Wall clock time and date at job start Sun Mar 7 2021 10:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 C 1.53004 * 109.47089 * 240.00236 * 2 1 3 5 5 O 1.45192 * 109.47201 * 120.00234 * 2 1 3 6 6 C 1.34230 * 117.00459 * 59.99996 * 5 2 1 7 7 O 1.20828 * 119.99677 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00533 * 180.02562 * 6 5 2 9 9 H 1.09001 * 112.85001 * 311.19877 * 8 6 5 10 10 C 1.53962 * 113.73927 * 82.40138 * 8 6 5 11 11 C 1.53784 * 87.01460 * 139.94887 * 10 8 6 12 12 O 1.42896 * 113.61832 * 89.22849 * 11 10 8 13 13 C 1.53004 * 113.61135 * 220.04945 * 11 10 8 14 14 N 1.46507 * 109.46832 * 284.13595 * 13 11 10 15 15 C 1.34777 * 119.99703 * 179.97438 * 14 13 11 16 16 O 1.21713 * 120.00605 * 0.02562 * 15 14 13 17 17 C 1.46571 * 119.99767 * 179.97438 * 15 14 13 18 18 C 1.40849 * 126.58031 * 179.97438 * 17 15 14 19 19 C 1.40087 * 132.86594 * 359.97438 * 18 17 15 20 20 C 1.36459 * 119.25698 * 179.72369 * 19 18 17 21 21 C 1.50690 * 120.29829 * 180.26384 * 20 19 18 22 22 O 1.42902 * 109.47282 * 240.29911 * 21 20 19 23 23 Si 1.86298 * 109.47211 * 120.29789 * 21 20 19 24 24 C 1.40159 * 119.40357 * 0.56162 * 20 19 18 25 25 C 1.35193 * 120.31917 * 359.42227 * 24 20 19 26 26 N 1.36242 * 120.70581 * 0.30629 * 25 24 20 27 27 N 1.40011 * 132.01129 * 179.97438 * 26 25 24 28 28 C 1.30736 * 109.60712 * 179.97438 * 27 26 25 29 29 C 1.53774 * 113.61687 * 179.97438 * 8 6 5 30 30 H 1.08999 * 109.47237 * 299.99794 * 1 2 3 31 31 H 1.09001 * 109.47121 * 60.00135 * 1 2 3 32 32 H 1.09002 * 109.47377 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47763 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46983 * 300.00752 * 3 2 1 35 35 H 1.08999 * 109.46805 * 59.99942 * 3 2 1 36 36 H 1.09001 * 109.47095 * 299.99574 * 4 2 1 37 37 H 1.08997 * 109.47195 * 60.00263 * 4 2 1 38 38 H 1.09002 * 109.46876 * 180.02562 * 4 2 1 39 39 H 1.08997 * 113.61543 * 25.42487 * 10 8 6 40 40 H 1.09003 * 113.66286 * 254.46999 * 10 8 6 41 41 H 0.96705 * 113.99605 * 80.86277 * 12 11 10 42 42 H 1.08993 * 109.47376 * 164.13456 * 13 11 10 43 43 H 1.08997 * 109.47334 * 44.12941 * 13 11 10 44 44 H 0.97004 * 119.99775 * 0.02562 * 14 13 11 45 45 H 1.08004 * 120.37939 * 0.02562 * 19 18 17 46 46 H 1.08999 * 109.47677 * 0.29781 * 21 20 19 47 47 H 0.96698 * 114.00021 * 180.02562 * 22 21 20 48 48 H 1.48501 * 110.00030 * 298.68310 * 23 21 20 49 49 H 1.48510 * 109.99930 * 59.99944 * 23 21 20 50 50 H 1.08002 * 119.84246 * 179.70755 * 24 20 19 51 51 H 1.07995 * 119.64651 * 180.27544 * 25 24 20 52 52 H 1.08000 * 125.63298 * 180.02562 * 28 27 26 53 53 H 1.09002 * 113.61333 * 105.38249 * 29 8 6 54 54 H 1.09002 * 113.69197 * 334.49752 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9566 -2.5028 0.5077 8 6 2.1173 -2.7435 2.5441 9 1 3.1878 -2.6451 2.7243 10 6 1.2582 -2.5085 3.7999 11 6 1.4020 -4.0134 4.0817 12 8 2.5484 -4.3414 4.8692 13 6 0.1186 -4.6652 4.6004 14 7 -0.0782 -4.3046 6.0067 15 6 -1.1521 -4.7673 6.6770 16 8 -1.9581 -5.4850 6.1143 17 6 -1.3487 -4.4071 8.0841 18 6 -2.4145 -4.8091 8.9125 19 6 -3.5410 -5.6126 8.6935 20 6 -4.4149 -5.8297 9.7188 21 6 -5.6310 -6.6949 9.5109 22 8 -6.8103 -5.9257 9.7556 23 14 -5.5753 -8.1377 10.6882 24 6 -4.1744 -5.2356 10.9653 25 6 -3.0805 -4.4639 11.1539 26 7 -2.1993 -4.2459 10.1379 27 7 -1.0141 -3.5038 10.0685 28 6 -0.5095 -3.5945 8.8659 29 6 1.6189 -4.1980 2.5709 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 0.2361 -2.2014 3.5785 40 1 1.7388 -1.8766 4.5468 41 1 2.4254 -4.2050 5.8187 42 1 0.1994 -5.7484 4.5109 43 1 -0.7301 -4.3144 4.0133 44 1 0.5639 -3.7323 6.4551 45 1 -3.7134 -6.0593 7.7254 46 1 -5.6439 -7.0632 8.4852 47 1 -7.6332 -6.4202 9.6406 48 1 -4.3698 -8.9634 10.4228 49 1 -5.5574 -7.6488 12.0904 50 1 -4.8639 -5.3988 11.7804 51 1 -2.9035 -4.0151 12.1201 52 1 0.4017 -3.1229 8.5287 53 1 2.3902 -4.9284 2.3267 54 1 0.6956 -4.3549 2.0132 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17792076_11618758.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:06:04 Heat of formation + Delta-G solvation = -65.984433 kcal Electronic energy + Delta-G solvation = -38185.909419 eV Core-core repulsion = 33092.666012 eV Total energy + Delta-G solvation = -5093.243407 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.187 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.42292 -42.26848 -41.04701 -40.03889 -39.20223 -38.03730 -37.28702 -35.94457 -35.35707 -35.01949 -34.36266 -32.28130 -30.97838 -29.32672 -28.44024 -28.35404 -27.39570 -26.96107 -26.20807 -24.92800 -23.72435 -23.02827 -22.47911 -21.45000 -20.92912 -20.51861 -19.50752 -18.63741 -18.32291 -18.08104 -17.85378 -17.55681 -17.25208 -17.15730 -17.09354 -16.99077 -16.60141 -16.28785 -15.98271 -15.84432 -15.68548 -15.49672 -15.26647 -15.06078 -14.67881 -14.60615 -14.45327 -14.32599 -14.15829 -13.95425 -13.58557 -13.46838 -13.42910 -13.31441 -13.16170 -13.10763 -12.98343 -12.91480 -12.79858 -12.59882 -12.51629 -12.35681 -12.20896 -12.05057 -11.99495 -11.73656 -11.62506 -11.44214 -11.14441 -11.07907 -10.85303 -10.79462 -10.27779 -10.23630 -8.91658 -5.02419 -0.69914 -0.25081 0.89726 0.93767 1.11474 1.21535 1.62946 1.63636 1.90273 1.95741 2.05186 2.37974 2.87543 2.93935 3.08075 3.14195 3.38076 3.41253 3.46389 3.48596 3.59484 3.67733 3.68960 3.74162 3.79250 3.86623 3.89019 3.92922 4.12183 4.21741 4.25998 4.31463 4.34699 4.47190 4.52755 4.54241 4.59517 4.61572 4.68253 4.70290 4.72635 4.76948 4.82471 4.84912 4.89152 4.92917 4.99474 5.03499 5.07143 5.13588 5.17175 5.19421 5.23611 5.28004 5.52275 5.52696 6.18328 6.43800 6.65330 6.76322 6.84443 7.17673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.354 6.354 6 C 0.470 3.530 7 O -0.525 6.525 8 C -0.103 4.103 9 H 0.140 0.860 10 C -0.136 4.136 11 C 0.115 3.885 12 O -0.539 6.539 13 C 0.112 3.888 14 N -0.711 5.711 15 C 0.602 3.398 16 O -0.588 6.588 17 C -0.337 4.337 18 C 0.148 3.852 19 C -0.121 4.121 20 C -0.032 4.032 21 C -0.083 4.083 22 O -0.557 6.557 23 Si 0.802 3.198 24 C -0.152 4.152 25 C 0.110 3.890 26 N -0.275 5.275 27 N -0.336 5.336 28 C 0.134 3.866 29 C -0.105 4.105 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.394 0.606 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.413 0.587 45 H 0.154 0.846 46 H 0.092 0.908 47 H 0.409 0.591 48 H -0.305 1.305 49 H -0.272 1.272 50 H 0.182 0.818 51 H 0.206 0.794 52 H 0.243 0.757 53 H 0.091 0.909 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 1.097 3.799 4.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.271 6.271 6 C 0.315 3.685 7 O -0.414 6.414 8 C -0.122 4.122 9 H 0.158 0.842 10 C -0.173 4.173 11 C 0.073 3.927 12 O -0.347 6.347 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.392 3.608 16 O -0.470 6.470 17 C -0.351 4.351 18 C 0.027 3.973 19 C -0.141 4.141 20 C -0.038 4.038 21 C -0.191 4.191 22 O -0.367 6.367 23 Si 0.705 3.295 24 C -0.173 4.173 25 C -0.015 4.015 26 N -0.039 5.039 27 N -0.156 5.156 28 C -0.047 4.047 29 C -0.143 4.143 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.250 0.750 45 H 0.172 0.828 46 H 0.110 0.890 47 H 0.261 0.739 48 H -0.233 1.233 49 H -0.198 1.198 50 H 0.199 0.801 51 H 0.223 0.777 52 H 0.259 0.741 53 H 0.110 0.890 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.991 1.002 4.447 4.665 hybrid contribution 0.212 0.343 -0.787 0.885 sum -0.779 1.345 3.660 3.977 Atomic orbital electron populations 1.22456 0.94014 1.03563 1.03693 1.22440 0.94527 0.93337 0.82632 1.21876 1.02413 0.91162 1.04076 1.22464 1.01816 1.02068 0.97460 1.86564 1.69602 1.25357 1.45592 1.23870 0.76710 0.80658 0.87272 1.90590 1.36386 1.70447 1.43996 1.22549 1.03641 0.94894 0.91102 0.84191 1.23663 1.00564 0.97161 0.95939 1.22077 0.84607 0.93826 0.92154 1.86572 1.35547 1.89365 1.23257 1.21819 0.97248 1.00599 0.81544 1.45337 1.26057 1.52979 1.12038 1.16927 0.80756 0.78631 0.84510 1.90772 1.45953 1.39924 1.70351 1.19662 1.01694 1.17507 0.96277 1.19557 0.96005 0.95337 0.86432 1.20706 0.92809 0.99475 1.01068 1.19869 0.96140 0.94667 0.93086 1.24891 0.84499 1.00614 1.09139 1.86423 1.15781 1.41363 1.93157 0.94223 0.85206 0.74512 0.75561 1.21160 0.97760 0.99189 0.99161 1.22178 0.87885 0.98287 0.93148 1.46300 1.17385 1.31619 1.08573 1.77576 0.96032 1.19619 1.22388 1.24717 0.98812 0.92615 0.88532 1.23024 1.03622 0.94732 0.92942 0.91687 0.89646 0.91877 0.91215 0.88772 0.91171 0.91893 0.89582 0.91737 0.88835 0.87009 0.75507 0.91324 0.90765 0.74969 0.82818 0.89047 0.73896 1.23316 1.19806 0.80052 0.77712 0.74099 0.89042 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.48 8.37 71.98 0.60 0.13 16 2 C 0.11 0.27 1.13 -10.79 -0.01 0.26 16 3 C -0.14 0.26 8.85 71.98 0.64 0.90 16 4 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 5 O -0.35 -1.57 9.89 -51.42 -0.51 -2.08 16 6 C 0.47 2.18 6.80 71.24 0.48 2.66 16 7 O -0.52 -4.97 11.41 21.96 0.25 -4.72 16 8 C -0.10 0.11 4.19 -10.95 -0.05 0.06 16 9 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16 10 C -0.14 0.65 7.04 31.18 0.22 0.87 16 11 C 0.12 -0.43 1.38 -10.28 -0.01 -0.45 16 12 O -0.54 2.40 13.41 -148.98 -2.00 0.41 16 13 C 0.11 -0.05 5.24 86.38 0.45 0.40 16 14 N -0.71 1.43 5.32 -467.16 -2.49 -1.06 16 15 C 0.60 4.05 7.78 86.42 0.67 4.72 16 16 O -0.59 -8.75 15.71 -4.39 -0.07 -8.82 16 17 C -0.34 -1.98 6.17 -19.90 -0.12 -2.10 16 18 C 0.15 1.27 6.76 39.49 0.27 1.54 16 19 C -0.12 -0.91 9.35 22.30 0.21 -0.70 16 20 C -0.03 -0.11 4.53 -19.82 -0.09 -0.20 16 21 C -0.08 0.20 2.81 71.23 0.20 0.40 16 22 O -0.56 1.88 12.76 -148.98 -1.90 -0.02 16 23 Si 0.80 -3.92 31.97 68.60 2.19 -1.73 16 24 C -0.15 -0.10 8.67 22.03 0.19 0.09 16 25 C 0.11 0.14 11.18 83.31 0.93 1.07 16 26 N -0.27 -1.77 3.86 -187.28 -0.72 -2.49 16 27 N -0.34 -1.86 12.57 -56.62 -0.71 -2.57 16 28 C 0.13 0.05 11.44 85.42 0.98 1.03 16 29 C -0.11 0.05 6.79 31.10 0.21 0.26 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 31 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 0.45 5.89 -2.39 -0.01 0.44 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.09 -0.45 8.14 -2.38 -0.02 -0.47 16 35 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.06 0.47 5.89 -2.39 -0.01 0.45 16 37 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 -0.30 8.01 -2.39 -0.02 -0.32 16 40 H 0.11 -0.98 8.14 -2.39 -0.02 -0.99 16 41 H 0.39 -4.65 7.72 -74.05 -0.57 -5.22 16 42 H 0.07 0.19 8.14 -2.39 -0.02 0.18 16 43 H 0.07 0.15 8.09 -2.39 -0.02 0.13 16 44 H 0.41 -4.06 6.34 -92.71 -0.59 -4.65 16 45 H 0.15 1.33 7.01 -2.91 -0.02 1.31 16 46 H 0.09 -0.40 7.71 -2.39 -0.02 -0.42 16 47 H 0.41 -5.63 8.74 -74.06 -0.65 -6.28 16 48 H -0.31 -1.06 7.11 99.48 0.71 -0.35 16 49 H -0.27 0.26 7.07 99.48 0.70 0.97 16 50 H 0.18 -0.72 7.52 -2.91 -0.02 -0.74 16 51 H 0.21 -1.13 8.06 -2.91 -0.02 -1.15 16 52 H 0.24 -2.67 7.46 -2.91 -0.02 -2.69 16 53 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 54 H 0.10 0.17 7.40 -2.39 -0.02 0.15 16 Total: 0.00 -32.00 443.30 -0.38 -32.38 By element: Atomic # 1 Polarization: -19.53 SS G_CDS: -0.80 Total: -20.33 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 6.37 Total: 11.03 kcal Atomic # 7 Polarization: -2.20 SS G_CDS: -3.92 Total: -6.12 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -4.23 Total: -15.23 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.19 Total: -1.73 kcal Total: -32.00 -0.38 -32.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17792076_11618758.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.602 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds