Wall clock time and date at job start Sun Mar 7 2021 08:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46636 * 198.47310 * 3 2 1 5 5 C 1.52996 * 109.47606 * 318.47610 * 3 2 1 6 6 C 1.53002 * 109.46891 * 59.99957 * 5 3 2 7 7 C 1.52997 * 109.46978 * 60.00410 * 6 5 3 8 8 H 1.09001 * 109.47375 * 59.99908 * 7 6 5 9 9 N 1.46504 * 109.47417 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00111 * 204.99914 * 9 7 6 11 11 O 1.21277 * 120.00090 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99819 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46752 * 179.97438 * 12 10 9 14 14 C 1.36835 * 125.06308 * 265.02317 * 13 12 10 15 15 C 1.34238 * 109.93537 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.50021 * 179.97438 * 15 14 13 17 17 O 1.42893 * 109.47227 * 255.02971 * 16 15 14 18 18 Si 1.86300 * 109.47059 * 15.02705 * 16 15 14 19 19 C 1.46488 * 107.00016 * 0.02562 * 15 14 13 20 20 C 1.39590 * 134.03704 * 180.02562 * 19 15 14 21 21 C 1.36663 * 119.76263 * 179.97438 * 20 19 15 22 22 C 1.38790 * 120.53200 * 0.02562 * 21 20 19 23 23 C 1.37787 * 120.66019 * 359.97438 * 22 21 20 24 24 C 1.37692 * 125.06215 * 84.72750 * 13 12 10 25 25 C 1.53006 * 109.47164 * 299.99874 * 7 6 5 26 26 C 1.52997 * 109.47127 * 59.99836 * 25 7 6 27 27 H 4.18737 * 15.03833 * 359.97438 * 4 2 1 28 28 H 1.08992 * 109.47554 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.47108 * 300.00249 * 5 3 2 30 30 H 1.09002 * 109.47097 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47142 * 300.00176 * 6 5 3 32 32 H 0.97003 * 119.99624 * 24.99596 * 9 7 6 33 33 H 1.08993 * 109.47165 * 300.00717 * 12 10 9 34 34 H 1.09002 * 109.46786 * 60.00194 * 12 10 9 35 35 H 1.07996 * 125.03154 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.47207 * 135.02449 * 16 15 14 37 37 H 0.96698 * 114.00233 * 179.97438 * 17 16 15 38 38 H 1.48493 * 110.00202 * 178.68221 * 18 16 15 39 39 H 1.48510 * 109.99992 * 299.99972 * 18 16 15 40 40 H 1.07996 * 120.11855 * 359.95100 * 20 19 15 41 41 H 1.08003 * 119.73501 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.66828 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.10242 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.46505 * 299.99708 * 25 7 6 45 45 H 1.08996 * 109.46884 * 180.02562 * 25 7 6 46 46 H 1.09002 * 109.47153 * 180.02562 * 26 25 7 47 47 H 1.09001 * 109.46832 * 60.00321 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9756 0.3256 5 6 3.1566 -1.0790 0.9562 6 6 2.6473 -2.4474 0.4991 7 6 3.1574 -2.7353 -0.9143 8 1 4.2474 -2.7348 -0.9144 9 7 2.6702 -4.0458 -1.3519 10 6 3.3476 -4.7380 -2.2892 11 8 4.3607 -4.2762 -2.7701 12 6 2.8467 -6.0864 -2.7389 13 7 3.7507 -6.6286 -3.7563 14 6 3.5757 -6.5080 -5.1080 15 6 4.5820 -7.1159 -5.7558 16 6 4.7596 -7.2097 -7.2494 17 8 4.4320 -8.5303 -7.6860 18 14 3.6358 -5.9822 -8.0867 19 6 5.4743 -7.6718 -4.7357 20 6 6.6653 -8.3984 -4.7800 21 6 7.2708 -8.7802 -3.6158 22 6 6.7108 -8.4518 -2.3891 23 6 5.5358 -7.7353 -2.3224 24 6 4.9060 -7.3305 -3.4946 25 6 2.6469 -1.6555 -1.8706 26 6 3.1562 -0.2872 -1.4135 27 1 -1.0500 -0.0009 -0.0008 28 1 4.2466 -1.0788 0.9559 29 1 2.7932 -0.8739 1.9632 30 1 3.0106 -3.2166 1.1806 31 1 1.5572 -2.4479 0.4991 32 1 1.8601 -4.4154 -0.9670 33 1 2.8110 -6.7637 -1.8857 34 1 1.8472 -5.9804 -3.1607 35 1 2.7502 -5.9991 -5.5833 36 1 5.7954 -6.9884 -7.5068 37 1 4.5234 -8.6633 -8.6394 38 1 3.8244 -6.0424 -9.5584 39 1 2.2204 -6.2731 -7.7437 40 1 7.1066 -8.6582 -5.7309 41 1 8.1921 -9.3427 -3.6507 42 1 7.2009 -8.7611 -1.4778 43 1 5.1081 -7.4843 -1.3630 44 1 1.5569 -1.6562 -1.8706 45 1 3.0100 -1.8609 -2.8776 46 1 2.7921 0.4821 -2.0945 47 1 4.2462 -0.2866 -1.4135 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17761044_9818708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:05:46 Heat of formation + Delta-G solvation = 51.562468 kcal Electronic energy + Delta-G solvation = -29046.929379 eV Core-core repulsion = 25163.104773 eV Total energy + Delta-G solvation = -3883.824606 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.42827 -41.09179 -39.54056 -37.94333 -37.57757 -35.78255 -34.15506 -33.18194 -31.95174 -31.48722 -30.44174 -30.10615 -28.65120 -25.71211 -24.15874 -23.84228 -23.47951 -22.47576 -21.75366 -21.46313 -20.39763 -18.80227 -18.33300 -18.17610 -18.05928 -17.62305 -17.18197 -16.42837 -16.32980 -16.23597 -15.69580 -15.57506 -15.51786 -15.25888 -14.80271 -14.76123 -14.57145 -14.39105 -14.06688 -13.97828 -13.90421 -13.41016 -13.39726 -13.26641 -12.96665 -12.62801 -12.42204 -12.39943 -12.33267 -12.29775 -11.94997 -11.83559 -11.58329 -11.56758 -11.11780 -11.00981 -10.87258 -10.36242 -10.24372 -10.14903 -8.96991 -8.47834 -4.86897 0.32739 0.84314 1.38539 1.45627 1.49191 1.64081 1.70310 1.89879 1.92616 2.00561 2.17694 3.14030 3.30755 3.45685 3.49719 3.65012 3.67092 3.71683 3.77162 3.87465 3.89684 3.91562 4.01655 4.10479 4.12229 4.34262 4.35795 4.37589 4.39682 4.42533 4.50214 4.52583 4.73789 4.74215 4.84139 4.91830 4.92688 4.95068 4.99854 5.03505 5.06167 5.08336 5.20074 5.27604 5.29808 5.40298 5.69058 5.85017 5.90429 5.94264 6.21439 6.36581 6.42518 6.63463 6.69916 7.06869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.016 3.984 4 H 0.096 0.904 5 C -0.107 4.107 6 C -0.128 4.128 7 C 0.148 3.852 8 H 0.090 0.910 9 N -0.726 5.726 10 C 0.492 3.508 11 O -0.511 6.511 12 C 0.091 3.909 13 N -0.465 5.465 14 C 0.072 3.928 15 C -0.151 4.151 16 C -0.037 4.037 17 O -0.537 6.537 18 Si 0.678 3.322 19 C -0.086 4.086 20 C -0.065 4.065 21 C -0.146 4.146 22 C -0.097 4.097 23 C -0.127 4.127 24 C 0.110 3.890 25 C -0.129 4.129 26 C -0.109 4.109 27 H 0.215 0.785 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.401 0.599 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.168 0.832 36 H 0.072 0.928 37 H 0.375 0.625 38 H -0.259 1.259 39 H -0.255 1.255 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 2.486 3.025 4.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.002 4.002 4 H 0.114 0.886 5 C -0.145 4.145 6 C -0.165 4.165 7 C 0.043 3.957 8 H 0.108 0.892 9 N -0.378 5.378 10 C 0.276 3.724 11 O -0.385 6.385 12 C -0.035 4.035 13 N -0.149 5.149 14 C -0.053 4.053 15 C -0.158 4.158 16 C -0.147 4.147 17 O -0.344 6.344 18 Si 0.579 3.421 19 C -0.090 4.090 20 C -0.084 4.084 21 C -0.165 4.165 22 C -0.117 4.117 23 C -0.147 4.147 24 C 0.006 3.994 25 C -0.168 4.168 26 C -0.147 4.147 27 H 0.232 0.768 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.185 0.815 36 H 0.090 0.910 37 H 0.222 0.778 38 H -0.184 1.184 39 H -0.180 1.180 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.133 0.867 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.945 2.982 2.945 5.122 hybrid contribution -0.613 -1.075 -0.338 1.283 sum -3.558 1.906 2.607 4.806 Atomic orbital electron populations 1.24924 0.95945 1.01306 1.00734 1.22906 0.94136 0.99989 1.00356 1.18431 0.84919 1.00212 0.96645 0.88643 1.21506 1.01282 0.92967 0.98782 1.21823 1.01695 0.97877 0.95153 1.21023 1.00067 0.81241 0.93331 0.89155 1.46051 1.29370 1.20294 1.42095 1.20979 0.84612 0.86955 0.79883 1.90804 1.23826 1.69486 1.54386 1.21602 0.94422 0.93887 0.93626 1.43188 1.20275 1.46734 1.04659 1.21498 0.99802 1.02286 0.81726 1.19409 0.97149 1.06844 0.92390 1.24005 1.05489 0.90972 0.94242 1.86641 1.90892 1.29047 1.27771 0.95094 0.79284 0.87785 0.79939 1.18938 0.96533 1.02214 0.91341 1.20266 0.93319 0.96299 0.98484 1.20654 1.00939 1.02762 0.92152 1.20813 0.94840 0.97973 0.98031 1.19949 0.97217 1.02663 0.94920 1.18143 0.88037 0.97772 0.95475 1.21921 1.01258 0.94053 0.99547 1.21525 1.01244 0.97071 0.94825 0.76814 0.90372 0.90782 0.91009 0.91061 0.76531 0.86462 0.86063 0.81466 0.91008 0.77771 1.18400 1.17971 0.86109 0.85957 0.85737 0.86731 0.91510 0.91161 0.91006 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 0.04 19.25 29.55 0.57 0.61 16 2 C -0.17 -0.02 10.06 -37.12 -0.37 -0.40 16 3 C 0.02 -0.02 3.07 -93.41 -0.29 -0.31 16 4 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 5 C -0.11 0.24 5.43 -26.73 -0.15 0.10 16 6 C -0.13 0.30 5.17 -26.73 -0.14 0.16 16 7 C 0.15 -0.17 2.45 -67.93 -0.17 -0.34 16 8 H 0.09 0.07 7.58 -51.93 -0.39 -0.32 16 9 N -0.73 1.55 5.08 -53.80 -0.27 1.28 16 10 C 0.49 0.16 7.86 -10.98 -0.09 0.07 16 11 O -0.51 -2.53 16.08 5.56 0.09 -2.44 16 12 C 0.09 -0.15 6.48 -5.19 -0.03 -0.18 16 13 N -0.47 -1.06 2.27 -115.71 -0.26 -1.33 16 14 C 0.07 0.18 9.89 -16.73 -0.17 0.01 16 15 C -0.15 -0.58 5.61 -102.71 -0.58 -1.16 16 16 C -0.04 -0.07 3.05 36.01 0.11 0.04 16 17 O -0.54 -1.53 12.86 -35.23 -0.45 -1.99 16 18 Si 0.68 0.18 30.79 -169.99 -5.23 -5.05 16 19 C -0.09 -0.44 6.35 -105.14 -0.67 -1.11 16 20 C -0.07 -0.27 10.05 -39.65 -0.40 -0.67 16 21 C -0.15 -0.44 9.97 -39.95 -0.40 -0.83 16 22 C -0.10 -0.25 10.01 -39.54 -0.40 -0.65 16 23 C -0.13 -0.39 10.00 -39.43 -0.39 -0.79 16 24 C 0.11 0.47 6.79 -83.99 -0.57 -0.10 16 25 C -0.13 0.08 5.27 -26.73 -0.14 -0.06 16 26 C -0.11 0.13 5.43 -26.73 -0.15 -0.01 16 27 H 0.21 -0.60 7.80 -54.09 -0.42 -1.02 16 28 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 29 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 30 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 31 H 0.07 -0.15 7.23 -51.93 -0.38 -0.52 16 32 H 0.40 -1.97 8.60 -40.82 -0.35 -2.32 16 33 H 0.12 -0.43 8.14 -51.93 -0.42 -0.86 16 34 H 0.12 -0.55 8.12 -51.93 -0.42 -0.97 16 35 H 0.17 -0.02 6.30 -52.49 -0.33 -0.35 16 36 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 37 H 0.37 -0.51 8.74 45.56 0.40 -0.11 16 38 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 39 H -0.26 -0.60 7.04 56.52 0.40 -0.21 16 40 H 0.12 0.34 8.06 -52.49 -0.42 -0.08 16 41 H 0.12 0.11 8.06 -52.48 -0.42 -0.31 16 42 H 0.12 0.04 8.06 -52.48 -0.42 -0.38 16 43 H 0.11 0.12 8.06 -52.49 -0.42 -0.30 16 44 H 0.07 -0.02 7.23 -51.93 -0.38 -0.39 16 45 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 46 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 47 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 390.34 15.07 5.88 5.88 Total: 0.00 -10.13 390.34 -11.61 -21.74 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: -6.96 Total: -12.49 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -4.40 Total: -5.62 kcal Atomic # 7 Polarization: 0.49 SS G_CDS: -0.54 Total: -0.05 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.36 Total: -4.42 kcal Atomic # 14 Polarization: 0.18 SS G_CDS: -5.23 Total: -5.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -10.13 -11.61 -21.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_9818708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.307 kcal (2) G-P(sol) polarization free energy of solvation -10.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds