Wall clock time and date at job start Sun Mar 7 2021 10:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.53003 * 109.47097 * 239.99921 * 2 1 3 5 5 O 1.45202 * 109.47454 * 120.00028 * 2 1 3 6 6 C 1.34227 * 117.00113 * 59.99669 * 5 2 1 7 7 O 1.20829 * 119.99881 * 0.02562 * 6 5 2 8 8 C 1.50697 * 120.00323 * 180.02562 * 6 5 2 9 9 H 1.09002 * 112.84782 * 309.66950 * 8 6 5 10 10 C 1.53786 * 113.61519 * 80.86360 * 8 6 5 11 11 C 1.54049 * 86.98426 * 140.01979 * 10 8 6 12 12 O 1.42897 * 113.68845 * 89.12814 * 11 10 8 13 13 C 1.53002 * 113.62024 * 220.02020 * 11 10 8 14 14 N 1.46503 * 109.47362 * 282.49966 * 13 11 10 15 15 C 1.34772 * 119.99988 * 180.02562 * 14 13 11 16 16 O 1.21640 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.47188 * 119.99827 * 180.02562 * 15 14 13 18 18 C 1.36004 * 123.46143 * 0.02562 * 17 15 14 19 19 S 1.70445 * 110.81760 * 179.97438 * 18 17 15 20 20 C 1.75498 * 92.44648 * 0.02562 * 19 18 17 21 21 C 1.50696 * 124.71590 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47430 * 245.02271 * 21 20 19 23 23 Si 1.86309 * 109.46958 * 5.02306 * 21 20 19 24 24 C 1.32770 * 110.57538 * 359.73580 * 20 19 18 25 25 C 1.53781 * 113.61630 * 178.47308 * 8 6 5 26 26 H 1.09001 * 109.46913 * 299.99791 * 1 2 3 27 27 H 1.09000 * 109.47260 * 60.00241 * 1 2 3 28 28 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47344 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46798 * 300.00042 * 3 2 1 31 31 H 1.08999 * 109.47155 * 59.99502 * 3 2 1 32 32 H 1.09001 * 109.46916 * 299.99767 * 4 2 1 33 33 H 1.09000 * 109.46704 * 59.99988 * 4 2 1 34 34 H 1.08997 * 109.47113 * 179.97438 * 4 2 1 35 35 H 1.08992 * 113.61675 * 254.61723 * 10 8 6 36 36 H 1.09000 * 113.60973 * 25.52011 * 10 8 6 37 37 H 0.96701 * 113.99930 * 82.46646 * 12 11 10 38 38 H 1.08998 * 109.46948 * 42.50131 * 13 11 10 39 39 H 1.09005 * 109.47399 * 162.49568 * 13 11 10 40 40 H 0.97003 * 119.99480 * 359.97438 * 14 13 11 41 41 H 1.08002 * 124.59621 * 0.02562 * 18 17 15 42 42 H 1.09003 * 109.47659 * 125.02022 * 21 20 19 43 43 H 0.96703 * 113.99855 * 60.00271 * 22 21 20 44 44 H 1.48495 * 109.99912 * 58.68113 * 23 21 20 45 45 H 1.48498 * 109.99824 * 180.02562 * 23 21 20 46 46 H 1.08005 * 123.46305 * 180.24933 * 24 20 19 47 47 H 1.08999 * 113.61567 * 334.48200 * 25 8 6 48 48 H 1.08998 * 113.61196 * 105.38554 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5079 8 6 2.1174 -2.7434 2.5442 9 1 3.1922 -2.6665 2.7089 10 6 1.2802 -2.4779 3.8065 11 6 1.3966 -3.9853 4.1020 12 8 2.5465 -4.3314 4.8765 13 6 0.1069 -4.6051 4.6438 14 7 -0.0441 -4.2593 6.0594 15 6 -1.1142 -4.6997 6.7502 16 8 -1.9550 -5.3838 6.1982 17 6 -1.2661 -4.3518 8.1723 18 6 -0.3711 -3.5912 8.8580 19 16 -0.8629 -3.3893 10.4774 20 6 -2.3109 -4.3511 10.2364 21 6 -3.3328 -4.6461 11.3040 22 8 -3.3429 -6.0482 11.5794 23 14 -2.8973 -3.7114 12.8557 24 6 -2.3837 -4.7786 8.9815 25 6 1.5890 -4.1868 2.5897 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 1.7834 -1.8476 4.5396 36 1 0.2619 -2.1519 3.5944 37 1 2.4316 -4.2067 5.8285 38 1 -0.7447 -4.2202 4.0829 39 1 0.1520 -5.6890 4.5373 40 1 0.6266 -3.7141 6.4996 41 1 0.5289 -3.1713 8.4337 42 1 -4.3192 -4.3366 10.9583 43 1 -2.4956 -6.3937 11.8923 44 1 -2.8523 -2.2539 12.5750 45 1 -3.8972 -3.9943 13.9165 46 1 -3.1939 -5.3856 8.6052 47 1 0.6550 -4.3273 2.0456 48 1 2.3415 -4.9353 2.3412 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17792076_6894386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:12:15 Heat of formation + Delta-G solvation = -141.244946 kcal Electronic energy + Delta-G solvation = -31186.947838 eV Core-core repulsion = 26722.434859 eV Total energy + Delta-G solvation = -4464.512979 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.29589 -41.30105 -40.37559 -38.80128 -38.05401 -37.12269 -36.02739 -35.45604 -35.02792 -32.02090 -29.67845 -28.44851 -28.35839 -27.06683 -26.95321 -26.58706 -24.96835 -22.64244 -22.10364 -21.04822 -20.68514 -20.49277 -19.21386 -18.44787 -18.16891 -17.86097 -17.56092 -17.30917 -17.15697 -16.77082 -16.57073 -16.30945 -15.97007 -15.78135 -15.49582 -15.28946 -15.10956 -14.71086 -14.68443 -14.45093 -14.25446 -14.09177 -13.67863 -13.65103 -13.57564 -13.47003 -13.30286 -13.16877 -12.99233 -12.92170 -12.82282 -12.63984 -12.52867 -12.36740 -12.30578 -12.06466 -11.95714 -11.65799 -11.45020 -11.15674 -11.10528 -10.81698 -10.58201 -10.37574 -10.00115 -9.43244 -5.13819 -0.33786 0.40077 0.69961 0.80688 1.10753 1.22531 1.60632 1.62207 1.90566 1.95463 2.22391 2.84470 3.09704 3.34123 3.40079 3.43073 3.45794 3.66481 3.66873 3.73454 3.85219 3.88495 3.91489 3.98024 4.19465 4.27743 4.29954 4.40662 4.52058 4.53500 4.57439 4.62741 4.67436 4.69622 4.70487 4.76319 4.82089 4.82442 4.87528 4.90701 4.99709 5.06559 5.11603 5.14730 5.18532 5.18912 5.23066 5.51488 6.32242 6.62046 6.69174 6.75314 7.06357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.353 6.353 6 C 0.470 3.530 7 O -0.526 6.526 8 C -0.102 4.102 9 H 0.142 0.858 10 C -0.135 4.135 11 C 0.116 3.884 12 O -0.537 6.537 13 C 0.108 3.892 14 N -0.708 5.708 15 C 0.578 3.422 16 O -0.583 6.583 17 C -0.185 4.185 18 C -0.186 4.186 19 S 0.258 5.742 20 C -0.251 4.251 21 C -0.040 4.040 22 O -0.553 6.553 23 Si 0.744 3.256 24 C -0.078 4.078 25 C -0.107 4.107 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.393 0.607 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.414 0.586 41 H 0.211 0.789 42 H 0.112 0.888 43 H 0.397 0.603 44 H -0.255 1.255 45 H -0.275 1.275 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.399 5.933 5.397 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.271 6.271 6 C 0.314 3.686 7 O -0.415 6.415 8 C -0.121 4.121 9 H 0.160 0.840 10 C -0.173 4.173 11 C 0.074 3.926 12 O -0.345 6.345 13 C -0.016 4.016 14 N -0.362 5.362 15 C 0.365 3.635 16 O -0.464 6.464 17 C -0.202 4.202 18 C -0.325 4.325 19 S 0.525 5.475 20 C -0.368 4.368 21 C -0.151 4.151 22 O -0.362 6.362 23 Si 0.646 3.354 24 C -0.107 4.107 25 C -0.145 4.145 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.244 0.756 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.227 0.773 42 H 0.129 0.871 43 H 0.247 0.753 44 H -0.180 1.180 45 H -0.201 1.201 46 H 0.146 0.854 47 H 0.121 0.879 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.607 6.621 5.767 10.989 hybrid contribution -1.349 -0.810 -1.736 2.343 sum 5.258 5.811 4.031 8.812 Atomic orbital electron populations 1.22460 0.94057 1.03531 1.03709 1.22436 0.94484 0.93351 0.82612 1.21875 1.02439 0.91118 1.04090 1.22467 1.01847 1.02051 0.97486 1.86563 1.69586 1.25327 1.45577 1.23891 0.76715 0.80683 0.87289 1.90596 1.36413 1.70460 1.44023 1.22521 1.03715 0.94858 0.91007 0.84032 1.23677 1.00766 0.97034 0.95810 1.22128 0.84400 0.93871 0.92210 1.86587 1.35498 1.89104 1.23323 1.21870 0.97588 1.00954 0.81237 1.45486 1.24950 1.54601 1.11124 1.17907 0.80991 0.78573 0.86032 1.90819 1.43651 1.40415 1.71555 1.20003 0.98715 1.07295 0.94235 1.26223 1.04184 1.01334 1.00742 1.82890 1.12726 1.46237 1.05666 1.24892 1.03832 1.08698 0.99371 1.24713 0.98557 0.88709 1.03134 1.86510 1.39943 1.21122 1.88589 0.94204 0.88593 0.77794 0.74858 1.20987 0.98041 0.99477 0.92214 1.23045 1.03488 0.95050 0.92882 0.91634 0.89675 0.91935 0.91172 0.88820 0.91103 0.91932 0.89619 0.91687 0.86877 0.88883 0.75561 0.90761 0.91240 0.74735 0.77265 0.87082 0.75280 1.18032 1.20099 0.85391 0.87857 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.38 8.37 71.98 0.60 0.22 16 2 C 0.11 0.20 1.13 -10.79 -0.01 0.19 16 3 C -0.14 0.36 8.85 71.98 0.64 1.00 16 4 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 5 O -0.35 -1.26 9.89 -51.39 -0.51 -1.77 16 6 C 0.47 1.81 6.79 71.24 0.48 2.29 16 7 O -0.53 -4.72 11.41 21.96 0.25 -4.47 16 8 C -0.10 0.21 4.19 -11.01 -0.05 0.17 16 9 H 0.14 -0.60 8.14 -2.39 -0.02 -0.62 16 10 C -0.14 0.82 7.04 31.21 0.22 1.04 16 11 C 0.12 -0.58 1.42 -10.18 -0.01 -0.59 16 12 O -0.54 3.30 13.42 -148.98 -2.00 1.30 16 13 C 0.11 -0.16 5.26 86.38 0.45 0.29 16 14 N -0.71 2.78 5.29 -466.58 -2.47 0.31 16 15 C 0.58 2.70 7.79 86.59 0.67 3.37 16 16 O -0.58 -8.92 16.80 -4.16 -0.07 -8.99 16 17 C -0.18 -0.13 5.98 -19.87 -0.12 -0.25 16 18 C -0.19 1.42 10.38 67.30 0.70 2.12 16 19 S 0.26 -1.96 20.20 -56.49 -1.14 -3.11 16 20 C -0.25 0.28 5.65 24.51 0.14 0.42 16 21 C -0.04 0.04 2.94 71.23 0.21 0.25 16 22 O -0.55 -0.29 12.88 -148.98 -1.92 -2.21 16 23 Si 0.74 -3.29 30.92 68.60 2.12 -1.17 16 24 C -0.08 -0.30 9.95 22.67 0.23 -0.08 16 25 C -0.11 0.14 6.79 31.12 0.21 0.35 16 26 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.06 0.42 5.89 -2.39 -0.01 0.41 16 29 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.06 0.44 5.89 -2.39 -0.01 0.43 16 33 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.11 -1.17 8.14 -2.39 -0.02 -1.18 16 36 H 0.09 -0.41 7.99 -2.39 -0.02 -0.43 16 37 H 0.39 -5.46 7.60 -74.06 -0.56 -6.02 16 38 H 0.07 0.09 8.05 -2.39 -0.02 0.07 16 39 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.41 -5.11 5.82 -92.71 -0.54 -5.65 16 41 H 0.21 -3.46 7.01 -2.91 -0.02 -3.48 16 42 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 43 H 0.40 -3.24 8.70 -74.05 -0.64 -3.88 16 44 H -0.25 0.38 7.11 99.48 0.71 1.08 16 45 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 46 H 0.13 1.10 8.06 -2.91 -0.02 1.08 16 47 H 0.10 0.11 7.41 -2.39 -0.02 0.09 16 48 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: 0.00 -26.68 405.87 -1.46 -28.14 By element: Atomic # 1 Polarization: -18.32 SS G_CDS: -0.69 Total: -19.02 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.97 Total: 10.98 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.47 Total: 0.31 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -4.25 Total: -16.14 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.12 Total: -1.17 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -1.14 Total: -3.11 kcal Total: -26.68 -1.46 -28.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17792076_6894386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.102 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds