Wall clock time and date at job start Sun Mar 7 2021 08:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46965 * 115.33720 * 3 2 1 5 5 C 1.52997 * 109.46901 * 235.33526 * 3 2 1 6 6 C 1.53006 * 109.47127 * 60.00439 * 5 3 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 3 8 8 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 9 9 N 1.46496 * 109.46941 * 179.97438 * 7 6 5 10 10 C 1.34777 * 120.00037 * 204.99725 * 9 7 6 11 11 O 1.21275 * 119.99888 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99882 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.46898 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46710 * 179.97438 * 13 12 10 15 15 O 1.42902 * 109.46723 * 179.97438 * 14 13 12 16 16 C 1.35900 * 116.99900 * 179.97438 * 15 14 13 17 17 C 1.38711 * 120.05857 * 180.02562 * 16 15 14 18 18 C 1.38166 * 119.94977 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.97294 * 180.02562 * 18 17 16 20 20 O 1.42894 * 109.47443 * 300.00241 * 19 18 17 21 21 Si 1.86299 * 109.46945 * 180.02562 * 19 18 17 22 22 C 1.38244 * 120.05194 * 0.02562 * 18 17 16 23 23 C 1.38288 * 120.11073 * 359.96953 * 22 18 17 24 24 C 1.38124 * 120.05986 * 359.77397 * 23 22 18 25 25 C 1.53002 * 109.46978 * 299.99874 * 7 6 5 26 26 C 1.52996 * 109.46891 * 60.00410 * 25 7 6 27 27 H 4.18736 * 15.03872 * 0.02562 * 4 2 1 28 28 H 1.08998 * 109.47533 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47853 * 300.00280 * 5 3 2 30 30 H 1.09000 * 109.47050 * 179.97438 * 6 5 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 6 5 3 32 32 H 0.97005 * 120.00318 * 25.00578 * 9 7 6 33 33 H 1.08997 * 109.47332 * 300.00091 * 12 10 9 34 34 H 1.09001 * 109.47171 * 60.00055 * 12 10 9 35 35 H 1.08997 * 109.47232 * 300.00187 * 13 12 10 36 36 H 1.09001 * 109.47137 * 60.00069 * 13 12 10 37 37 H 1.08997 * 109.47605 * 300.00178 * 14 13 12 38 38 H 1.09006 * 109.47007 * 60.00760 * 14 13 12 39 39 H 1.08000 * 120.02432 * 0.02787 * 17 16 15 40 40 H 1.09002 * 109.46696 * 60.00904 * 19 18 17 41 41 H 0.96699 * 114.00507 * 300.00165 * 20 19 18 42 42 H 1.48504 * 109.99834 * 58.68163 * 21 19 18 43 43 H 1.48499 * 110.00268 * 180.02562 * 21 19 18 44 44 H 1.07997 * 119.94153 * 179.97438 * 22 18 17 45 45 H 1.08002 * 119.96880 * 180.02562 * 23 22 18 46 46 H 1.07993 * 120.03256 * 180.27491 * 24 23 22 47 47 H 1.09004 * 109.47006 * 180.02562 * 25 7 6 48 48 H 1.08992 * 109.47056 * 300.00064 * 25 7 6 49 49 H 1.09004 * 109.47368 * 179.97438 * 26 25 7 50 50 H 1.09001 * 109.47372 * 59.99964 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.4406 -0.9288 5 6 3.1556 0.8213 1.1864 6 6 2.6459 0.2037 2.4902 7 6 3.1566 -1.2337 2.6075 8 1 4.2467 -1.2332 2.6075 9 7 2.6691 -1.8248 3.8561 10 6 3.3466 -2.8377 4.4318 11 8 4.3600 -3.2596 3.9163 12 6 2.8447 -3.4462 5.7160 13 6 3.7892 -4.5682 6.1520 14 6 3.2800 -5.1854 7.4560 15 8 4.1618 -6.2337 7.8629 16 6 3.8512 -6.8901 9.0117 17 6 4.6639 -7.9183 9.4658 18 6 4.3458 -8.5845 10.6337 19 6 5.2287 -9.7013 11.1279 20 8 5.2837 -10.7360 10.1440 21 14 4.5317 -10.3888 12.7129 22 6 3.2182 -8.2272 11.3493 23 6 2.4063 -7.2024 10.8987 24 6 2.7229 -6.5299 9.7346 25 6 2.6470 -2.0544 1.4210 26 6 3.1567 -1.4368 0.1173 27 1 -1.0499 0.0002 0.0006 28 1 4.2456 0.8215 1.1868 29 1 2.7918 1.8454 1.1030 30 1 3.0093 0.7882 3.3355 31 1 1.5559 0.2032 2.4903 32 1 1.8586 -1.4872 4.2686 33 1 2.8077 -2.6804 6.4907 34 1 1.8457 -3.8530 5.5592 35 1 3.8258 -5.3339 5.3771 36 1 4.7884 -4.1617 6.3086 37 1 3.2437 -4.4195 8.2307 38 1 2.2807 -5.5919 7.2997 39 1 5.5447 -8.1980 8.9069 40 1 6.2329 -9.3177 11.3085 41 1 4.4236 -11.1244 9.9330 42 1 3.1508 -10.8861 12.4869 43 1 5.3936 -11.4907 13.2111 44 1 2.9709 -8.7494 12.2618 45 1 1.5262 -6.9250 11.4598 46 1 2.0911 -5.7267 9.3854 47 1 3.0105 -3.0786 1.5048 48 1 1.5571 -2.0549 1.4211 49 1 2.7940 -2.0217 -0.7280 50 1 4.2467 -1.4363 0.1173 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4549616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:04:31 Heat of formation + Delta-G solvation = -41.419480 kcal Electronic energy + Delta-G solvation = -28424.554482 eV Core-core repulsion = 24384.356257 eV Total energy + Delta-G solvation = -4040.198225 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.182 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.35357 -41.14334 -39.63733 -39.18477 -37.42852 -35.78369 -34.90518 -33.12558 -32.46987 -31.86040 -31.32181 -30.42009 -28.11992 -26.82308 -24.37899 -23.75930 -23.67974 -23.07375 -21.86015 -21.68255 -21.21494 -19.25238 -18.49938 -17.93296 -17.89477 -17.47436 -17.40188 -17.15033 -16.85370 -16.44645 -16.26495 -16.15720 -15.54169 -15.46122 -15.34504 -15.06642 -14.78194 -14.61954 -14.28866 -14.12213 -13.99333 -13.79916 -13.31571 -13.24499 -13.21019 -13.08608 -12.90975 -12.74065 -12.33785 -12.30046 -12.28711 -12.22587 -11.95055 -11.77457 -11.61496 -11.56090 -11.51986 -11.07308 -10.94700 -10.77862 -10.68612 -10.07922 -9.92161 -9.24490 -4.91239 0.21603 0.41227 1.29172 1.61118 1.61804 1.90155 1.93056 1.95644 1.99426 2.38377 2.67953 3.38867 3.41830 3.57839 3.65051 3.71957 3.76420 3.85255 3.87334 3.96002 4.01293 4.09871 4.11372 4.18112 4.21776 4.25534 4.34354 4.39679 4.43666 4.43965 4.47332 4.50989 4.55808 4.60800 4.65443 4.69852 4.84393 4.99326 4.99775 5.02223 5.04542 5.11176 5.13393 5.14415 5.16137 5.28268 5.29185 5.37691 5.39019 5.45457 5.51956 5.75006 6.42957 6.45332 6.53660 6.74502 7.24833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.194 4.194 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.107 4.107 6 C -0.119 4.119 7 C 0.147 3.853 8 H 0.069 0.931 9 N -0.717 5.717 10 C 0.508 3.492 11 O -0.588 6.588 12 C -0.128 4.128 13 C -0.101 4.101 14 C 0.058 3.942 15 O -0.339 6.339 16 C 0.115 3.885 17 C -0.152 4.152 18 C -0.083 4.083 19 C -0.093 4.093 20 O -0.551 6.551 21 Si 0.783 3.217 22 C -0.159 4.159 23 C -0.072 4.072 24 C -0.205 4.205 25 C -0.123 4.123 26 C -0.108 4.108 27 H 0.235 0.765 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.386 0.614 42 H -0.278 1.278 43 H -0.304 1.304 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.153 0.847 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 6.533 3.761 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.194 4.194 3 C -0.002 4.002 4 H 0.121 0.879 5 C -0.145 4.145 6 C -0.156 4.156 7 C 0.042 3.958 8 H 0.088 0.912 9 N -0.369 5.369 10 C 0.296 3.704 11 O -0.468 6.468 12 C -0.167 4.167 13 C -0.139 4.139 14 C -0.016 4.016 15 O -0.254 6.254 16 C 0.070 3.930 17 C -0.171 4.171 18 C -0.083 4.083 19 C -0.201 4.201 20 O -0.359 6.359 21 Si 0.687 3.313 22 C -0.177 4.177 23 C -0.090 4.090 24 C -0.224 4.224 25 C -0.162 4.162 26 C -0.146 4.146 27 H 0.251 0.749 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.253 0.747 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.235 0.765 42 H -0.205 1.205 43 H -0.232 1.232 44 H 0.166 0.834 45 H 0.177 0.823 46 H 0.171 0.829 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.181 5.684 3.672 9.165 hybrid contribution -0.661 -0.613 -1.350 1.623 sum -6.842 5.071 2.322 8.827 Atomic orbital electron populations 1.25561 0.96791 1.00368 1.00889 1.23337 0.94860 1.00755 1.00446 1.18471 0.84425 0.96661 1.00625 0.87938 1.21525 1.01653 0.99080 0.92225 1.21754 1.01606 0.93441 0.98849 1.20927 0.98934 0.92929 0.83010 0.91232 1.46026 1.29568 1.35841 1.25416 1.21188 0.83094 0.79373 0.86729 1.90728 1.27142 1.62578 1.66330 1.21539 1.01344 0.99081 0.94735 1.21144 0.99738 0.97534 0.95509 1.22987 0.93189 0.88550 0.96871 1.86055 1.52411 1.48626 1.38266 1.19212 0.94631 0.92763 0.86388 1.20318 1.01260 0.97142 0.98372 1.20146 0.96352 0.97143 0.94675 1.25444 1.04971 0.88190 1.01456 1.86571 1.36319 1.52993 1.60005 0.93884 0.75748 0.83207 0.78424 1.21187 0.95244 1.00252 1.01017 1.21311 0.99355 0.93570 0.94786 1.21607 0.98139 1.04403 0.98249 1.21833 1.00925 0.98665 0.94738 1.21508 1.01352 0.94548 0.97167 0.74894 0.89812 0.90248 0.90115 0.90953 0.74726 0.85330 0.85695 0.92386 0.92078 0.89650 0.90011 0.86693 0.86146 0.76484 1.20472 1.23244 0.83440 0.82284 0.82921 0.93589 0.91704 0.91523 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.01 19.25 74.32 1.43 1.44 16 2 C -0.19 -0.22 10.06 31.13 0.31 0.10 16 3 C 0.02 -0.03 3.07 -12.60 -0.04 -0.07 16 4 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 5 C -0.11 0.42 5.43 30.60 0.17 0.58 16 6 C -0.12 0.48 5.17 30.60 0.16 0.63 16 7 C 0.15 -0.02 2.45 44.99 0.11 0.09 16 8 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 9 N -0.72 1.89 5.08 -442.54 -2.25 -0.36 16 10 C 0.51 1.08 7.79 87.66 0.68 1.76 16 11 O -0.59 -7.52 15.64 -3.01 -0.05 -7.57 16 12 C -0.13 0.74 5.70 29.85 0.17 0.91 16 13 C -0.10 -0.07 4.87 30.59 0.15 0.08 16 14 C 0.06 -0.11 4.74 71.98 0.34 0.23 16 15 O -0.34 -2.20 10.14 -92.42 -0.94 -3.13 16 16 C 0.12 0.60 6.69 22.51 0.15 0.75 16 17 C -0.15 -1.01 9.55 22.37 0.21 -0.80 16 18 C -0.08 -0.22 5.39 -19.88 -0.11 -0.33 16 19 C -0.09 -0.17 2.82 71.24 0.20 0.03 16 20 O -0.55 -3.06 12.77 -148.98 -1.90 -4.96 16 21 Si 0.78 -1.20 29.78 68.60 2.04 0.85 16 22 C -0.16 0.18 8.67 22.28 0.19 0.38 16 23 C -0.07 0.19 10.04 22.25 0.22 0.41 16 24 C -0.21 0.11 9.04 22.37 0.20 0.32 16 25 C -0.12 -0.21 5.27 30.59 0.16 -0.04 16 26 C -0.11 0.02 5.43 30.59 0.17 0.18 16 27 H 0.23 -1.35 7.80 -4.42 -0.03 -1.39 16 28 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.07 -0.28 7.23 -2.39 -0.02 -0.30 16 32 H 0.42 -3.78 8.60 -92.70 -0.80 -4.58 16 33 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 34 H 0.13 -1.36 8.14 -2.39 -0.02 -1.38 16 35 H 0.06 0.32 8.10 -2.39 -0.02 0.30 16 36 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 37 H 0.09 -0.53 7.65 -2.39 -0.02 -0.54 16 38 H 0.08 -0.46 7.67 -2.38 -0.02 -0.48 16 39 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 41 H 0.39 -0.15 8.70 -74.06 -0.64 -0.79 16 42 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 43 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 44 H 0.15 -0.84 4.87 -2.91 -0.01 -0.85 16 45 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 46 H 0.15 -0.92 6.30 -2.91 -0.02 -0.94 16 47 H 0.05 0.29 8.14 -2.38 -0.02 0.28 16 48 H 0.06 0.12 7.23 -2.39 -0.02 0.10 16 49 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -24.25 406.24 1.33 -22.92 By element: Atomic # 1 Polarization: -13.94 SS G_CDS: -0.46 Total: -14.40 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.89 Total: 6.65 kcal Atomic # 7 Polarization: 1.89 SS G_CDS: -2.25 Total: -0.36 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -2.89 Total: -15.66 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.04 Total: 0.85 kcal Total: -24.25 1.33 -22.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4549616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.502 kcal (2) G-P(sol) polarization free energy of solvation -24.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds