Wall clock time and date at job start Sun Mar 7 2021 08:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08995 * 109.46908 * 206.52904 * 3 2 1 5 5 C 1.52999 * 109.46986 * 326.52619 * 3 2 1 6 6 C 1.52999 * 109.47246 * 60.00311 * 5 3 2 7 7 C 1.52998 * 109.47203 * 59.99536 * 6 5 3 8 8 H 1.09001 * 109.46890 * 60.00799 * 7 6 5 9 9 N 1.46508 * 109.46790 * 180.02562 * 7 6 5 10 10 C 1.34778 * 119.99466 * 205.00129 * 9 7 6 11 11 O 1.21284 * 120.00326 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99615 * 179.97438 * 10 9 7 13 13 O 1.42904 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.35892 * 117.00431 * 180.02562 * 13 12 10 15 15 C 1.38707 * 120.05628 * 179.97438 * 14 13 12 16 16 C 1.38172 * 119.94473 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.97116 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47341 * 300.00156 * 17 16 15 19 19 Si 1.86300 * 109.46849 * 180.02562 * 17 16 15 20 20 C 1.38239 * 120.05323 * 0.25963 * 16 15 14 21 21 C 1.38284 * 120.11328 * 359.48513 * 20 16 15 22 22 C 1.38122 * 120.05692 * 0.51187 * 21 20 16 23 23 C 1.52991 * 109.47253 * 299.99958 * 7 6 5 24 24 C 1.52999 * 109.47206 * 60.00224 * 23 7 6 25 25 H 4.18739 * 15.03923 * 359.97438 * 4 2 1 26 26 H 1.08996 * 109.47276 * 299.99795 * 5 3 2 27 27 H 1.09000 * 109.46553 * 180.02562 * 5 3 2 28 28 H 1.09008 * 109.46942 * 299.99600 * 6 5 3 29 29 H 1.09003 * 109.47083 * 180.02562 * 6 5 3 30 30 H 0.96993 * 120.00102 * 25.00381 * 9 7 6 31 31 H 1.09003 * 109.47443 * 60.00272 * 12 10 9 32 32 H 1.09003 * 109.47522 * 300.00130 * 12 10 9 33 33 H 1.08005 * 120.03037 * 0.04634 * 15 14 13 34 34 H 1.09000 * 109.46989 * 60.00486 * 17 16 15 35 35 H 0.96693 * 114.00306 * 299.99773 * 18 17 16 36 36 H 1.48506 * 110.00048 * 58.68772 * 19 17 16 37 37 H 1.48502 * 109.99996 * 180.02562 * 19 17 16 38 38 H 1.08004 * 119.94122 * 179.72243 * 20 16 15 39 39 H 1.08005 * 119.97459 * 180.23844 * 21 20 16 40 40 H 1.08000 * 120.03403 * 179.76655 * 22 21 20 41 41 H 1.09003 * 109.47497 * 179.97438 * 23 7 6 42 42 H 1.09001 * 109.47859 * 300.00247 * 23 7 6 43 43 H 1.08997 * 109.47433 * 180.02562 * 24 23 7 44 44 H 1.09005 * 109.47178 * 59.99320 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9202 0.4590 5 6 3.1565 -1.2024 0.7956 6 6 2.6472 -2.4932 0.1514 7 6 3.1572 -2.5804 -1.2885 8 1 4.2472 -2.5800 -1.2884 9 7 2.6689 -3.8162 -1.9055 10 6 3.3458 -4.3706 -2.9307 11 8 4.3588 -3.8462 -3.3427 12 6 2.8439 -5.6421 -3.5650 13 8 3.7259 -6.0280 -4.6210 14 6 3.4145 -7.1623 -5.3015 15 6 4.2268 -7.5952 -6.3391 16 6 3.9077 -8.7485 -7.0299 17 6 4.7896 -9.2190 -8.1577 18 8 4.8442 -8.2131 -9.1712 19 14 4.0915 -10.7887 -8.8784 20 6 2.7769 -9.4679 -6.6910 21 6 1.9683 -9.0414 -5.6536 22 6 2.2829 -7.8892 -4.9599 23 6 2.6466 -1.3775 -2.0840 24 6 3.1560 -0.0866 -1.4399 25 1 -1.0500 -0.0006 -0.0009 26 1 2.7932 -1.1403 1.8214 27 1 4.2465 -1.2016 0.7960 28 1 1.5571 -2.4938 0.1514 29 1 3.0105 -3.3503 0.7185 30 1 1.8585 -4.2353 -1.5763 31 1 1.8445 -5.4773 -3.9678 32 1 2.8076 -6.4325 -2.8152 33 1 5.1083 -7.0313 -6.6068 34 1 5.7940 -9.4080 -7.7789 35 1 3.9839 -7.9937 -9.5542 36 1 2.7103 -10.5516 -9.3699 37 1 4.9525 -11.2634 -9.9913 38 1 2.5268 -10.3668 -7.2351 39 1 1.0875 -9.6073 -5.3882 40 1 1.6490 -7.5543 -4.1522 41 1 3.0103 -1.4393 -3.1097 42 1 1.5566 -1.3779 -2.0841 43 1 2.7919 0.7705 -2.0064 44 1 4.2460 -0.0861 -1.4398 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_4860298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:05:03 Heat of formation + Delta-G solvation = -25.804419 kcal Electronic energy + Delta-G solvation = -25363.563968 eV Core-core repulsion = 21635.118101 eV Total energy + Delta-G solvation = -3728.445867 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.151 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65844 -40.96579 -39.69729 -38.88905 -37.36258 -35.83544 -33.26761 -32.49547 -31.86901 -31.79502 -30.68192 -28.73817 -26.82336 -24.15935 -23.76561 -23.68286 -22.50518 -21.73488 -21.42278 -19.37316 -18.76113 -18.12681 -17.87156 -17.45641 -17.33427 -17.09960 -16.86882 -16.25992 -16.25036 -15.74497 -15.53701 -15.35872 -15.18732 -15.00650 -14.72159 -14.16603 -14.05395 -13.96502 -13.84340 -13.45499 -13.24342 -13.00796 -12.93169 -12.61720 -12.32060 -12.23228 -12.13355 -12.03480 -11.79385 -11.62345 -11.53118 -11.11205 -10.95615 -10.82185 -10.69414 -10.18967 -9.94027 -9.30128 -4.91259 0.19382 0.38072 1.27028 1.40051 1.47445 1.61843 1.93755 1.96288 1.96726 2.56181 2.65641 3.38355 3.41344 3.47809 3.64773 3.68862 3.74677 3.83758 3.97088 3.99527 4.04257 4.08668 4.11766 4.18754 4.23968 4.36018 4.41823 4.44852 4.48567 4.53840 4.61761 4.63432 4.83694 4.97371 5.01365 5.02643 5.09409 5.12576 5.14380 5.23494 5.27586 5.34983 5.36096 5.42706 5.43907 5.68463 6.25589 6.43982 6.45213 6.75193 7.08732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.194 4.194 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.107 4.107 6 C -0.119 4.119 7 C 0.149 3.851 8 H 0.072 0.928 9 N -0.707 5.707 10 C 0.512 3.488 11 O -0.571 6.571 12 C 0.038 3.962 13 O -0.323 6.323 14 C 0.113 3.887 15 C -0.151 4.151 16 C -0.082 4.082 17 C -0.095 4.095 18 O -0.551 6.551 19 Si 0.787 3.213 20 C -0.157 4.157 21 C -0.070 4.070 22 C -0.202 4.202 23 C -0.125 4.125 24 C -0.108 4.108 25 H 0.234 0.766 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.419 0.581 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.386 0.614 36 H -0.276 1.276 37 H -0.305 1.305 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 -3.845 6.369 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.194 4.194 3 C -0.002 4.002 4 H 0.121 0.879 5 C -0.145 4.145 6 C -0.156 4.156 7 C 0.045 3.955 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.298 3.702 11 O -0.450 6.450 12 C -0.039 4.039 13 O -0.237 6.237 14 C 0.068 3.932 15 C -0.169 4.169 16 C -0.082 4.082 17 C -0.203 4.203 18 O -0.360 6.360 19 Si 0.691 3.309 20 C -0.174 4.174 21 C -0.088 4.088 22 C -0.221 4.221 23 C -0.164 4.164 24 C -0.146 4.146 25 H 0.251 0.749 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.257 0.743 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.235 0.765 36 H -0.202 1.202 37 H -0.234 1.234 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.177 0.823 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.071 -3.741 5.506 9.009 hybrid contribution -0.674 1.302 -0.613 1.589 sum -6.744 -2.439 4.893 8.682 Atomic orbital electron populations 1.25558 0.96777 1.00853 1.00353 1.23321 0.94832 1.00477 1.00767 1.18471 0.84448 1.00614 0.96654 0.87903 1.21527 1.01700 0.92070 0.99188 1.21764 1.01800 0.99135 0.92937 1.20987 0.99123 0.82589 0.92810 0.91005 1.45789 1.29516 1.26660 1.34073 1.20564 0.83560 0.85795 0.80243 1.90761 1.26684 1.64530 1.62986 1.22721 0.94680 0.95744 0.90780 1.86123 1.50963 1.40048 1.46560 1.19206 0.95042 0.86310 0.92648 1.20297 1.01217 0.98630 0.96801 1.20139 0.96413 0.94630 0.97019 1.25491 1.05006 1.01107 0.88689 1.86577 1.36314 1.58407 1.54658 0.93879 0.75781 0.78557 0.82721 1.21222 0.95030 1.01027 1.00131 1.21337 0.99396 0.94800 0.93235 1.21635 0.97714 0.98217 1.04516 1.21856 1.01126 0.94714 0.98667 1.21512 1.01392 0.97188 0.94490 0.74914 0.90094 0.89774 0.90679 0.89851 0.74324 0.85983 0.85546 0.87068 0.86275 0.76471 1.20246 1.23385 0.83280 0.81906 0.82261 0.93654 0.91414 0.91465 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.11 19.25 74.32 1.43 1.54 16 2 C -0.19 -0.12 10.06 31.12 0.31 0.20 16 3 C 0.02 -0.03 3.07 -12.60 -0.04 -0.07 16 4 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 5 C -0.11 0.48 5.43 30.59 0.17 0.65 16 6 C -0.12 0.57 5.17 30.59 0.16 0.72 16 7 C 0.15 -0.07 2.45 44.99 0.11 0.04 16 8 H 0.07 0.30 7.58 -2.39 -0.02 0.28 16 9 N -0.71 1.88 5.08 -442.53 -2.25 -0.36 16 10 C 0.51 2.14 7.87 87.66 0.69 2.83 16 11 O -0.57 -9.07 16.16 15.99 0.26 -8.81 16 12 C 0.04 -0.07 5.22 71.23 0.37 0.30 16 13 O -0.32 -2.57 9.67 -73.30 -0.71 -3.28 16 14 C 0.11 0.56 6.69 22.51 0.15 0.71 16 15 C -0.15 -1.08 9.55 22.37 0.21 -0.86 16 16 C -0.08 -0.21 5.39 -19.88 -0.11 -0.31 16 17 C -0.10 -0.19 2.82 71.24 0.20 0.01 16 18 O -0.55 -3.26 12.77 -148.98 -1.90 -5.17 16 19 Si 0.79 -1.40 29.79 68.60 2.04 0.64 16 20 C -0.16 0.31 8.67 22.28 0.19 0.50 16 21 C -0.07 0.29 10.04 22.25 0.22 0.51 16 22 C -0.20 0.45 9.04 22.37 0.20 0.65 16 23 C -0.12 -0.19 5.27 30.59 0.16 -0.03 16 24 C -0.11 0.04 5.43 30.59 0.17 0.21 16 25 H 0.23 -1.45 7.80 -4.42 -0.03 -1.48 16 26 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.07 -0.37 7.23 -2.38 -0.02 -0.39 16 29 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.42 -4.22 8.60 -92.71 -0.80 -5.02 16 31 H 0.12 -0.97 7.66 -2.39 -0.02 -0.99 16 32 H 0.13 -1.09 7.66 -2.39 -0.02 -1.11 16 33 H 0.11 1.20 8.06 -2.91 -0.02 1.17 16 34 H 0.12 0.16 7.96 -2.39 -0.02 0.14 16 35 H 0.39 -0.07 8.70 -74.06 -0.64 -0.72 16 36 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 37 H -0.31 -1.91 7.11 99.48 0.71 -1.21 16 38 H 0.15 -0.98 4.87 -2.91 -0.01 -0.99 16 39 H 0.16 -1.70 8.06 -2.91 -0.02 -1.73 16 40 H 0.16 -1.45 6.30 -2.91 -0.02 -1.46 16 41 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.07 0.09 7.23 -2.39 -0.02 0.07 16 43 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.08 -0.07 8.14 -2.38 -0.02 -0.09 16 Total: 0.00 -25.69 363.79 1.66 -24.03 By element: Atomic # 1 Polarization: -14.27 SS G_CDS: -0.39 Total: -14.66 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.61 Total: 7.60 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -2.25 Total: -0.36 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -2.35 Total: -17.25 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.04 Total: 0.64 kcal Total: -25.69 1.66 -24.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_4860298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.777 kcal (2) G-P(sol) polarization free energy of solvation -25.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds