Wall clock time and date at job start Sun Mar 7 2021 08:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47343 * 297.05391 * 3 2 1 5 5 C 1.52994 * 109.46904 * 57.05835 * 3 2 1 6 6 C 1.53006 * 109.47341 * 60.00147 * 5 3 2 7 7 C 1.52994 * 109.47379 * 59.99493 * 6 5 3 8 8 H 1.09006 * 109.47258 * 60.00227 * 7 6 5 9 9 N 1.46498 * 109.47246 * 180.02562 * 7 6 5 10 10 C 1.34776 * 119.99799 * 275.00327 * 9 7 6 11 11 O 1.21278 * 120.00070 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99904 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.47391 * 179.97438 * 12 10 9 14 14 C 1.35987 * 117.00195 * 180.02562 * 13 12 10 15 15 C 1.39158 * 120.07341 * 180.02562 * 14 13 12 16 16 O 1.35990 * 120.07151 * 359.95406 * 15 14 13 17 17 C 1.42897 * 117.00217 * 179.97438 * 16 15 14 18 18 C 1.38566 * 119.85372 * 179.97438 * 15 14 13 19 19 C 1.38234 * 119.99993 * 0.02562 * 18 15 14 20 20 C 1.50705 * 119.92888 * 179.97438 * 19 18 15 21 21 O 1.42893 * 109.47157 * 255.00290 * 20 19 18 22 22 Si 1.86306 * 109.46560 * 14.99902 * 20 19 18 23 23 C 1.38256 * 120.14940 * 359.97438 * 19 18 15 24 24 N 1.48007 * 119.92755 * 180.27584 * 23 19 18 25 25 O 1.21795 * 119.99836 * 179.72219 * 24 23 19 26 26 O 1.21795 * 119.99701 * 359.72821 * 24 23 19 27 27 C 1.38245 * 120.14249 * 0.02562 * 23 19 18 28 28 C 1.53002 * 109.47241 * 300.00299 * 7 6 5 29 29 C 1.52998 * 109.46954 * 60.00129 * 28 7 6 30 30 H 4.18737 * 15.03940 * 359.97438 * 4 2 1 31 31 H 1.09004 * 109.47012 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47687 * 299.99630 * 5 3 2 33 33 H 1.09006 * 109.46740 * 299.99403 * 6 5 3 34 34 H 1.09006 * 109.47094 * 180.02562 * 6 5 3 35 35 H 0.97000 * 120.00391 * 94.99903 * 9 7 6 36 36 H 1.08999 * 109.47436 * 59.99665 * 12 10 9 37 37 H 1.08996 * 109.46974 * 299.99641 * 12 10 9 38 38 H 1.09004 * 109.47287 * 300.00173 * 17 16 15 39 39 H 1.09004 * 109.47118 * 59.99887 * 17 16 15 40 40 H 1.09000 * 109.47345 * 179.97438 * 17 16 15 41 41 H 1.07998 * 119.99870 * 180.02562 * 18 15 14 42 42 H 1.08998 * 109.47246 * 134.99954 * 20 19 18 43 43 H 0.96702 * 114.00512 * 59.99487 * 21 20 19 44 44 H 1.48491 * 110.00243 * 58.68493 * 22 20 19 45 45 H 1.48506 * 109.99492 * 179.97438 * 22 20 19 46 46 H 1.08000 * 119.99338 * 180.02562 * 27 23 19 47 47 H 1.08998 * 109.47211 * 179.97438 * 28 7 6 48 48 H 1.09001 * 109.47260 * 299.99802 * 28 7 6 49 49 H 1.08993 * 109.47474 * 60.00074 * 29 28 7 50 50 H 1.09002 * 109.46950 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.4666 0.9152 5 6 3.1563 -0.7835 -1.2105 6 6 2.6460 -0.1275 -2.4952 7 6 3.1553 1.3133 -2.5693 8 1 4.2453 1.3138 -2.5693 9 7 2.6662 1.9415 -3.7990 10 6 3.3426 1.7797 -4.9534 11 8 4.3564 1.1144 -4.9741 12 6 2.8398 2.4264 -6.2184 13 8 3.7215 2.1108 -7.2978 14 6 3.4096 2.6210 -8.5191 15 6 4.2240 2.3535 -9.6153 16 8 5.3340 1.5819 -9.4673 17 6 6.1226 1.3488 -10.6360 18 6 3.9016 2.8753 -10.8578 19 6 2.7734 3.6601 -11.0063 20 6 2.4246 4.2273 -12.3583 21 8 2.7366 5.6215 -12.3849 22 14 3.4067 3.3459 -13.6734 23 6 1.9642 3.9260 -9.9172 24 7 0.7541 4.7619 -10.0830 25 8 0.0376 4.9927 -9.1256 26 8 0.4748 5.2188 -11.1769 27 6 2.2802 3.4085 -8.6749 28 6 2.6449 2.0975 -1.3587 29 6 3.1553 1.4416 -0.0741 30 1 -1.0500 0.0002 0.0007 31 1 4.2463 -0.7826 -1.2108 32 1 2.7935 -1.8100 -1.1579 33 1 1.5560 -0.1281 -2.4952 34 1 3.0092 -0.6865 -3.3577 35 1 1.8555 2.4739 -3.7825 36 1 2.8031 3.5075 -6.0840 37 1 1.8406 2.0543 -6.4443 38 1 5.5156 0.8471 -11.3898 39 1 6.4780 2.3008 -11.0304 40 1 6.9758 0.7209 -10.3793 41 1 4.5318 2.6688 -11.7102 42 1 1.3598 4.0896 -12.5464 43 1 3.6696 5.8189 -12.2247 44 1 3.1151 1.8904 -13.6353 45 1 3.0713 3.8957 -15.0116 46 1 1.6461 3.6174 -7.8259 47 1 3.0081 3.1238 -1.4112 48 1 1.5549 2.0970 -1.3587 49 1 4.2452 1.4421 -0.0741 50 1 2.7913 2.0000 0.7883 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4549636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:04:47 Heat of formation + Delta-G solvation = -48.944070 kcal Electronic energy + Delta-G solvation = -36643.562098 eV Core-core repulsion = 31608.876574 eV Total energy + Delta-G solvation = -5034.685524 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.160 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.41781 -42.13569 -41.30232 -40.08804 -39.34033 -39.10020 -37.75266 -37.14114 -35.83799 -33.28910 -32.68656 -32.53965 -31.85966 -30.99068 -29.24286 -28.63833 -27.91738 -25.84665 -24.33979 -23.77278 -23.61414 -23.16483 -21.72906 -21.63532 -20.77979 -19.88190 -19.51896 -18.83223 -18.70087 -18.52155 -18.15107 -17.75500 -17.58563 -17.49394 -17.11091 -16.85683 -16.44517 -16.32861 -16.09301 -15.75780 -15.62995 -15.36227 -15.23512 -15.06068 -14.79291 -14.40243 -14.09225 -13.96974 -13.88592 -13.72509 -13.49093 -13.24331 -13.03872 -12.92567 -12.68103 -12.51077 -12.45151 -12.34188 -12.30890 -12.28777 -12.22194 -12.21718 -11.79170 -11.78788 -11.53032 -11.14919 -10.95487 -10.83027 -10.54028 -10.46943 -10.19093 -9.50310 -5.13935 -1.37870 -0.44643 0.14990 0.29167 1.12431 1.22603 1.37535 1.57061 1.88370 1.89018 1.93518 1.93608 1.96260 2.32748 2.96957 3.16139 3.25679 3.40745 3.44431 3.49270 3.55318 3.69576 3.75221 3.85832 3.92334 3.92688 3.99586 4.04832 4.09403 4.10396 4.19264 4.21869 4.38814 4.41188 4.42647 4.45646 4.49137 4.54135 4.62641 4.72302 4.81628 4.84439 5.01842 5.03351 5.10431 5.13285 5.14986 5.23693 5.28335 5.34811 5.42143 5.57794 6.05187 6.37277 6.45300 6.71358 6.75000 7.05400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.193 4.193 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.107 4.107 6 C -0.125 4.125 7 C 0.150 3.850 8 H 0.076 0.924 9 N -0.708 5.708 10 C 0.517 3.483 11 O -0.563 6.563 12 C 0.027 3.973 13 O -0.289 6.289 14 C 0.100 3.900 15 C 0.172 3.828 16 O -0.307 6.307 17 C -0.004 4.004 18 C -0.162 4.162 19 C -0.040 4.040 20 C -0.092 4.092 21 O -0.536 6.536 22 Si 0.788 3.212 23 C -0.046 4.046 24 N 0.035 4.965 25 O -0.188 6.188 26 O -0.164 6.164 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.107 4.107 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.418 0.582 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.195 0.805 42 H 0.115 0.885 43 H 0.393 0.607 44 H -0.272 1.272 45 H -0.291 1.291 46 H 0.182 0.818 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -1.021 1.769 5.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.193 4.193 3 C -0.002 4.002 4 H 0.121 0.879 5 C -0.145 4.145 6 C -0.164 4.164 7 C 0.046 3.954 8 H 0.094 0.906 9 N -0.362 5.362 10 C 0.303 3.697 11 O -0.440 6.440 12 C -0.051 4.051 13 O -0.202 6.202 14 C 0.053 3.947 15 C 0.123 3.877 16 O -0.219 6.219 17 C -0.098 4.098 18 C -0.181 4.181 19 C -0.042 4.042 20 C -0.200 4.200 21 O -0.343 6.343 22 Si 0.690 3.310 23 C -0.131 4.131 24 N 0.548 4.452 25 O -0.398 6.398 26 O -0.378 6.378 27 C -0.130 4.130 28 C -0.158 4.158 29 C -0.144 4.144 30 H 0.249 0.751 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.256 0.744 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.211 0.789 42 H 0.132 0.868 43 H 0.242 0.758 44 H -0.198 1.198 45 H -0.218 1.218 46 H 0.199 0.801 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.747 -2.544 1.269 6.412 hybrid contribution -2.033 0.544 0.234 2.118 sum 3.714 -2.000 1.503 4.478 Atomic orbital electron populations 1.25545 0.96804 1.00482 1.00944 1.23352 0.94878 1.00686 1.00362 1.18491 0.84305 0.97627 0.99803 0.87865 1.21509 1.01499 0.98925 0.92576 1.21863 1.01049 0.95611 0.97878 1.20996 0.99281 0.92091 0.83008 0.90577 1.45816 1.29516 1.53487 1.07354 1.20285 0.83672 0.80531 0.85248 1.90773 1.26220 1.40950 1.86094 1.22901 0.94830 1.03333 0.84012 1.86299 1.49951 1.69825 1.14129 1.17974 0.93782 0.97591 0.85398 1.18671 0.87219 0.90647 0.91178 1.86333 1.33546 1.63282 1.38691 1.23819 0.95421 1.04417 0.86113 1.21086 0.98556 1.01372 0.97080 1.20233 0.92863 0.95296 0.95780 1.25780 1.07573 0.88555 0.98074 1.86667 1.33144 1.20201 1.94288 0.94389 0.86601 0.75704 0.74297 1.20557 0.90640 1.04774 0.97080 1.43721 1.01908 0.99408 1.00124 1.94503 1.48953 1.64234 1.32157 1.94572 1.77686 1.52698 1.12865 1.20893 0.97167 0.97281 0.97697 1.21775 1.01716 0.99553 0.92767 1.21526 1.01785 0.93543 0.97586 0.75069 0.89977 0.91463 0.91654 0.93321 0.74432 0.85413 0.85806 0.90185 0.88778 0.86068 0.78879 0.86823 0.75775 1.19786 1.21782 0.80128 0.89900 0.90909 0.89561 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.03 19.25 74.32 1.43 1.46 16 2 C -0.19 -0.12 10.06 31.13 0.31 0.19 16 3 C 0.02 -0.04 3.07 -12.60 -0.04 -0.08 16 4 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 5 C -0.11 0.15 5.43 30.59 0.17 0.32 16 6 C -0.13 -0.06 5.27 30.59 0.16 0.11 16 7 C 0.15 -0.22 2.45 44.99 0.11 -0.11 16 8 H 0.08 0.18 7.58 -2.38 -0.02 0.16 16 9 N -0.71 2.48 5.08 -442.54 -2.25 0.23 16 10 C 0.52 1.13 7.87 87.66 0.69 1.82 16 11 O -0.56 -7.16 16.16 16.01 0.26 -6.90 16 12 C 0.03 -0.09 5.22 71.24 0.37 0.28 16 13 O -0.29 -1.08 9.45 -66.99 -0.63 -1.71 16 14 C 0.10 0.09 6.70 22.57 0.15 0.24 16 15 C 0.17 -0.17 6.70 22.57 0.15 -0.01 16 16 O -0.31 0.10 10.28 -79.57 -0.82 -0.72 16 17 C 0.00 0.05 9.81 113.37 1.11 1.16 16 18 C -0.16 0.84 7.65 22.35 0.17 1.01 16 19 C -0.04 0.02 5.26 -19.86 -0.10 -0.09 16 20 C -0.09 -0.01 1.74 71.24 0.12 0.11 16 21 O -0.54 -0.64 11.81 -129.70 -1.53 -2.17 16 22 Si 0.79 -4.18 29.91 68.60 2.05 -2.13 16 23 C -0.05 -0.17 6.85 36.38 0.25 0.08 16 24 N 0.04 0.35 4.45 -46.46 -0.21 0.15 16 25 O -0.19 -2.09 18.44 18.89 0.35 -1.75 16 26 O -0.16 -2.15 14.63 25.09 0.37 -1.78 16 27 C -0.11 0.01 8.54 22.35 0.19 0.20 16 28 C -0.12 0.60 5.17 30.59 0.16 0.76 16 29 C -0.11 0.52 5.43 30.60 0.17 0.69 16 30 H 0.23 -1.28 7.80 -4.42 -0.03 -1.31 16 31 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.06 0.05 7.23 -2.38 -0.02 0.04 16 34 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.42 -4.18 8.60 -92.71 -0.80 -4.98 16 36 H 0.13 -1.20 7.66 -2.39 -0.02 -1.22 16 37 H 0.12 -1.09 7.67 -2.39 -0.02 -1.11 16 38 H 0.08 -1.05 7.67 -2.38 -0.02 -1.06 16 39 H 0.09 -1.44 7.66 -2.38 -0.02 -1.46 16 40 H 0.12 -1.40 8.14 -2.39 -0.02 -1.42 16 41 H 0.19 -2.44 3.36 -2.91 -0.01 -2.45 16 42 H 0.11 0.57 6.06 -2.39 -0.01 0.56 16 43 H 0.39 -3.48 8.70 -74.06 -0.64 -4.13 16 44 H -0.27 0.53 7.11 99.48 0.71 1.23 16 45 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 46 H 0.18 -0.78 5.85 -2.91 -0.02 -0.80 16 47 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 48 H 0.07 -0.34 7.23 -2.39 -0.02 -0.35 16 49 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 50 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -31.89 415.08 2.78 -29.11 By element: Atomic # 1 Polarization: -20.08 SS G_CDS: -0.38 Total: -20.46 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.57 Total: 8.13 kcal Atomic # 7 Polarization: 2.83 SS G_CDS: -2.45 Total: 0.38 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -2.01 Total: -15.03 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.05 Total: -2.13 kcal Total: -31.89 2.78 -29.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4549636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.831 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds