Wall clock time and date at job start Sun Mar 7 2021 08:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46715 * 163.54657 * 3 2 1 5 5 C 1.53002 * 109.46929 * 283.54246 * 3 2 1 6 6 C 1.53002 * 109.47136 * 60.00379 * 5 3 2 7 7 C 1.53000 * 109.47000 * 59.99854 * 6 5 3 8 8 H 1.08996 * 109.46933 * 59.99983 * 7 6 5 9 9 N 1.46500 * 109.46858 * 179.97438 * 7 6 5 10 10 C 1.34770 * 120.00235 * 274.99850 * 9 7 6 11 11 O 1.21290 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00142 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47457 * 180.02562 * 12 10 9 14 14 O 1.42894 * 109.47177 * 180.02562 * 13 12 10 15 15 C 1.35899 * 116.99856 * 180.02562 * 14 13 12 16 16 C 1.38729 * 120.05859 * 179.97438 * 15 14 13 17 17 C 1.38150 * 119.95038 * 180.02562 * 16 15 14 18 18 C 1.38265 * 120.04950 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.94136 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47055 * 300.00303 * 19 18 17 21 21 Si 1.86304 * 109.46911 * 180.02562 * 19 18 17 22 22 C 1.38271 * 120.11462 * 0.25426 * 18 17 16 23 23 C 1.38145 * 120.04946 * 359.44874 * 22 18 17 24 24 C 1.53001 * 109.46926 * 300.00107 * 7 6 5 25 25 C 1.52989 * 109.47347 * 60.00242 * 24 7 6 26 26 H 4.18741 * 15.03893 * 359.97438 * 4 2 1 27 27 H 1.08996 * 109.47077 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.47216 * 299.99827 * 5 3 2 29 29 H 1.08999 * 109.46920 * 299.99705 * 6 5 3 30 30 H 1.09001 * 109.46900 * 179.97438 * 6 5 3 31 31 H 0.97003 * 119.99591 * 95.00455 * 9 7 6 32 32 H 1.09001 * 109.46816 * 60.00467 * 12 10 9 33 33 H 1.08997 * 109.47326 * 300.00355 * 12 10 9 34 34 H 1.08998 * 109.46749 * 59.99785 * 13 12 10 35 35 H 1.09004 * 109.46620 * 300.00549 * 13 12 10 36 36 H 1.08007 * 120.02564 * 0.04577 * 16 15 14 37 37 H 1.07997 * 119.97457 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47152 * 60.00111 * 19 18 17 39 39 H 0.96708 * 114.00101 * 299.99358 * 20 19 18 40 40 H 1.48497 * 110.00028 * 58.68223 * 21 19 18 41 41 H 1.48501 * 109.99652 * 179.97438 * 21 19 18 42 42 H 1.07998 * 119.96980 * 179.70625 * 22 18 17 43 43 H 1.08009 * 120.02002 * 180.25264 * 23 22 18 44 44 H 1.08999 * 109.46423 * 180.02562 * 24 7 6 45 45 H 1.09001 * 109.46792 * 299.99517 * 24 7 6 46 46 H 1.09001 * 109.47767 * 59.99872 * 25 24 7 47 47 H 1.08999 * 109.47447 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.9865 -0.2911 5 6 3.1561 -0.3369 1.4024 6 6 2.6468 -1.7206 1.8110 7 6 3.1573 -2.7659 0.8173 8 1 4.2473 -2.7653 0.8173 9 7 2.6701 -4.0908 1.2089 10 6 3.3477 -4.8155 2.1211 11 8 4.3606 -4.3706 2.6182 12 6 2.8462 -6.1782 2.5244 13 6 3.7907 -6.7817 3.5658 14 8 3.3155 -8.0740 3.9477 15 6 4.0452 -8.7511 4.8728 16 6 3.6413 -10.0111 5.2900 17 6 4.3846 -10.6972 6.2309 18 6 5.5299 -10.1289 6.7572 19 6 6.3385 -10.8793 7.7840 20 8 5.5260 -11.1444 8.9292 21 14 7.8074 -9.8512 8.2899 22 6 5.9314 -8.8708 6.3475 23 6 5.1949 -8.1833 5.4023 24 6 2.6472 -2.4282 -0.5851 25 6 3.1565 -1.0447 -0.9937 26 1 -1.0500 -0.0011 -0.0002 27 1 4.2461 -0.3360 1.4026 28 1 2.7925 0.4079 2.1104 29 1 1.5568 -1.7211 1.8110 30 1 3.0106 -1.9612 2.8100 31 1 1.8599 -4.4466 0.8116 32 1 2.8095 -6.8257 1.6483 33 1 1.8472 -6.0862 2.9504 34 1 3.8271 -6.1340 4.4418 35 1 4.7900 -6.8735 3.1401 36 1 2.7467 -10.4554 4.8792 37 1 4.0708 -11.6783 6.5556 38 1 6.6834 -11.8212 7.3573 39 1 5.1835 -10.3498 9.3610 40 1 7.3509 -8.5513 8.8442 41 1 8.6127 -10.5799 9.3027 42 1 6.8238 -8.4271 6.7636 43 1 5.5113 -7.2023 5.0795 44 1 3.0106 -3.1732 -1.2929 45 1 1.5572 -2.4289 -0.5851 46 1 4.2465 -1.0441 -0.9937 47 1 2.7935 -0.8043 -1.9929 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4549602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:04:24 Heat of formation + Delta-G solvation = -34.267948 kcal Electronic energy + Delta-G solvation = -26898.364755 eV Core-core repulsion = 23014.014263 eV Total energy + Delta-G solvation = -3884.350492 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.166 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.47985 -41.07789 -39.66691 -39.12313 -37.30927 -35.78313 -33.63005 -32.94527 -32.05148 -31.84900 -31.49444 -30.14638 -26.64854 -25.67771 -24.07340 -23.74478 -23.21331 -22.20468 -21.68644 -21.27007 -19.54461 -18.49469 -18.31309 -17.62414 -17.56683 -17.46263 -16.98547 -16.38554 -16.32598 -16.20242 -15.99090 -15.61983 -15.39624 -15.29685 -14.83362 -14.72945 -14.47115 -14.31581 -14.18310 -13.90560 -13.68652 -13.48960 -13.23418 -12.94048 -12.85285 -12.83159 -12.30977 -12.28374 -12.21457 -12.06989 -11.80231 -11.76273 -11.61711 -11.51315 -11.12255 -10.94288 -10.80854 -10.61198 -10.10823 -10.04645 -9.22873 -4.93668 0.27030 0.29796 1.31324 1.52351 1.58301 1.70271 1.93626 1.93654 1.96361 2.48182 2.64365 3.42322 3.42843 3.54307 3.66193 3.72316 3.76903 3.82038 3.88528 3.89657 3.98569 4.04433 4.11038 4.20532 4.25211 4.33374 4.42693 4.44185 4.48116 4.51265 4.56800 4.63386 4.67171 4.67661 4.77839 4.85601 4.96880 5.03633 5.05102 5.12395 5.14297 5.15623 5.17249 5.27920 5.29460 5.38013 5.48099 5.48709 5.71315 6.31094 6.46564 6.48252 6.75054 7.15449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.193 4.193 3 C 0.015 3.985 4 H 0.103 0.897 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.148 3.852 8 H 0.076 0.924 9 N -0.714 5.714 10 C 0.520 3.480 11 O -0.580 6.580 12 C -0.133 4.133 13 C 0.074 3.926 14 O -0.322 6.322 15 C 0.123 3.877 16 C -0.159 4.159 17 C -0.059 4.059 18 C -0.159 4.159 19 C -0.074 4.074 20 O -0.548 6.548 21 Si 0.759 3.241 22 C -0.080 4.080 23 C -0.210 4.210 24 C -0.120 4.120 25 C -0.106 4.106 26 H 0.233 0.767 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.416 0.584 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.385 0.615 40 H -0.287 1.287 41 H -0.302 1.302 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 1.642 -5.561 6.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.193 4.193 3 C -0.002 4.002 4 H 0.121 0.879 5 C -0.145 4.145 6 C -0.163 4.163 7 C 0.044 3.956 8 H 0.094 0.906 9 N -0.366 5.366 10 C 0.307 3.693 11 O -0.460 6.460 12 C -0.173 4.173 13 C -0.002 4.002 14 O -0.236 6.236 15 C 0.078 3.922 16 C -0.177 4.177 17 C -0.077 4.077 18 C -0.159 4.159 19 C -0.183 4.183 20 O -0.357 6.357 21 Si 0.665 3.335 22 C -0.097 4.097 23 C -0.228 4.228 24 C -0.158 4.158 25 C -0.144 4.144 26 H 0.250 0.750 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.253 0.747 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.234 0.766 40 H -0.213 1.213 41 H -0.230 1.230 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.781 1.699 -4.846 5.194 hybrid contribution -1.490 0.310 0.788 1.713 sum -2.270 2.009 -4.058 5.065 Atomic orbital electron populations 1.25555 0.96816 1.01057 1.00385 1.23364 0.94902 1.00312 1.00726 1.18493 0.84304 1.01055 0.96397 0.87910 1.21509 1.01493 0.96178 0.95336 1.21851 1.00902 0.94966 0.98573 1.20963 0.99208 0.81132 0.94324 0.90633 1.45977 1.29520 1.18173 1.42890 1.20622 0.83138 0.86942 0.78572 1.90733 1.26728 1.73189 1.55400 1.21441 1.01555 0.92995 1.01293 1.22447 0.98109 0.81420 0.98215 1.85956 1.50675 1.31250 1.55672 1.19191 0.91046 0.92328 0.89680 1.20676 1.02872 0.93203 1.00978 1.20978 0.93153 0.99835 0.93717 1.20263 0.98512 0.95841 1.01325 1.25103 1.00187 1.07090 0.85970 1.86561 1.68707 1.36956 1.43430 0.94154 0.78293 0.74982 0.86063 1.20995 0.98989 0.93691 0.96024 1.21414 0.96979 1.02481 1.01967 1.21763 1.01579 0.97986 0.94490 1.21518 1.01761 0.92656 0.98496 0.75020 0.89967 0.91533 0.91877 0.93221 0.74725 0.85461 0.85874 0.91819 0.91315 0.84051 0.84161 0.85562 0.76566 1.21347 1.23013 0.83918 0.84267 0.90077 0.91130 0.89577 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.03 19.25 74.32 1.43 1.46 16 2 C -0.19 -0.14 10.06 31.13 0.31 0.18 16 3 C 0.02 -0.04 3.07 -12.60 -0.04 -0.08 16 4 H 0.10 -0.42 8.14 -2.38 -0.02 -0.44 16 5 C -0.11 0.16 5.43 30.60 0.17 0.33 16 6 C -0.12 -0.04 5.27 30.59 0.16 0.12 16 7 C 0.15 -0.23 2.45 44.99 0.11 -0.12 16 8 H 0.08 0.16 7.58 -2.39 -0.02 0.14 16 9 N -0.71 2.45 5.08 -442.54 -2.25 0.21 16 10 C 0.52 0.40 7.79 87.66 0.68 1.08 16 11 O -0.58 -5.40 15.64 -3.06 -0.05 -5.44 16 12 C -0.13 0.54 6.07 29.85 0.18 0.72 16 13 C 0.07 0.06 4.03 71.98 0.29 0.35 16 14 O -0.32 -1.10 10.14 -92.41 -0.94 -2.04 16 15 C 0.12 0.53 6.69 22.50 0.15 0.68 16 16 C -0.16 -0.49 9.99 22.37 0.22 -0.27 16 17 C -0.06 -0.13 9.60 22.26 0.21 0.08 16 18 C -0.16 -0.27 5.39 -19.85 -0.11 -0.37 16 19 C -0.07 -0.04 2.82 71.24 0.20 0.16 16 20 O -0.55 -1.90 12.77 -148.98 -1.90 -3.80 16 21 Si 0.76 -0.33 29.78 68.60 2.04 1.72 16 22 C -0.08 -0.11 8.66 22.26 0.19 0.08 16 23 C -0.21 -0.63 9.04 22.37 0.20 -0.43 16 24 C -0.12 0.57 5.17 30.59 0.16 0.73 16 25 C -0.11 0.51 5.43 30.59 0.17 0.68 16 26 H 0.23 -1.31 7.80 -4.42 -0.03 -1.34 16 27 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.06 7.23 -2.39 -0.02 0.05 16 30 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.42 -3.75 8.60 -92.71 -0.80 -4.55 16 32 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.12 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.06 0.15 7.62 -2.39 -0.02 0.13 16 35 H 0.07 0.12 7.62 -2.38 -0.02 0.10 16 36 H 0.14 0.09 8.06 -2.91 -0.02 0.06 16 37 H 0.14 0.04 8.06 -2.91 -0.02 0.01 16 38 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 39 H 0.39 -0.67 8.70 -74.05 -0.64 -1.31 16 40 H -0.29 -1.09 7.10 99.48 0.71 -0.38 16 41 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 42 H 0.14 -0.33 4.87 -2.91 -0.01 -0.34 16 43 H 0.14 0.18 6.30 -2.91 -0.02 0.16 16 44 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.07 -0.29 7.23 -2.39 -0.02 -0.31 16 46 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -18.33 384.73 1.18 -17.14 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: -0.42 Total: -13.17 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.70 Total: 5.39 kcal Atomic # 7 Polarization: 2.45 SS G_CDS: -2.25 Total: 0.21 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -2.89 Total: -11.29 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 2.04 Total: 1.72 kcal Total: -18.33 1.18 -17.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4549602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.123 kcal (2) G-P(sol) polarization free energy of solvation -18.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds