Wall clock time and date at job start Sun Mar 7 2021 10:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46883 * 2 1 4 4 C 1.52997 * 109.47427 * 239.99915 * 2 1 3 5 5 O 1.45196 * 109.47014 * 119.99723 * 2 1 3 6 6 C 1.34234 * 116.99938 * 60.00164 * 5 2 1 7 7 O 1.20822 * 119.99973 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00068 * 179.97438 * 6 5 2 9 9 H 1.08999 * 112.85013 * 48.79797 * 8 6 5 10 10 C 1.53773 * 113.61589 * 180.02562 * 8 6 5 11 11 C 1.53783 * 87.08167 * 139.98020 * 10 8 6 12 12 O 1.42893 * 113.61512 * 89.11778 * 11 10 8 13 13 C 1.53001 * 113.61296 * 219.93466 * 11 10 8 14 14 N 1.46494 * 109.47168 * 180.02562 * 13 11 10 15 15 C 1.34783 * 120.00378 * 180.02562 * 14 13 11 16 16 O 1.21284 * 119.99445 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00247 * 179.97438 * 15 14 13 18 18 O 1.42902 * 109.46911 * 179.97438 * 17 15 14 19 19 C 1.35895 * 116.99610 * 180.02562 * 18 17 15 20 20 C 1.38715 * 120.05476 * 179.72735 * 19 18 17 21 21 C 1.50698 * 120.02739 * 359.97438 * 20 19 18 22 22 O 1.42902 * 109.47068 * 285.00037 * 21 20 19 23 23 Si 1.86295 * 109.47266 * 165.00198 * 21 20 19 24 24 C 1.38164 * 119.94255 * 179.68118 * 20 19 18 25 25 C 1.38241 * 120.05743 * 0.61146 * 24 20 19 26 26 C 1.38290 * 120.11045 * 359.68563 * 25 24 20 27 27 C 1.38122 * 120.05441 * 359.97438 * 26 25 24 28 28 C 1.53782 * 87.08248 * 334.56531 * 11 10 8 29 29 H 1.08998 * 109.47018 * 300.00366 * 1 2 3 30 30 H 1.08994 * 109.46696 * 60.00313 * 1 2 3 31 31 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47084 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47659 * 299.99940 * 3 2 1 34 34 H 1.08998 * 109.47592 * 59.99986 * 3 2 1 35 35 H 1.09006 * 109.47130 * 300.00224 * 4 2 1 36 36 H 1.09003 * 109.47043 * 59.99678 * 4 2 1 37 37 H 1.08999 * 109.47232 * 179.97438 * 4 2 1 38 38 H 1.09003 * 113.61414 * 254.52677 * 10 8 6 39 39 H 1.09003 * 113.61720 * 25.34922 * 10 8 6 40 40 H 0.96698 * 114.00284 * 179.97438 * 12 11 10 41 41 H 1.09000 * 109.47512 * 300.00071 * 13 11 10 42 42 H 1.08999 * 109.47186 * 59.99882 * 13 11 10 43 43 H 0.97003 * 120.00297 * 359.97438 * 14 13 11 44 44 H 1.09000 * 109.47044 * 300.00280 * 17 15 14 45 45 H 1.09004 * 109.46774 * 59.99711 * 17 15 14 46 46 H 1.09001 * 109.47404 * 45.00105 * 21 20 19 47 47 H 0.96700 * 114.00260 * 299.99823 * 22 21 20 48 48 H 1.48502 * 109.99990 * 180.02562 * 23 21 20 49 49 H 1.48506 * 109.99951 * 301.31987 * 23 21 20 50 50 H 1.07999 * 119.97186 * 180.31734 * 24 20 19 51 51 H 1.08005 * 119.94749 * 179.70434 * 25 24 20 52 52 H 1.08001 * 119.96953 * 180.02562 * 26 25 24 53 53 H 1.08006 * 120.02421 * 180.02562 * 27 26 25 54 54 H 1.08997 * 113.61322 * 270.88478 * 28 11 10 55 55 H 1.08998 * 113.60983 * 139.97830 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5079 8 6 2.1182 -2.7437 2.5437 9 1 1.9551 -2.2090 3.4794 10 6 1.6207 -4.1985 2.5700 11 6 3.0148 -4.5830 3.0929 12 8 3.1233 -4.5423 4.5171 13 6 3.5578 -5.8814 2.4927 14 7 4.8831 -6.1607 3.0510 15 6 5.5591 -7.2608 2.6645 16 8 5.0699 -8.0198 1.8548 17 6 6.9227 -7.5478 3.2384 18 8 7.4298 -8.7605 2.6778 19 6 8.6586 -9.1656 3.0933 20 6 9.2095 -10.3369 2.5944 21 6 8.4454 -11.1620 1.5912 22 8 7.3930 -11.8646 2.2551 23 14 9.5976 -12.3852 0.7868 24 6 10.4618 -10.7431 3.0134 25 6 11.1604 -9.9901 3.9386 26 6 10.6109 -8.8253 4.4421 27 6 9.3622 -8.4112 4.0211 28 6 3.5388 -3.3148 2.3986 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6768 -1.7490 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 0.8209 -4.3734 3.2896 39 1 1.3970 -4.6014 1.5822 40 1 3.9977 -4.7835 4.8521 41 1 2.8826 -6.7028 2.7323 42 1 3.6337 -5.7775 1.4103 43 1 5.2746 -5.5535 3.6983 44 1 7.5979 -6.7262 2.9991 45 1 6.8467 -7.6521 4.3208 46 1 8.0214 -10.5074 0.8298 47 1 7.6978 -12.4672 2.9472 48 1 8.8563 -13.2047 -0.2052 49 1 10.7142 -11.6684 0.1199 50 1 10.8933 -11.6522 2.6214 51 1 12.1372 -10.3118 4.2684 52 1 11.1588 -8.2385 5.1645 53 1 8.9336 -7.5011 4.4144 54 1 3.8407 -3.4767 1.3638 55 1 4.2873 -2.7765 2.9799 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17792076_2989392.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:10:05 Heat of formation + Delta-G solvation = -177.482656 kcal Electronic energy + Delta-G solvation = -37002.907063 eV Core-core repulsion = 31973.450642 eV Total energy + Delta-G solvation = -5029.456422 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.32595 -41.65188 -41.04233 -40.21376 -38.52188 -38.06575 -37.47808 -36.08781 -35.45607 -35.04690 -32.73764 -31.48260 -30.50351 -28.64845 -28.46326 -28.37139 -27.01671 -26.67495 -26.05864 -23.55734 -22.64738 -22.56748 -21.83116 -20.99106 -20.55877 -19.49590 -19.10825 -18.23102 -18.05798 -17.60674 -17.57819 -17.42300 -17.20209 -17.07647 -16.81469 -16.41958 -16.26747 -16.00988 -15.70900 -15.68960 -15.34489 -15.25561 -14.99630 -14.96575 -14.70341 -14.57278 -14.25073 -14.21130 -13.80532 -13.65494 -13.52400 -13.46428 -13.32041 -13.18724 -13.01101 -13.00352 -12.93531 -12.84895 -12.54909 -12.39059 -12.35576 -12.18447 -12.08188 -12.07706 -11.78582 -11.67891 -11.46557 -11.17888 -11.11679 -10.84428 -10.39217 -10.38285 -9.94294 -9.20428 -5.06123 0.26112 0.43495 1.08619 1.28260 1.34382 1.36978 1.61254 1.63246 1.94983 2.51178 2.73127 2.81297 3.07670 3.30085 3.38704 3.40938 3.52566 3.56075 3.65421 3.72040 3.75998 3.83600 3.89947 3.90293 3.97936 4.02560 4.14580 4.17979 4.27253 4.32767 4.37904 4.50608 4.52093 4.54224 4.54947 4.58741 4.64173 4.67026 4.68206 4.74928 4.79939 4.80745 4.85495 4.88375 4.99389 5.05099 5.08011 5.11109 5.17191 5.21685 5.30123 5.40252 5.49841 5.55415 5.77834 6.18178 6.38266 6.60320 6.73514 6.81346 7.00450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.106 3.894 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.353 6.353 6 C 0.470 3.530 7 O -0.526 6.526 8 C -0.103 4.103 9 H 0.142 0.858 10 C -0.108 4.108 11 C 0.117 3.883 12 O -0.537 6.537 13 C 0.108 3.892 14 N -0.707 5.707 15 C 0.514 3.486 16 O -0.570 6.570 17 C 0.037 3.963 18 O -0.316 6.316 19 C 0.125 3.875 20 C -0.172 4.172 21 C -0.073 4.073 22 O -0.557 6.557 23 Si 0.794 3.206 24 C -0.079 4.079 25 C -0.154 4.154 26 C -0.076 4.076 27 C -0.212 4.212 28 C -0.135 4.135 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.394 0.606 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.420 0.580 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.079 0.921 47 H 0.391 0.609 48 H -0.305 1.305 49 H -0.282 1.282 50 H 0.156 0.844 51 H 0.154 0.846 52 H 0.154 0.846 53 H 0.156 0.844 54 H 0.093 0.907 55 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 5.113 7.751 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.270 6.270 6 C 0.314 3.686 7 O -0.415 6.415 8 C -0.121 4.121 9 H 0.160 0.840 10 C -0.146 4.146 11 C 0.075 3.925 12 O -0.345 6.345 13 C -0.016 4.016 14 N -0.364 5.364 15 C 0.300 3.700 16 O -0.447 6.447 17 C -0.041 4.041 18 O -0.229 6.229 19 C 0.080 3.920 20 C -0.173 4.173 21 C -0.182 4.182 22 O -0.365 6.365 23 Si 0.699 3.301 24 C -0.097 4.097 25 C -0.172 4.172 26 C -0.094 4.094 27 C -0.231 4.231 28 C -0.172 4.172 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.245 0.755 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.258 0.742 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.096 0.904 47 H 0.240 0.760 48 H -0.233 1.233 49 H -0.208 1.208 50 H 0.173 0.827 51 H 0.172 0.828 52 H 0.172 0.828 53 H 0.174 0.826 54 H 0.111 0.889 55 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.401 4.634 5.576 9.672 hybrid contribution -0.278 0.806 -0.196 0.875 sum 6.123 5.440 5.380 9.800 Atomic orbital electron populations 1.22465 0.94124 1.03531 1.03723 1.22440 0.94469 0.93380 0.82617 1.21874 1.02459 0.91094 1.04083 1.22460 1.01843 1.02017 0.97436 1.86563 1.69620 1.25242 1.45620 1.23886 0.76561 0.80614 0.87517 1.90595 1.36208 1.70430 1.44271 1.22519 0.99578 0.94618 0.95431 0.84042 1.23062 0.96319 0.92341 1.02898 1.22058 0.96964 0.91514 0.81920 1.86599 1.38860 1.91534 1.17530 1.21858 0.83542 0.97313 0.98873 1.45462 1.18727 1.25337 1.46827 1.20593 0.87169 0.80855 0.81362 1.90803 1.70221 1.48666 1.35059 1.22713 0.92704 0.88094 1.00558 1.86187 1.31161 1.40686 1.64914 1.19100 0.84228 0.94026 0.94671 1.19844 0.97223 0.96634 1.03626 1.25170 0.96009 0.99727 0.97258 1.86543 1.33818 1.60477 1.55633 0.94052 0.75333 0.79114 0.81606 1.21103 0.91975 0.99963 0.96618 1.21457 1.01733 0.95790 0.98208 1.21422 0.93984 0.95964 0.98001 1.21596 0.97816 1.02668 1.00976 1.23643 0.94897 0.95916 1.02761 0.91680 0.89597 0.91964 0.91101 0.88795 0.91170 0.91960 0.89669 0.91618 0.88998 0.87895 0.75478 0.91454 0.90796 0.74152 0.85702 0.85550 0.90380 0.76002 1.23340 1.20821 0.82695 0.82835 0.82797 0.82647 0.88857 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.48 8.37 71.98 0.60 0.12 16 2 C 0.11 0.23 1.13 -10.79 -0.01 0.21 16 3 C -0.14 0.33 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 5 O -0.35 -1.36 9.89 -51.46 -0.51 -1.87 16 6 C 0.47 1.95 6.79 71.24 0.48 2.43 16 7 O -0.53 -4.90 11.40 21.98 0.25 -4.65 16 8 C -0.10 0.19 4.19 -11.01 -0.05 0.14 16 9 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 10 C -0.11 0.11 6.80 31.12 0.21 0.32 16 11 C 0.12 -0.58 1.49 -10.27 -0.02 -0.60 16 12 O -0.54 3.40 13.41 -148.98 -2.00 1.40 16 13 C 0.11 -0.18 5.33 86.38 0.46 0.28 16 14 N -0.71 3.85 5.34 -463.06 -2.47 1.37 16 15 C 0.51 1.63 7.91 87.66 0.69 2.32 16 16 O -0.57 -9.37 16.50 15.99 0.26 -9.11 16 17 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 18 O -0.32 -2.46 9.00 -73.33 -0.66 -3.12 16 19 C 0.13 0.52 6.66 22.51 0.15 0.67 16 20 C -0.17 -0.68 5.27 -19.77 -0.10 -0.78 16 21 C -0.07 -0.50 2.38 71.24 0.17 -0.33 16 22 O -0.56 -4.70 12.88 -148.98 -1.92 -6.62 16 23 Si 0.79 1.25 29.91 68.60 2.05 3.31 16 24 C -0.08 0.14 8.66 22.25 0.19 0.33 16 25 C -0.15 0.66 10.04 22.28 0.22 0.88 16 26 C -0.08 0.36 10.04 22.25 0.22 0.59 16 27 C -0.21 0.57 9.04 22.36 0.20 0.78 16 28 C -0.13 0.80 7.01 31.12 0.22 1.02 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 0.46 5.89 -2.39 -0.01 0.44 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.06 0.44 5.89 -2.38 -0.01 0.42 16 36 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.10 0.16 7.39 -2.39 -0.02 0.14 16 40 H 0.39 -5.72 7.30 -74.06 -0.54 -6.26 16 41 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.07 0.09 7.95 -2.39 -0.02 0.07 16 43 H 0.42 -6.15 7.03 -92.71 -0.65 -6.80 16 44 H 0.13 -1.19 7.66 -2.39 -0.02 -1.21 16 45 H 0.13 -1.19 7.66 -2.38 -0.02 -1.21 16 46 H 0.08 1.00 7.83 -2.39 -0.02 0.98 16 47 H 0.39 -0.62 8.70 -74.06 -0.64 -1.27 16 48 H -0.30 -2.98 7.11 99.48 0.71 -2.27 16 49 H -0.28 -1.51 7.11 99.48 0.71 -0.80 16 50 H 0.16 -1.10 5.12 -2.91 -0.01 -1.11 16 51 H 0.15 -1.43 8.06 -2.91 -0.02 -1.45 16 52 H 0.15 -1.56 8.06 -2.91 -0.02 -1.58 16 53 H 0.16 -1.45 6.30 -2.91 -0.02 -1.47 16 54 H 0.09 -0.41 7.92 -2.39 -0.02 -0.43 16 55 H 0.11 -1.15 8.14 -2.39 -0.02 -1.16 16 Total: 0.00 -35.22 444.41 -0.58 -35.80 By element: Atomic # 1 Polarization: -25.46 SS G_CDS: -0.86 Total: -26.31 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.26 Total: 9.80 kcal Atomic # 7 Polarization: 3.85 SS G_CDS: -2.47 Total: 1.37 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -4.57 Total: -23.97 kcal Atomic # 14 Polarization: 1.25 SS G_CDS: 2.05 Total: 3.31 kcal Total: -35.22 -0.58 -35.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17792076_2989392.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.683 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds