Wall clock time and date at job start Sun Mar 7 2021 08:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47169 * 214.12071 * 3 2 1 5 5 C 1.53002 * 109.47405 * 334.12623 * 3 2 1 6 6 C 1.52992 * 109.47106 * 60.00058 * 5 3 2 7 7 C 1.52997 * 109.47482 * 60.00162 * 6 5 3 8 8 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 9 9 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 10 10 C 1.34769 * 119.99798 * 274.99913 * 9 7 6 11 11 O 1.21650 * 120.00627 * 0.02562 * 10 9 7 12 12 C 1.47001 * 119.99631 * 179.97438 * 10 9 7 13 13 C 1.35805 * 125.13871 * 179.72025 * 12 10 9 14 14 C 1.46251 * 106.08910 * 179.86614 * 13 12 10 15 15 C 1.39782 * 134.15457 * 180.11871 * 14 13 12 16 16 C 1.50699 * 120.09236 * 0.27211 * 15 14 13 17 17 O 1.42890 * 109.47652 * 285.00907 * 16 15 14 18 18 Si 1.86302 * 109.46926 * 165.00455 * 16 15 14 19 19 C 1.36625 * 119.81365 * 180.28311 * 15 14 13 20 20 C 1.38770 * 120.49436 * 359.97438 * 19 15 14 21 21 C 1.38262 * 120.67922 * 0.02562 * 20 19 15 22 22 O 1.35967 * 120.11912 * 179.97438 * 21 20 19 23 23 C 1.42899 * 117.00305 * 0.02562 * 22 21 20 24 24 C 1.39444 * 119.75776 * 359.97438 * 21 20 19 25 25 O 1.34770 * 133.24625 * 180.02562 * 24 21 20 26 26 C 1.53002 * 109.46817 * 300.00014 * 7 6 5 27 27 C 1.52997 * 109.47415 * 59.99873 * 26 7 6 28 28 H 4.18740 * 15.03820 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.47070 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.46550 * 299.99653 * 5 3 2 31 31 H 1.09002 * 109.47103 * 299.99915 * 6 5 3 32 32 H 1.08998 * 109.46862 * 180.02562 * 6 5 3 33 33 H 0.97005 * 119.99239 * 94.99888 * 9 7 6 34 34 H 1.08007 * 126.95660 * 359.97044 * 13 12 10 35 35 H 1.09006 * 109.46556 * 45.01226 * 16 15 14 36 36 H 0.96699 * 114.00358 * 180.02562 * 17 16 15 37 37 H 1.48492 * 109.99914 * 60.00394 * 18 16 15 38 38 H 1.48502 * 109.99862 * 181.32456 * 18 16 15 39 39 H 1.08000 * 119.75628 * 180.02562 * 19 15 14 40 40 H 1.08005 * 119.66137 * 179.97438 * 20 19 15 41 41 H 1.09008 * 109.46572 * 60.00088 * 23 22 21 42 42 H 1.08998 * 109.46942 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.47487 * 300.00420 * 23 22 21 44 44 H 1.09000 * 109.46986 * 179.97438 * 26 7 6 45 45 H 1.09002 * 109.47075 * 299.99262 * 26 7 6 46 46 H 1.09002 * 109.47045 * 59.99931 * 27 26 7 47 47 H 1.08998 * 109.47171 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.8515 0.5764 5 6 3.1566 -1.2970 0.6295 6 6 2.6472 -2.4913 -0.1797 7 6 3.1572 -2.3873 -1.6185 8 1 4.2472 -2.3868 -1.6185 9 7 2.6698 -3.5313 -2.3932 10 6 3.3477 -4.6960 -2.3740 11 8 4.3639 -4.7976 -1.7131 12 6 2.8584 -5.8440 -3.1509 13 6 3.4595 -7.0603 -3.2111 14 6 2.6273 -7.8805 -4.0908 15 6 2.6988 -9.1998 -4.5472 16 6 3.8328 -10.0904 -4.1092 17 8 5.0255 -9.7191 -4.8030 18 14 3.4150 -11.8640 -4.4975 19 6 1.7378 -9.6794 -5.3916 20 6 0.6898 -8.8667 -5.7999 21 6 0.5991 -7.5587 -5.3611 22 8 -0.4324 -6.7722 -5.7688 23 6 -1.3887 -7.3623 -6.6515 24 6 1.5693 -7.0491 -4.4988 25 8 1.7469 -5.8471 -3.9157 26 6 2.6465 -1.0897 -2.2480 27 6 3.1559 0.1047 -1.4388 28 1 -1.0500 -0.0005 -0.0009 29 1 4.2467 -1.2967 0.6290 30 1 2.7934 -1.3710 1.6545 31 1 1.5572 -2.4918 -0.1797 32 1 3.0107 -3.4157 0.2690 33 1 1.8593 -3.4504 -2.9199 34 1 4.3673 -7.3615 -2.7095 35 1 3.9875 -9.9803 -3.0358 36 1 5.7980 -10.2521 -4.5703 37 1 3.2015 -12.0274 -5.9579 38 1 4.5115 -12.7556 -4.0415 39 1 1.7937 -10.6990 -5.7433 40 1 -0.0624 -9.2596 -6.4680 41 1 -1.8502 -8.2218 -6.1651 42 1 -2.1566 -6.6290 -6.8979 43 1 -0.8890 -7.6865 -7.5643 44 1 3.0101 -1.0154 -3.2728 45 1 1.5565 -1.0903 -2.2480 46 1 4.2459 0.1052 -1.4388 47 1 2.7925 1.0291 -1.8875 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_6672420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:05:28 Heat of formation + Delta-G solvation = -14.304928 kcal Electronic energy + Delta-G solvation = -31291.023474 eV Core-core repulsion = 26987.941789 eV Total energy + Delta-G solvation = -4303.081685 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.79590 -41.33492 -40.60628 -39.54665 -39.02345 -37.22924 -35.97574 -33.70287 -33.25298 -32.05691 -31.87919 -31.31863 -30.17691 -28.51122 -26.32659 -25.45936 -24.04648 -23.79363 -23.53748 -21.85425 -21.78215 -21.66003 -19.83704 -18.94767 -18.60947 -18.54772 -18.13823 -17.77275 -17.57308 -17.04502 -16.62911 -16.53018 -16.33248 -15.94099 -15.72297 -15.61423 -15.38352 -15.20338 -14.79279 -14.59926 -14.26285 -14.06658 -14.01786 -13.94605 -13.81119 -13.40415 -13.25666 -13.24204 -12.95941 -12.55444 -12.39896 -12.37887 -12.23719 -12.08036 -11.82038 -11.74702 -11.69412 -11.48724 -11.06272 -10.96862 -10.88073 -10.49612 -10.32929 -9.86691 -9.04020 -4.90807 -0.71057 0.05890 0.57651 1.13927 1.28353 1.61357 1.84304 1.85493 1.93084 1.93221 1.96398 2.10451 2.33039 3.11009 3.34412 3.42235 3.52411 3.62718 3.68908 3.73349 3.79197 3.91336 3.95114 3.97512 4.07766 4.11272 4.16862 4.30570 4.34542 4.40436 4.40607 4.41376 4.43372 4.46872 4.60099 4.74607 4.79383 4.82857 4.82952 4.96287 5.00274 5.01737 5.08851 5.11870 5.13218 5.18841 5.23980 5.28387 5.33011 5.39785 5.55102 6.15195 6.25557 6.57557 6.74770 6.76843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.192 4.192 3 C 0.015 3.985 4 H 0.108 0.892 5 C -0.105 4.105 6 C -0.126 4.126 7 C 0.146 3.854 8 H 0.086 0.914 9 N -0.702 5.702 10 C 0.604 3.396 11 O -0.541 6.541 12 C -0.035 4.035 13 C -0.110 4.110 14 C -0.098 4.098 15 C -0.065 4.065 16 C -0.093 4.093 17 O -0.557 6.557 18 Si 0.779 3.221 19 C -0.090 4.090 20 C -0.165 4.165 21 C 0.137 3.863 22 O -0.332 6.332 23 C 0.013 3.987 24 C 0.021 3.979 25 O -0.181 6.181 26 C -0.122 4.122 27 C -0.104 4.104 28 H 0.232 0.768 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.414 0.586 34 H 0.176 0.824 35 H 0.086 0.914 36 H 0.395 0.605 37 H -0.280 1.280 38 H -0.286 1.286 39 H 0.162 0.838 40 H 0.181 0.819 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -1.970 -1.271 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.192 4.192 3 C -0.002 4.002 4 H 0.126 0.874 5 C -0.143 4.143 6 C -0.165 4.165 7 C 0.043 3.957 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.389 3.611 11 O -0.421 6.421 12 C -0.085 4.085 13 C -0.131 4.131 14 C -0.099 4.099 15 C -0.065 4.065 16 C -0.200 4.200 17 O -0.367 6.367 18 Si 0.682 3.318 19 C -0.107 4.107 20 C -0.184 4.184 21 C 0.091 3.909 22 O -0.246 6.246 23 C -0.080 4.080 24 C -0.027 4.027 25 O -0.083 6.083 26 C -0.160 4.160 27 C -0.142 4.142 28 H 0.249 0.751 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.193 0.807 35 H 0.104 0.896 36 H 0.245 0.755 37 H -0.207 1.207 38 H -0.213 1.213 39 H 0.179 0.821 40 H 0.199 0.801 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.489 -1.832 -1.476 5.068 hybrid contribution 0.660 0.198 -0.309 0.755 sum -3.829 -1.634 -1.785 4.530 Atomic orbital electron populations 1.25553 0.96852 1.00971 1.00661 1.23401 0.94967 1.00320 1.00545 1.18517 0.84173 0.99449 0.98103 0.87433 1.21510 1.01754 0.92104 0.98926 1.21877 1.00997 0.98870 0.94741 1.21183 0.99784 0.84252 0.90503 0.89543 1.46000 1.28908 1.11052 1.49179 1.16652 0.83124 0.81416 0.79889 1.90877 1.25191 1.82848 1.43156 1.21990 0.89353 0.97430 0.99700 1.22843 1.00489 0.90957 0.98796 1.19599 0.94830 0.95048 1.00439 1.18666 0.96924 0.91748 0.99170 1.25160 0.85571 1.09929 0.99364 1.86568 1.19831 1.61941 1.68387 0.93941 0.86946 0.70778 0.80134 1.20839 0.93173 1.01281 0.95420 1.21355 1.02151 0.90619 1.04258 1.17952 0.87687 0.90643 0.94576 1.86143 1.34698 1.40207 1.63594 1.23497 0.90639 1.01447 0.92445 1.19190 0.98371 0.84422 1.00750 1.84008 1.39811 1.32292 1.52216 1.21794 1.01598 0.92645 1.00004 1.21520 1.01982 0.97849 0.92866 0.75127 0.89473 0.91100 0.91974 0.92761 0.74939 0.80699 0.89648 0.75497 1.20708 1.21344 0.82137 0.80147 0.90360 0.86521 0.90938 0.90247 0.91279 0.89154 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.41 19.25 74.32 1.43 1.02 16 2 C -0.19 -0.46 10.06 31.12 0.31 -0.15 16 3 C 0.02 -0.02 3.07 -12.60 -0.04 -0.06 16 4 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 5 C -0.11 0.05 5.43 30.59 0.17 0.22 16 6 C -0.13 -0.35 5.27 30.59 0.16 -0.19 16 7 C 0.15 0.32 2.45 44.99 0.11 0.43 16 8 H 0.09 0.36 7.58 -2.39 -0.02 0.35 16 9 N -0.70 -2.95 5.07 -446.20 -2.26 -5.21 16 10 C 0.60 5.79 7.76 86.54 0.67 6.46 16 11 O -0.54 -7.97 16.49 -4.19 -0.07 -8.04 16 12 C -0.03 -0.34 7.07 24.00 0.17 -0.17 16 13 C -0.11 -1.03 10.68 23.79 0.25 -0.77 16 14 C -0.10 -0.84 6.16 -20.24 -0.12 -0.96 16 15 C -0.06 -0.29 5.30 -19.87 -0.11 -0.39 16 16 C -0.09 -0.09 2.70 71.24 0.19 0.10 16 17 O -0.56 -2.17 12.86 -148.98 -1.92 -4.09 16 18 Si 0.78 -2.51 30.20 68.60 2.07 -0.44 16 19 C -0.09 -0.04 8.62 22.02 0.19 0.15 16 20 C -0.17 0.08 9.03 22.40 0.20 0.28 16 21 C 0.14 0.72 6.70 22.57 0.15 0.87 16 22 O -0.33 -1.36 10.50 -93.17 -0.98 -2.34 16 23 C 0.01 -0.08 9.81 113.37 1.11 1.04 16 24 C 0.02 0.20 7.35 23.14 0.17 0.37 16 25 O -0.18 -1.85 10.28 -13.29 -0.14 -1.99 16 26 C -0.12 0.17 5.17 30.59 0.16 0.32 16 27 C -0.10 0.33 5.43 30.59 0.17 0.49 16 28 H 0.23 -0.82 7.80 -4.42 -0.03 -0.86 16 29 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 0.25 7.23 -2.39 -0.02 0.23 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.41 0.60 8.32 -92.70 -0.77 -0.17 16 34 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.09 -0.12 7.96 -2.38 -0.02 -0.14 16 36 H 0.39 -1.71 8.74 -74.06 -0.65 -2.35 16 37 H -0.28 -0.38 6.75 99.48 0.67 0.30 16 38 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 39 H 0.16 -0.70 4.85 -2.91 -0.01 -0.71 16 40 H 0.18 -1.42 6.26 -2.91 -0.02 -1.44 16 41 H 0.08 -0.71 7.66 -2.38 -0.02 -0.72 16 42 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H 0.07 -0.59 7.66 -2.39 -0.02 -0.60 16 44 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.07 -0.02 7.23 -2.39 -0.02 -0.04 16 46 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -21.59 391.03 1.66 -19.92 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -0.39 Total: -6.86 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.35 Total: 9.05 kcal Atomic # 7 Polarization: -2.95 SS G_CDS: -2.26 Total: -5.21 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -3.10 Total: -16.46 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.07 Total: -0.44 kcal Total: -21.59 1.66 -19.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_6672420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.617 kcal (2) G-P(sol) polarization free energy of solvation -21.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds