 14 C 0.16 -0.01 0.98 0.04 0.00 -0.01 16 15 C -0.11 -0.40 4.84 30.58 0.15 -0.25 16 16 C -0.10 0.14 4.41 30.62 0.14 0.27 16 17 C -0.07 0.10 1.50 -10.81 -0.02 0.08 16 18 C -0.06 0.15 0.57 -52.19 -0.03 0.12 16 19 C -0.15 0.27 8.12 71.98 0.58 0.85 16 20 C -0.15 0.09 8.12 71.98 0.58 0.67 16 21 C -0.14 0.70 7.77 71.98 0.56 1.26 16 22 C -0.11 0.46 4.40 30.62 0.13 0.59 16 23 C -0.11 0.12 5.26 30.58 0.16 0.28 16 24 C -0.06 -0.47 9.78 21.71 0.21 -0.26 16 25 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 26 H 0.10 0.06 5.54 -2.39 -0.01 0.04 16 27 H 0.06 0.08 8.10 -2.38 -0.02 0.06 16 28 H 0.12 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.40 -3.91 8.70 -74.06 -0.64 -4.56 16 30 H -0.27 -0.41 7.11 99.48 0.71 0.30 16 31 H -0.25 0.57 7.11 99.48 0.71 1.28 16 32 H 0.09 -0.73 6.39 -2.38 -0.02 -0.75 16 33 H 0.11 -0.93 7.28 -2.39 -0.02 -0.94 16 34 H 0.10 -0.82 8.12 -2.39 -0.02 -0.84 16 35 H 0.12 -1.55 7.36 -2.38 -0.02 -1.57 16 36 H 0.04 0.42 7.65 -2.39 -0.02 0.41 16 37 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 38 H 0.09 -0.44 6.32 -2.39 -0.02 -0.45 16 39 H 0.06 0.02 6.33 -2.39 -0.02 0.00 16 40 H 0.05 0.16 8.14 -2.38 -0.02 0.15 16 41 H 0.04 0.01 8.14 -2.38 -0.02 -0.01 16 42 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.07 -0.22 6.39 -2.39 -0.02 -0.24 16 44 H 0.06 -0.06 6.38 -2.39 -0.02 -0.07 16 45 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.07 -0.47 6.46 -2.38 -0.02 -0.48 16 48 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.06 -0.35 6.47 -2.38 -0.02 -0.36 16 50 H 0.09 -0.75 5.73 -2.39 -0.01 -0.77 16 51 H 0.07 -0.31 6.34 -2.39 -0.02 -0.33 16 52 H 0.09 -0.36 7.01 -2.39 -0.02 -0.38 16 53 H 0.04 0.21 8.14 -2.39 -0.02 0.19 16 54 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 Total: 0.00 -18.54 406.37 2.10 -16.44 By element: Atomic # 1 Polarization: -8.55 SS G_CDS: 0.30 Total: -8.26 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.01 Total: 10.88 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -2.76 Total: -4.98 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.60 Total: -11.48 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.12 Total: -1.38 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -0.97 Total: -1.23 kcal Total: -18.54 2.10 -16.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17760998_6739946.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.196 kcal (2) G-P(sol) polarization free energy of solvation -18.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds