Wall clock time and date at job start Sun Mar 7 2021 08:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46636 * 198.47310 * 3 2 1 5 5 C 1.52996 * 109.47606 * 318.47610 * 3 2 1 6 6 C 1.53002 * 109.46891 * 59.99957 * 5 3 2 7 7 C 1.52997 * 109.46978 * 60.00410 * 6 5 3 8 8 H 1.09001 * 109.47375 * 59.99908 * 7 6 5 9 9 N 1.46504 * 109.47417 * 179.97438 * 7 6 5 10 10 C 1.34773 * 120.00111 * 204.99914 * 9 7 6 11 11 O 1.21277 * 120.00090 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99819 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46752 * 179.97438 * 12 10 9 14 14 C 1.36835 * 125.06308 * 265.02317 * 13 12 10 15 15 C 1.34238 * 109.93537 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.50021 * 179.97438 * 15 14 13 17 17 O 1.42893 * 109.47227 * 255.02971 * 16 15 14 18 18 Si 1.86300 * 109.47059 * 15.02705 * 16 15 14 19 19 C 1.46488 * 107.00016 * 0.02562 * 15 14 13 20 20 C 1.39590 * 134.03704 * 180.02562 * 19 15 14 21 21 C 1.36663 * 119.76263 * 179.97438 * 20 19 15 22 22 C 1.38790 * 120.53200 * 0.02562 * 21 20 19 23 23 C 1.37787 * 120.66019 * 359.97438 * 22 21 20 24 24 C 1.37692 * 125.06215 * 84.72750 * 13 12 10 25 25 C 1.53006 * 109.47164 * 299.99874 * 7 6 5 26 26 C 1.52997 * 109.47127 * 59.99836 * 25 7 6 27 27 H 4.18737 * 15.03833 * 359.97438 * 4 2 1 28 28 H 1.08992 * 109.47554 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.47108 * 300.00249 * 5 3 2 30 30 H 1.09002 * 109.47097 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47142 * 300.00176 * 6 5 3 32 32 H 0.97003 * 119.99624 * 24.99596 * 9 7 6 33 33 H 1.08993 * 109.47165 * 300.00717 * 12 10 9 34 34 H 1.09002 * 109.46786 * 60.00194 * 12 10 9 35 35 H 1.07996 * 125.03154 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.47207 * 135.02449 * 16 15 14 37 37 H 0.96698 * 114.00233 * 179.97438 * 17 16 15 38 38 H 1.48493 * 110.00202 * 178.68221 * 18 16 15 39 39 H 1.48510 * 109.99992 * 299.99972 * 18 16 15 40 40 H 1.07996 * 120.11855 * 359.95100 * 20 19 15 41 41 H 1.08003 * 119.73501 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.66828 * 179.97438 * 22 21 20 43 43 H 1.08000 * 120.10242 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.46505 * 299.99708 * 25 7 6 45 45 H 1.08996 * 109.46884 * 180.02562 * 25 7 6 46 46 H 1.09002 * 109.47153 * 180.02562 * 26 25 7 47 47 H 1.09001 * 109.46832 * 60.00321 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9756 0.3256 5 6 3.1566 -1.0790 0.9562 6 6 2.6473 -2.4474 0.4991 7 6 3.1574 -2.7353 -0.9143 8 1 4.2474 -2.7348 -0.9144 9 7 2.6702 -4.0458 -1.3519 10 6 3.3476 -4.7380 -2.2892 11 8 4.3607 -4.2762 -2.7701 12 6 2.8467 -6.0864 -2.7389 13 7 3.7507 -6.6286 -3.7563 14 6 3.5757 -6.5080 -5.1080 15 6 4.5820 -7.1159 -5.7558 16 6 4.7596 -7.2097 -7.2494 17 8 4.4320 -8.5303 -7.6860 18 14 3.6358 -5.9822 -8.0867 19 6 5.4743 -7.6718 -4.7357 20 6 6.6653 -8.3984 -4.7800 21 6 7.2708 -8.7802 -3.6158 22 6 6.7108 -8.4518 -2.3891 23 6 5.5358 -7.7353 -2.3224 24 6 4.9060 -7.3305 -3.4946 25 6 2.6469 -1.6555 -1.8706 26 6 3.1562 -0.2872 -1.4135 27 1 -1.0500 -0.0009 -0.0008 28 1 4.2466 -1.0788 0.9559 29 1 2.7932 -0.8739 1.9632 30 1 3.0106 -3.2166 1.1806 31 1 1.5572 -2.4479 0.4991 32 1 1.8601 -4.4154 -0.9670 33 1 2.8110 -6.7637 -1.8857 34 1 1.8472 -5.9804 -3.1607 35 1 2.7502 -5.9991 -5.5833 36 1 5.7954 -6.9884 -7.5068 37 1 4.5234 -8.6633 -8.6394 38 1 3.8244 -6.0424 -9.5584 39 1 2.2204 -6.2731 -7.7437 40 1 7.1066 -8.6582 -5.7309 41 1 8.1921 -9.3427 -3.6507 42 1 7.2009 -8.7611 -1.4778 43 1 5.1081 -7.4843 -1.3630 44 1 1.5569 -1.6562 -1.8706 45 1 3.0100 -1.8609 -2.8776 46 1 2.7921 0.4821 -2.0945 47 1 4.2462 -0.2866 -1.4135 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_9818708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:05:45 Heat of formation + Delta-G solvation = 54.238682 kcal Electronic energy + Delta-G solvation = -29046.813329 eV Core-core repulsion = 25163.104773 eV Total energy + Delta-G solvation = -3883.708557 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.54189 -41.08027 -39.51752 -38.09307 -37.71091 -35.76906 -34.24125 -33.13738 -31.83827 -31.57601 -30.45649 -30.25777 -28.66809 -25.80076 -24.14469 -23.74753 -23.59199 -22.59651 -21.68389 -21.45848 -20.54593 -18.75900 -18.46290 -18.22544 -17.97690 -17.72523 -17.15258 -16.45603 -16.38405 -16.26920 -15.76476 -15.60903 -15.41241 -15.22973 -14.90185 -14.89123 -14.72591 -14.47203 -14.13586 -13.99203 -13.81565 -13.52718 -13.30866 -13.18101 -12.89643 -12.74049 -12.56599 -12.49938 -12.29574 -12.20095 -12.09547 -11.75972 -11.72965 -11.50883 -11.16060 -10.93398 -10.84281 -10.53851 -10.35599 -10.11257 -9.16440 -8.64125 -4.89366 0.13573 0.64146 1.31754 1.41798 1.47723 1.58512 1.62148 1.91948 1.95160 1.97682 2.21339 2.94354 3.43182 3.51381 3.56378 3.66012 3.75212 3.76859 3.79432 3.83450 4.00018 4.02729 4.11077 4.12375 4.21387 4.22940 4.27141 4.39935 4.45154 4.48656 4.51329 4.56845 4.64868 4.70111 4.78417 4.86221 4.89567 5.04437 5.05702 5.13344 5.13664 5.14731 5.16773 5.30302 5.38388 5.48163 5.50901 5.65652 5.72739 5.74937 6.16610 6.23530 6.48632 6.67335 6.76470 7.15063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.193 4.193 3 C 0.016 3.984 4 H 0.101 0.899 5 C -0.107 4.107 6 C -0.119 4.119 7 C 0.151 3.849 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.494 3.506 11 O -0.564 6.564 12 C 0.087 3.913 13 N -0.466 5.466 14 C 0.071 3.929 15 C -0.179 4.179 16 C -0.052 4.052 17 O -0.560 6.560 18 Si 0.759 3.241 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.134 4.134 24 C 0.092 3.908 25 C -0.122 4.122 26 C -0.107 4.107 27 H 0.234 0.766 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.417 0.583 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.191 0.809 36 H 0.074 0.926 37 H 0.390 0.610 38 H -0.282 1.282 39 H -0.279 1.279 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 2.657 4.190 6.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.193 4.193 3 C -0.002 4.002 4 H 0.119 0.881 5 C -0.145 4.145 6 C -0.157 4.157 7 C 0.046 3.954 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.279 3.721 11 O -0.441 6.441 12 C -0.038 4.038 13 N -0.149 5.149 14 C -0.054 4.054 15 C -0.186 4.186 16 C -0.160 4.160 17 O -0.369 6.369 18 Si 0.662 3.338 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.172 4.172 22 C -0.125 4.125 23 C -0.155 4.155 24 C -0.013 4.013 25 C -0.161 4.161 26 C -0.145 4.145 27 H 0.250 0.750 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.254 0.746 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.208 0.792 36 H 0.092 0.908 37 H 0.239 0.761 38 H -0.208 1.208 39 H -0.205 1.205 40 H 0.140 0.860 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.212 3.145 4.148 6.696 hybrid contribution -0.234 -1.126 -0.680 1.336 sum -4.446 2.018 3.469 5.989 Atomic orbital electron populations 1.25546 0.96779 1.00982 1.00351 1.23320 0.94824 1.00371 1.00757 1.18476 0.84408 1.00877 0.96474 0.88066 1.21520 1.01620 0.92677 0.98685 1.21758 1.01675 0.98081 0.94209 1.20923 0.98929 0.81458 0.94052 0.91199 1.45932 1.29529 1.19707 1.41166 1.21303 0.83861 0.87449 0.79475 1.90791 1.26191 1.70809 1.56331 1.21966 0.94936 0.92922 0.93974 1.43412 1.20097 1.46109 1.05254 1.21896 0.99885 1.01559 0.82080 1.19750 0.97764 1.07890 0.93242 1.24332 1.06570 0.91262 0.93838 1.86590 1.91047 1.29920 1.29356 0.94112 0.76261 0.86291 0.77181 1.19357 0.97302 1.03050 0.92555 1.20455 0.93784 0.97165 0.99124 1.20934 1.01493 1.02655 0.92095 1.21151 0.94889 0.97714 0.98741 1.20254 0.97377 1.02412 0.95431 1.18413 0.88960 0.98370 0.95596 1.21827 1.00996 0.94641 0.98612 1.21505 1.01327 0.96595 0.95111 0.74988 0.89864 0.90394 0.90191 0.90870 0.74585 0.83960 0.82638 0.79238 0.90787 0.76066 1.20803 1.20539 0.86033 0.84294 0.83485 0.84887 0.91583 0.93137 0.91413 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.23 19.25 74.32 1.43 1.66 16 2 C -0.19 0.01 10.06 31.13 0.31 0.32 16 3 C 0.02 -0.04 3.07 -12.60 -0.04 -0.08 16 4 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 5 C -0.11 0.53 5.43 30.59 0.17 0.70 16 6 C -0.12 0.65 5.17 30.59 0.16 0.81 16 7 C 0.15 -0.34 2.45 44.99 0.11 -0.23 16 8 H 0.07 0.18 7.58 -2.39 -0.02 0.16 16 9 N -0.71 3.54 5.08 -442.52 -2.25 1.29 16 10 C 0.49 0.19 7.86 87.66 0.69 0.88 16 11 O -0.56 -6.18 16.08 -3.02 -0.05 -6.23 16 12 C 0.09 -0.39 6.48 85.64 0.56 0.17 16 13 N -0.47 -2.15 2.27 -520.00 -1.18 -3.33 16 14 C 0.07 0.38 9.89 83.00 0.82 1.20 16 15 C -0.18 -1.62 5.61 -18.63 -0.10 -1.73 16 16 C -0.05 -0.27 3.05 71.24 0.22 -0.05 16 17 O -0.56 -3.94 12.86 -148.98 -1.92 -5.85 16 18 Si 0.76 0.57 30.79 68.60 2.11 2.68 16 19 C -0.12 -1.42 6.35 -20.20 -0.13 -1.54 16 20 C -0.09 -0.89 10.05 22.23 0.22 -0.67 16 21 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 22 C -0.11 -0.58 10.01 22.29 0.22 -0.36 16 23 C -0.13 -0.87 10.00 22.37 0.22 -0.64 16 24 C 0.09 0.85 6.79 39.03 0.27 1.12 16 25 C -0.12 0.08 5.27 30.60 0.16 0.24 16 26 C -0.11 0.20 5.43 30.59 0.17 0.36 16 27 H 0.23 -1.53 7.80 -4.42 -0.03 -1.57 16 28 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 30 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.07 -0.39 7.23 -2.39 -0.02 -0.41 16 32 H 0.42 -4.80 8.60 -92.71 -0.80 -5.60 16 33 H 0.14 -1.35 8.14 -2.39 -0.02 -1.37 16 34 H 0.16 -1.80 8.12 -2.39 -0.02 -1.82 16 35 H 0.19 -0.13 6.30 -2.91 -0.02 -0.15 16 36 H 0.07 0.26 7.96 -2.39 -0.02 0.24 16 37 H 0.39 -0.62 8.74 -74.06 -0.65 -1.27 16 38 H -0.28 -1.20 7.11 99.48 0.71 -0.49 16 39 H -0.28 -1.29 7.04 99.48 0.70 -0.59 16 40 H 0.12 1.01 8.06 -2.91 -0.02 0.98 16 41 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 43 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 44 H 0.07 -0.04 7.23 -2.39 -0.02 -0.05 16 45 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -25.65 390.34 1.96 -23.69 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: -0.43 Total: -13.55 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.67 Total: 1.31 kcal Atomic # 7 Polarization: 1.39 SS G_CDS: -3.43 Total: -2.04 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.96 Total: -12.08 kcal Atomic # 14 Polarization: 0.57 SS G_CDS: 2.11 Total: 2.68 kcal Total: -25.65 1.96 -23.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_9818708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.929 kcal (2) G-P(sol) polarization free energy of solvation -25.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds