Wall clock time and date at job start Sun Mar 7 2021 08:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47128 * 295.92327 * 3 2 1 5 5 C 1.52998 * 109.47152 * 55.92692 * 3 2 1 6 6 C 1.52996 * 109.47346 * 59.99495 * 5 3 2 7 7 C 1.52999 * 109.46904 * 60.00116 * 6 5 3 8 8 H 1.09005 * 109.47352 * 60.00022 * 7 6 5 9 9 N 1.46506 * 109.47091 * 179.97438 * 7 6 5 10 10 C 1.34773 * 119.99969 * 204.72183 * 9 7 6 11 11 O 1.21617 * 120.00330 * 0.02562 * 10 9 7 12 12 C 1.47386 * 119.99892 * 180.02562 * 10 9 7 13 13 C 1.36414 * 127.18980 * 180.02562 * 12 10 9 14 14 C 1.50702 * 125.80452 * 0.02562 * 13 12 10 15 15 O 1.42898 * 109.47188 * 89.99644 * 14 13 12 16 16 C 1.35905 * 116.99650 * 180.02562 * 15 14 13 17 17 C 1.38733 * 120.05608 * 359.72587 * 16 15 14 18 18 C 1.38141 * 119.94350 * 179.69840 * 17 16 15 19 19 C 1.38268 * 120.05258 * 0.60066 * 18 17 16 20 20 C 1.50706 * 119.94171 * 179.70096 * 19 18 17 21 21 O 1.42901 * 109.46921 * 244.97415 * 20 19 18 22 22 Si 1.86294 * 109.47342 * 4.97504 * 20 19 18 23 23 C 1.38267 * 120.11264 * 359.67462 * 19 18 17 24 24 C 1.38139 * 120.05368 * 0.02562 * 23 19 18 25 25 O 1.33655 * 108.39480 * 179.97438 * 13 12 10 26 26 C 1.34212 * 110.90741 * 0.02562 * 25 13 12 27 27 C 1.34175 * 109.12600 * 359.70590 * 26 25 13 28 28 C 1.52995 * 109.47197 * 299.99753 * 7 6 5 29 29 C 1.52996 * 109.46992 * 60.00301 * 28 7 6 30 30 H 4.18741 * 15.03939 * 359.97438 * 4 2 1 31 31 H 1.09010 * 109.46944 * 299.99504 * 5 3 2 32 32 H 1.08997 * 109.47198 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47248 * 300.00307 * 6 5 3 34 34 H 1.09005 * 109.46905 * 179.97438 * 6 5 3 35 35 H 0.97005 * 119.99811 * 25.00235 * 9 7 6 36 36 H 1.09003 * 109.46719 * 209.99780 * 14 13 12 37 37 H 1.08999 * 109.46427 * 329.99495 * 14 13 12 38 38 H 1.08001 * 120.02588 * 359.97438 * 17 16 15 39 39 H 1.07999 * 119.97403 * 180.27525 * 18 17 16 40 40 H 1.08998 * 109.47080 * 124.97685 * 20 19 18 41 41 H 0.96700 * 113.99875 * 60.00016 * 21 20 19 42 42 H 1.48504 * 109.99878 * 58.68197 * 22 20 19 43 43 H 1.48497 * 110.00218 * 179.97438 * 22 20 19 44 44 H 1.07997 * 119.96754 * 180.02562 * 23 19 18 45 45 H 1.08003 * 120.02274 * 180.02562 * 24 23 19 46 46 H 1.08005 * 125.43998 * 179.97438 * 26 25 13 47 47 H 1.08005 * 127.02608 * 180.27158 * 27 26 25 48 48 H 1.09007 * 109.47360 * 179.97438 * 28 7 6 49 49 H 1.08997 * 109.47379 * 300.00069 * 28 7 6 50 50 H 1.09008 * 109.47401 * 180.02562 * 29 28 7 51 51 H 1.09001 * 109.47741 * 59.99690 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.4484 0.9242 5 6 3.1563 -0.8073 -1.1948 6 6 2.6460 -0.1769 -2.4922 7 6 3.1553 1.2622 -2.5947 8 1 4.2453 1.2627 -2.5947 9 7 2.6671 1.8656 -3.8372 10 6 3.3405 2.8887 -4.3994 11 8 4.3537 3.3108 -3.8756 12 6 2.8491 3.4961 -5.6492 13 6 3.4106 4.5297 -6.3401 14 6 4.6671 5.2677 -5.9557 15 8 5.7973 4.6250 -6.5486 16 6 7.0176 5.1687 -6.2989 17 6 7.1243 6.3009 -5.5043 18 6 8.3664 6.8480 -5.2468 19 6 9.5014 6.2755 -5.7905 20 6 10.8545 6.8784 -5.5135 21 8 11.4129 7.3752 -6.7315 22 14 10.6737 8.2776 -4.2970 23 6 9.3971 5.1504 -6.5875 24 6 8.1580 4.5959 -6.8428 25 8 2.6576 4.7759 -7.4165 26 6 1.6087 3.9402 -7.4686 27 6 1.6548 3.1108 -6.4149 28 6 2.6449 2.0701 -1.3999 29 6 3.1552 1.4398 -0.1026 30 1 -1.0501 0.0002 0.0007 31 1 2.7935 -1.8326 -1.1218 32 1 4.2463 -0.8064 -1.1951 33 1 1.5560 -0.1774 -2.4921 34 1 3.0100 -0.7523 -3.3434 35 1 1.8570 1.5314 -4.2531 36 1 4.6069 6.2967 -6.3101 37 1 4.7739 5.2626 -4.8709 38 1 6.2375 6.7515 -5.0836 39 1 8.4504 7.7268 -4.6246 40 1 11.5131 6.1168 -5.0961 41 1 10.8785 8.0581 -7.1594 42 1 10.0645 7.7800 -3.0374 43 1 12.0013 8.8803 -4.0150 44 1 10.2853 4.7049 -7.0107 45 1 8.0771 3.7169 -7.4651 46 1 0.8511 3.9334 -8.2382 47 1 0.9558 2.3226 -6.1766 48 1 3.0081 3.0953 -1.4727 49 1 1.5549 2.0696 -1.3999 50 1 2.7912 2.0151 0.7487 51 1 4.2453 1.4403 -0.1025 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4549634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:04:43 Heat of formation + Delta-G solvation = -6.404011 kcal Electronic energy + Delta-G solvation = -34405.751769 eV Core-core repulsion = 29819.248934 eV Total energy + Delta-G solvation = -4586.502835 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.166 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.73405 -41.31876 -41.10398 -39.50625 -39.20312 -37.18719 -35.83785 -34.22507 -33.09414 -32.79874 -32.00195 -31.87792 -31.40085 -30.37891 -27.87670 -26.20274 -25.15815 -23.86595 -23.77533 -23.51736 -22.42234 -22.09285 -21.66878 -20.89331 -19.51850 -19.24486 -18.31903 -18.16299 -17.47841 -17.41142 -17.23114 -16.96349 -16.78109 -16.48629 -16.28581 -15.97940 -15.91195 -15.72209 -15.42984 -15.38619 -15.21013 -14.76900 -14.64091 -14.36919 -14.21618 -14.09177 -13.84050 -13.78010 -13.70529 -13.49208 -13.25899 -13.11392 -12.93600 -12.34273 -12.27033 -12.24091 -12.08793 -12.07164 -11.79769 -11.78131 -11.54496 -11.20950 -11.00346 -10.94138 -10.85277 -10.41612 -10.17108 -10.07556 -9.84542 -9.26181 -5.01077 -0.05428 0.25111 0.27487 1.01645 1.32385 1.50124 1.63995 1.92998 1.95550 1.96222 2.02095 2.11905 2.45343 2.62775 3.32957 3.41256 3.53342 3.55447 3.64827 3.68188 3.73432 3.75787 3.78982 3.89873 3.93147 3.97980 4.07930 4.09990 4.17527 4.27550 4.40373 4.41251 4.42456 4.44414 4.46419 4.48519 4.58010 4.64454 4.65377 4.78674 4.83075 4.93669 5.00894 5.02445 5.09792 5.11255 5.12325 5.13102 5.23239 5.24329 5.27101 5.35469 5.44428 5.45770 5.66791 5.86915 6.24063 6.42363 6.74583 6.79153 7.08468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.194 4.194 3 C 0.016 3.984 4 H 0.104 0.896 5 C -0.106 4.106 6 C -0.120 4.120 7 C 0.150 3.850 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.584 3.416 11 O -0.570 6.570 12 C -0.225 4.225 13 C 0.041 3.959 14 C 0.135 3.865 15 O -0.323 6.323 16 C 0.124 3.876 17 C -0.205 4.205 18 C -0.074 4.074 19 C -0.161 4.161 20 C -0.069 4.069 21 O -0.556 6.556 22 Si 0.775 3.225 23 C -0.058 4.058 24 C -0.163 4.163 25 O -0.176 6.176 26 C -0.010 4.010 27 C -0.199 4.199 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.234 0.766 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.413 0.587 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.105 0.895 41 H 0.395 0.605 42 H -0.288 1.288 43 H -0.298 1.298 44 H 0.139 0.861 45 H 0.132 0.868 46 H 0.253 0.747 47 H 0.189 0.811 48 H 0.049 0.951 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 -0.234 -1.103 7.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.194 4.194 3 C -0.002 4.002 4 H 0.122 0.878 5 C -0.144 4.144 6 C -0.158 4.158 7 C 0.046 3.954 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.372 3.628 11 O -0.451 6.451 12 C -0.230 4.230 13 C -0.012 4.012 14 C 0.061 3.939 15 O -0.237 6.237 16 C 0.079 3.921 17 C -0.224 4.224 18 C -0.091 4.091 19 C -0.162 4.162 20 C -0.178 4.178 21 O -0.364 6.364 22 Si 0.682 3.318 23 C -0.077 4.077 24 C -0.182 4.182 25 O -0.071 6.071 26 C -0.076 4.076 27 C -0.218 4.218 28 C -0.161 4.161 29 C -0.144 4.144 30 H 0.251 0.749 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.123 0.877 41 H 0.245 0.755 42 H -0.216 1.216 43 H -0.226 1.226 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.269 0.731 47 H 0.207 0.793 48 H 0.068 0.932 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.622 -0.023 -0.140 5.624 hybrid contribution -0.664 -0.906 -0.027 1.124 sum -6.286 -0.929 -0.167 6.357 Atomic orbital electron populations 1.25556 0.96791 1.00380 1.00887 1.23328 0.94854 1.00745 1.00441 1.18476 0.84426 0.96750 1.00528 0.87789 1.21520 1.01681 0.99147 0.92034 1.21766 1.01693 0.93267 0.99054 1.20998 0.99112 0.92851 0.82472 0.90860 1.45774 1.29335 1.34398 1.26108 1.17447 0.82674 0.79762 0.82895 1.90770 1.26157 1.63204 1.64971 1.21404 1.00988 1.00985 0.99609 1.22057 0.94160 0.97802 0.87166 1.21143 0.78146 0.95306 0.99295 1.86049 1.13093 1.54391 1.70179 1.19179 0.84462 0.92969 0.95451 1.21424 1.00020 0.97807 1.03104 1.21012 0.91142 0.99193 0.97792 1.20356 0.95792 0.98338 1.01692 1.25107 0.92555 1.05182 0.94999 1.86461 1.51190 1.60576 1.38168 0.93809 0.80335 0.81227 0.76475 1.20945 0.96609 0.94370 0.95728 1.20619 0.90373 1.02775 1.04398 1.83794 1.32564 1.51475 1.39316 1.24907 0.90755 0.90177 1.01760 1.23240 0.98460 1.04172 0.95892 1.21839 1.00965 0.98802 0.94517 1.21509 1.01420 0.94413 0.97101 0.74928 0.90181 0.89747 0.90870 0.90351 0.75075 0.87875 0.87613 0.83384 0.83092 0.87744 0.75504 1.21557 1.22599 0.84358 0.84960 0.73126 0.79337 0.93216 0.91711 0.91272 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.05 19.25 74.32 1.43 1.38 16 2 C -0.19 -0.25 10.06 31.13 0.31 0.06 16 3 C 0.02 -0.02 3.07 -12.60 -0.04 -0.06 16 4 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 5 C -0.11 0.35 5.43 30.59 0.17 0.52 16 6 C -0.12 0.32 5.17 30.59 0.16 0.48 16 7 C 0.15 0.19 2.45 44.99 0.11 0.30 16 8 H 0.07 0.39 7.58 -2.38 -0.02 0.37 16 9 N -0.71 -0.82 5.08 -445.83 -2.26 -3.08 16 10 C 0.58 4.22 7.77 86.65 0.67 4.90 16 11 O -0.57 -7.94 14.51 -4.09 -0.06 -8.00 16 12 C -0.23 -1.03 6.31 -18.99 -0.12 -1.15 16 13 C 0.04 0.23 7.00 25.26 0.18 0.41 16 14 C 0.14 0.70 4.74 71.24 0.34 1.04 16 15 O -0.32 -3.11 10.12 -92.48 -0.94 -4.04 16 16 C 0.12 0.97 6.69 22.50 0.15 1.12 16 17 C -0.21 -0.76 9.04 22.37 0.20 -0.56 16 18 C -0.07 -0.12 8.66 22.25 0.19 0.07 16 19 C -0.16 -0.49 5.35 -19.85 -0.11 -0.59 16 20 C -0.07 -0.10 2.80 71.24 0.20 0.10 16 21 O -0.56 -1.01 12.83 -148.98 -1.91 -2.92 16 22 Si 0.78 -0.47 29.80 68.60 2.04 1.57 16 23 C -0.06 -0.28 9.68 22.25 0.22 -0.07 16 24 C -0.16 -1.14 9.99 22.36 0.22 -0.92 16 25 O -0.18 -0.50 10.52 4.47 0.05 -0.45 16 26 C -0.01 0.04 12.03 66.89 0.80 0.85 16 27 C -0.20 0.56 10.60 23.65 0.25 0.81 16 28 C -0.12 -0.25 5.27 30.59 0.16 -0.09 16 29 C -0.11 0.03 5.43 30.59 0.17 0.20 16 30 H 0.23 -1.28 7.80 -4.41 -0.03 -1.31 16 31 H 0.08 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.07 -0.20 7.23 -2.39 -0.02 -0.22 16 34 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 35 H 0.41 -1.78 7.77 -92.70 -0.72 -2.50 16 36 H 0.10 -0.01 7.65 -2.39 -0.02 -0.02 16 37 H 0.11 0.69 6.01 -2.39 -0.01 0.68 16 38 H 0.15 -0.06 6.30 -2.91 -0.02 -0.08 16 39 H 0.15 -0.56 4.90 -2.91 -0.01 -0.58 16 40 H 0.11 0.29 7.96 -2.39 -0.02 0.27 16 41 H 0.40 -2.49 8.70 -74.06 -0.64 -3.14 16 42 H -0.29 -1.32 7.11 99.48 0.71 -0.62 16 43 H -0.30 -1.96 7.11 99.48 0.71 -1.26 16 44 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 45 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 46 H 0.25 -3.31 8.06 -2.91 -0.02 -3.34 16 47 H 0.19 -1.81 7.74 -2.91 -0.02 -1.84 16 48 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 49 H 0.06 0.16 7.23 -2.39 -0.02 0.14 16 50 H 0.07 0.01 8.14 -2.38 -0.02 -0.01 16 51 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -23.92 421.91 2.24 -21.68 By element: Atomic # 1 Polarization: -13.18 SS G_CDS: -0.35 Total: -13.53 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.67 Total: 8.78 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -2.26 Total: -3.08 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -2.86 Total: -15.42 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: 2.04 Total: 1.57 kcal Total: -23.92 2.24 -21.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4549634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.280 kcal (2) G-P(sol) polarization free energy of solvation -23.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds